| mature miRNA: TACTTCCTCCGTTTCATAATA species: Raphanus sativus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|167446101|gb|FD950390.1|FD950390 RS3FT19JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence TACTTCCTCCGTTTCATAATA EST sequence (targeted fragment marked with yellow): GCGAGGCTAGCCAAACTAGCTATCGGAGTAACCATTTCAAAAGCTAAATCAACGGCTCTTTTTCTTACCAAGTTCTCGCGCTCAGCAACCAAAGCCAAAGACTGTGCTTCTTACCTTAAAGACGCACTCGACGAGATGAGAGATTCTCTCCGAACACTACGCAACATTAGCCGCGGAGTAGGCATTGATGCGGCTCCGTCATCGGTGGAGATGTTTAGATTCAAGATGAGTGACGTGCAGACGTACATGAGTGCAGCTTTGACGTATGAGGATACGTGTACGGACGAATATGATGGAACGGATGAAGTGGGAGGGACCAAGACCGCTGTTTATGATCGGGTGAACAATCTGAAGAGGTTAACTAGTAATGCTCTTGCGCTTGTTAACAGTTATGCCAACTATGGAGCTCCTTGAGATGAGATCATGAAAGCGTTTTTTAACCTTTAATTTAAATGTTTCTTCTGATATTTATTTTTACTTTGTTAAATATTTCTTTTGAAAATTTAGTATGATGTTTTATAAACTTTTAATTCTAAATCTATCATAGTTGAGTTTAGTGTGGGTTTGGATACAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|167452122|gb|FD954597.1|FD954597 RS3FZ24TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence TACTTCCTCCGTTTCATAATA EST sequence (targeted fragment marked with yellow): GGACCGGAGCAAGAAGAAAAGAAAACCAAAGAAACTTAAAAAAAAACAGTGAACATAATGGGAAGCAAAAATCTTACGGCGACGTTGCTCCTCTTCACCACCTTTCTCTTCATTTCCCGATCAACCTCAGCCGTTCATTCTCCTCCACGACTAAACGCAGCAACCAACGATCTAACTTTCATCCGAACAAGCTGCAACGCAACTCTATATGCAGACCTCTGCTTCAACTCTCTCGCTGGCTATGCCTCTGCCGTTCAAAACAATCCGGCTAGGCTAGCCAAACTAGCTATCGGAGTAACCATTTCAAAAGCTAAATCAACGGCTCTTTTTCTTACCAAGTTCTCGCACTCCGCTACCAAAGCCAAAGACTGTGCTTCTTACCTTAAAGACGCACTCGACGAGATGAGAGATTCTCTCCGAACACTACGCAACATTAGCCGCGGAGTAGGCATTGATTCGGCAGCTCCGTCATCGGTGGAGATGTTTAGATTCAAGATGAGTGACGTGCAGACGTATATGAGTGCAGCTTTGACGTATGAGGATACTTGTACGGACGAATATGATGAAACGGATGAAGTTGGAGGGACTAAGACGGCTGTTTATGATCGGGTGAACAATCTGAAGAGGTTAACTAGTAATGCTCTTGCGCTTGTTAATAGTTATGCCAACAATGGAGCTCCATGAGATAAGATCATGAAATAAGCTCATGAAAGAGTTTTCTTAACCTTTTATTTA | |||||||||
gi|161566900|gb|EY938030.1|EY938030 RS2DF21TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence TACTTCCTCCGTTTCATAATA EST sequence (targeted fragment marked with yellow): GGGGAGCAAGAAGAAAAAAACCAAAGAAACTTTAAAAAAAAAACAGTGAACATAATGGGAAACAAAAATCTTAAGGCGACGTTGCTCCTCTTCACCACCTTTCTCTTCATTTCCCGATCAACCTCAGCCGTTCATTCTCCTCCACGACTAAACGCAACAACCAACGATCTAACTTTCATCCGAACAAGCTGCAACGCAACTCTATATCCAGACCTCTGCTTCAACTCTