| mature miRNA: TACTCCCTCCGTTCCTAAATA species: Triticum monococcum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|22017988|gb|BQ803019.1|BQ803019 WHE2832_G05_N10ZS Triticum monococcum vernalized apex cDNA library Triticum monococcum cDNA c TACTCCCTCCGTTCCTAAATA EST sequence (targeted fragment marked with yellow): CGGCACGAGGATTTCTGCGACGAGTAATTTGGAACGAAGGGAGTATGTGTTATGTATATCTGTTTGGTACCGTTTATAACCTCTGGTAGAGTGCCCGTATTAAGCTTTTGCCCACATTTTCTTTGCTATGGAAAAATAATAATCCGGTGGCATATAACCTCATCATCTGTTTTCGTGTGTGCAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|31417345|gb|CD490319.1|CD490319 WHE2494_C07_F14ZT Triticum monococcum DV92 early reproductive apex cDNA library Triticum mono TACTCCCTCCGTTCCTAAATA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTAGACAAAACAGTTATAAATTCAAGTCTGGCCAATTTCTCCGACAAGTATTTCCGGACGAAGGGAGTAATACTACTTCTCTATGATCCACAATTTTGTGCAACCAAATATCTAATATATGGACTGTCTTGAACTAATAAAGAGACATTGTAACAATAGGATATGAGAATACCATTTGGACAATCCCTTTTGGTAATCTTTCGCGAATCCAGTTTTGTTCCAAGTGCAACTTTCCTTCCCCTTCCAGCTTGCACCAAGTTAAATTCACTACTTGCATCCATGTATATTTTCCTGGAGCGGCGTGAGGTGGGACTGGTAGAACTGGTCGGCGGTGACGTAGCCGGCCTGGCGGGCGAGCTTCTTGCAGGTGTCAGAGACGGCGAGGCAGGACCTAATCCCCTCCCACCGGGCGGGGTCGTCGGAGACGTAGCCGCGCAGCCACATAGAGAAGCCGTCGAGGCGGTACTCGTCGTACTCGCGGCCGAGCACCGGGTAGGCG | |||||||||
gi|22017034|gb|BQ802065.1|BQ802065 WHE2821_F09_K17ZS Triticum monococcum vernalized apex cDNA library Triticum monococcum cDNA c TACTCCCTCCGTTCCTAAATA EST sequence (targeted fragment marked with yellow): TCGGCACGAGGCATCTATGTATTAATAGTAGCATATTATAGCATCTTTCATCTATCAAAGTTCAGCCTATGCATATTATAGTGACACTTACTTTGGGGCGGAGGGAGTATTTCTTTGCAGCTTCCAAGCTACGTTTTCTTGTAGTGACGTGTTAGCTAACTGTTCTCTGTTCGCACATTGCTCTCAGATGTCGACAATTCCGTGTGGAGTGCAGAAGATTGCAGGGAGTTTTGCGAGATCCGGAACTAATACAAGACGGAAGTGTTAGCAAAAAGATACATGGCAGACTGATTCTTTTCTACAGTTTTGATAGACTGAGCAGAATGTTTTCCTCAAAAAAATTGGGCTGAATTTTGGTCGTATGGAACTTAGCTTCTAGAAATTTAGAAATTGGTTTGCTCACTGCATCCTGTAATAATCTATTGCGTCTTTTGTGAGAGAAACTGATGTTATTCTTTTGATGAGAATAATAACAAGAGTATCTCCAGCAAAAAAAAAAAAAAAAAA | |||||||||
gi|22016461|gb|BQ801492.1|BQ801492 WHE2815_A05_B09ZS Triticum monococcum vernalized apex cDNA library Triticum monococcum cDNA c TACTCCCTCCGTTCCTAAATA EST sequence (targeted fragment marked with yellow): TCGGCACGAGGACTCGTCCATGAAGAACCGCGAGCGCTTCTCCCAAGTGCTGCTCTTCTCCTCGGCGCTCTGCAGCCTCAACTACGGACTCACGGCGGTGCTGGGCTACCTCATATACGGCGACGACGTGCGGTCGCAGGTGACGCTCAACCTGCCATCAGGGAGGCTCTACACCAAGATCGCCATCGTCATGACTCTCATCAACCCGCTGACCAAGTACGCGCTGCTCGTCGCGCCCATCACGTCGGCGATCGAGGAGAGGTTCTCGCTTGCGGGGAGTGGGTCGGTGAGGGTGGCCGTCAGCACCACCGTTCTCGTGAGCACGGTCGTGGTGGCGTCCATGGTGCCCTTCTTCGGGTTCCTCATGTCCTTCATCGGTTCCTTCCTCAGCGTCATGGCCACAGTCTTCTTCCCCTGCCTCTGCTACCTCAAGATCTACAGAGCCAAAGGCCTACGCCGGGTCGAGGTCGCGGCAATCGTCGCCATCCTGCTGCTAGGGGCGTTCGTTGCCATCACTGGCACCTATACTTCTTTGCTGGACATCATAGCCACTTGACAGTACTTCCTATTAACTGTGCTATATCCTATATGCTAGACACTTATTTCGAAACGGAGGGAGTAGTACAAACAAAACAAACCGAGCGATCTTAGTGTATGTAAGATAAAGTGAAGGTCATCCCTAATTTTGAGAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|13657719|gb|BG607724.1|BG607724 WHE2490_G10_N20ZS Triticum monococcum early reproductive apex cDNA library Triticum monococcu TACTCCCTCCGTTCCTAAATA EST sequence (targeted fragment marked with yellow): GCACGGGGTGTGGCACTTTGATCGGATGCTGCTCGAAGAAGAAGCCTAGAGATCAGGCCATGAATATGCATTGCTGCTCAGGGGAAGATGCATGTAGATCACAACTCACAACTGTCAAGTAGTGGATCAGCCAACCACTGTGGATGTGTTTCTTGGGTTTTTCAGTGGGTTTATTGAGTCGTATGTAAGGTGTTTGCGTCCTCCAAAAGAACATGGCGCACTGAAAGTACTTCCTCCGTTCCAAATTACTCGTCACAGAAATGGATGTATCTAGAACTAAAATACATCTAGATACACCCATTCCTGCAACAAGTAATTCGGAACGGAGGGAGTAGTAAGTAGTAGAACATGTGAACTATGTTACTTCTGTGCATGTGCTGC | |||||||||
gi|13116024|gb|BG314221.1|BG314221 WHE2460_G07_M14ZS Triticum monococcum early reproductive apex cDNA library Triticum monococcu TACTCCCTCCGTTCCTAAATA EST sequence (targeted fragment marked with yellow): AGTGATTTTACACTCTAAAATTGCCTACGTACATCCGTATGTTGTAGTCCATTTGAAATGTCTAAAAATACTTGTATTTAAGAACGGAGGGAGTATTTGGTTGTGGTAATATAGAATTGAAATAACTTTGTGTTAAAAAAAAAAAAAAAA | |||||||||
gi|21332105|gb|BQ487485.1|BQ487485 WHE2459_H05_O09ZY Triticum monococcum early reproductive apex cDNA library Triticum monococcu TACTCCCTCCGTTCCTAAATA EST sequence (targeted fragment marked with yellow): GGATATCAAAATGCACAGCAGATGTAAATGTCGAATTAATGCCTTCCAACTTTTCTCAACATGGTACCTGACGACTAAAAGCAGAAAACTAATAATGCAACAATCTATGTATATACTCCCTCCGTTCATATATAAGTGAAGTGGTTTTAGTTTAAATTTGGACTAAAACCACGTCACTTATATATGGACGGAGGGAGTATAAAATATACAGAGTACATCAGAGCCTCATTTTTGCTTCACTGCTGGTGCAAGATACTGCTCCAGTTCAGCATCAAGATCCGCATCAGACGCCGGAACTCGGCTGCGATCATGCGCTCTGGCTCTGCCCTGTCCCCGCCCACCACCGTCCTGGACAGTGTTTCCAGGACGAACGTTGCCTTGAAACATTCCTCTTTTGCCAACACCGCCCTGACCACTGCCT | |||||||||
gi|25443891|gb|CA722098.1|CA722098 wds1c.pk003.e18.f wds1c Triticum monococcum cDNA clone wds1c.pk003.e18.f 3' end, mRNA sequenc TACTCCCTCCGTTCCTAAATA EST sequence (targeted fragment marked with yellow): ATACGAGCCACTATAGGGCGAAATGGGTACCGGGCCCCCCCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTCTAAATGCTCTTATATTAGTTTGGAGTACTATGTATTTATTTTTCCGACAAATATTTTCGGACGGTATGTATTTATTTCTTCGACTATTTTGGGACGGATGGAGTATGTATTTGNGTATGCATGGACGGATGGAGTATGTATTTGNGCATGCACGTGGCAGCGTTCTTAATCTANATTCCCAGTCAGAGCTTGGATGGCGTCCCTCTGGGATGGNGCACCANGATGAGGCCGTAGGCGTCCANTGTGAGGAAGTCGTCCANCTCCGGGGCGACGCANTGCCGGATGAAGACCCTGCCANCCTCCGCGTAGCGCCCCCGGCGGAACCTCNCCGCGCCGATCTCTGNCTGGACCCTCGCCANCTCCTCCTCCAAGANGCGCGGGANCANCTCCGGGGTGGGTCGGACCGCCACNCCCGCCGGGGNCCAACACCGCGCCAAGGGGGGNGCCANTGGCA | |||||||||
gi|22015692|gb|BQ800723.1|BQ800723 WHE2802_A04_A08ZS Triticum monococcum vernalized apex cDNA library Triticum monococcum cDNA c TACTCCCTCCGTTCCTAAATA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTACCCAAGACCCTACATATAGTCCTGGGCTTTATTGCGAACTTCAAATGTATCCACTGGCAGCACATGCACAGAAGTAACATAGTTCACATGTTCTACTACTTACTACTCCCTCCGTTCCGAATTACTTGTCGCAGGAATGGGTGTATCTAGATGTATTTTAGTTCTAGATACATTCATTTCTGTGACGAGTAATTTGGAACGGAGGAAGTACTTTCAGTGCGCCATGTTCTTTTGGAGGACGCAAACACCTTACATACGACTCAATAAACCCACTGAAAAACCCAAGAAACACATCCACAGTGGTTGGCTGATCCACTACTTGACAGTTGTGAGTTGTGATCTACATGCATCTTCCCCTGAGCAGCAATGCATATTCATGGCCTGATCTCTAGGCCTCTTCTTCGAGCAGCATCCGATCAAAGTGCCACACCCCGTGCCCTTTGCCGATTCTCCTAAGCTGCGTCACGTACTCGGAGATCTTCTTCACGGCGACAACCTGCTCCTGAAGAAATTGACTCTCAACAAAGTCGCTCAGCT | |||||||||
gi|9659942|gb|BE493349.1|BE493349 WHE0571_F10_K19ZE Triticum monococcum vegetative apex cDNA library Triticum monococcum cDNA cl TACTCCCTCCGTTCCTAAATA EST sequence (targeted fragment marked with yellow): GGCACGAGAATTTGGTTTGTGTGTGGTAGCATTCCTCCTAGCTTCATAGTATGGTCTATCTAGCTTGGCTTTTACTCCCTCGGTCCCAAAATAAGTGACACTTATTTTGGGACGGAGGGAGTACTTTAATGAATCTGAAGAAGCGTTATGTTT | |||||||||
gi|31417114|gb|CD492076.1|CD492076 WHE2468_H10_O20ZT Triticum monococcum DV92 early reproductive apex cDNA library Triticum mono TACTCCCTCCGTTCCTAAATA EST sequence (targeted fragment marked with yellow): AGACTAGTTCTCTCCAAAAATAAAATAAAAAACTGAAGGCTTACATAAGTAATTCGGAACGGAGGGAGTACTTAACTAGGATATCATTTGGGTACAACGTGGATGAGAATACGTAATCAGTGATGCAACAACCGTCCAGCTAAAAGAAAACGGGCACAAATTGAATGCCACCATGTTTTTTCCCCATTGCTGCATACTGCCTAAAATTCAAATGCTTAAGCAGTGCAGGTTCCTCGATATCATCCTCAAAGGGCATGCCTAAGACATCCCATTTAGGTCAATCAACTCATACTAGTACACAAATTGCTCATCATATTATTTAGATTGCGTGCATCGCAAGTATGGCCATATTGTGACAGCACAAAGCTAAGATTTATTAGCTCCATGCAAGTTTAGGTCAACTTTCTAACAGGATCAACACTTGGGTCATGGAAATTCTCTTTTCCTGGCAGCACCTTCAGGGCACTAGAATAGCCCCTAGTCCAAGGGCAACTGAGAAAGAGACATTTGTCCTTCTTGCATCCGAACCTCATACTTTCAACAGAAAATAAAGCGTGCACTTTTGCAACTTTAATTCTACACATCTTCTCATGAATGAAGATTATTAAGATCTTATTATCACACGTTTAAGTTATTCGTAATGACTATTCCTGAATGTTATAAACTTACACTACCTGCATTGCCACGAAAGTTCTCATCCAAAGTCTATTAATACGTGTGCTCTACATTAACTTGAGGACTCAACATTGCCGTCCTCGGAGAACTACAATTCTGTGCAACCTACCCT | |||||||||
gi|20314392|gb|BQ168741.1|BQ168741 WHE2457_D05_H09ZT Triticum monococcum early reproductive apex cDNA library Triticum monococcu TACTCCCTCCGTTCCTAAATA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACCAAATCTTATGATCGGGATAATTCAGAAAAATATTCTCCCTTTGTTCGGAAATACTTGTCTTAAAAATGGTTGAAAATGAATGTATCTATAACTAAAATAAGTCTAGATACAATTATTTCTAAGACAAGTATTTCCGGACGGAGGGAGTACTACCCAGGATTTCACACACGAAAGAAAGAAAGAAGGGAAATTCATATGCACAGTCACATTTTATCTACACATATGCTGCCATTGTCAACGATCGGCACGGCACATGATTGAACGGCCAAAGAGGCAGAAGCTACAGGAGCACGCGGAAATTCATTAAGATAGGCTTCAGGACGACCAGCAGCTGAGCCGCACGGCCTCGTCGAACTTGCTCGCCAGCGTCGCGGGCTCCTCCTCCTCCTCCTCCTCGCCGCCGGGCCGACGCGCCCTCTCCTTCACTTCGTGCCCCGCCGCATCCCGCCGCTTCGGCGCCAGGGCGCCAAGGG | |||||||||
gi|22015929|gb|BQ800960.1|BQ800960 WHE2804_F11_L22ZS Triticum monococcum vernalized apex cDNA library Triticum monococcum cDNA c TACTCCCTCCGTTCCTAAATA EST sequence (targeted fragment marked with yellow): TTTTGATGACAAGTATTTCCGGACGGAGGGAGTATAATTCAATTTTTTTTGTTAGCGATGGAACTTTTCACTTATGGGAAACCAACACATGGACGTCAGAACCCTGGTCTTCATCCAATGGATATGTAACTGGAGCAAACTGGGACCCAGAAGGTCGTGTTGCATTGTTATCCTTTTCTAACTCAACCACACTAGGTTCAGTTCACTTCTCATCAAAGCCACCATCTTTAGGTATAGGCATTACTGCATTCTTTCAGTTCAAGGTATGCTATTGTGTACATTCCTGAATCCTGATCAGTTATGATGTGTTCCTTAACTTCAGATGCGCATCTCCTACCAGTGGAGCTTCCAGAAATTTCCTCTCTGATTGTTAGGTAACAAAAGCGGCACTGCCATTCTACTCTTGACTTCATGTGGACCTCATGCAACATATTTTACTGTTGTCTTGAATGCTAATTTTAGCCGGTGATATTGCAAAGTAA | |||||||||
gi|25444198|gb|CA722405.1|CA722405 wds1c.pk002.g20.f wds1c Triticum monococcum cDNA clone wds1c.pk002.g20.f 3' end, mRNA sequenc TACTCCCTCCGTTCCTAAATA EST sequence (targeted fragment marked with yellow): TAATACGACCCACTATAGGGCGAATTGGGTACCGGGCCCCCCCTCGAGTTTTTTTTTTTTTTTTTTTTAACAAGAACTAGTTCTTTGTAATCTTATTATCCAAATAAACCCCAAGAGANCACCCCTGTTTCAAAATTAGGTAATACGACATATCCAGCACGGAGTAGGGATATCAAAAGCACAGCAGATGTAAATGTCGAATTAATGCCTTCCAACTTTTCTCAACATGGTANCTGACGACTAAAAGCAGANAACTAATAATGCANNANTCTATGTANATACTCCCTCCGTTCATAAATAAGTGAAGTGGTTTTAGTTTAAATTTGGACTAAAACCACGTCACTTATATATGGACGGAGGGAGTATAAAATATACAGAGTACATCAAGAGCCTCATTTTTGCTTCACTGCTGCTGCATGATACTGCTCCAGTTCAAGCATCAAGATCCGCAGCAAGAGGCCGGAACCGGCTGCGATCATGCCCTCTGGCTCTGCCCTGTCCCCCGCCCAACACCGGTCC | |||||||||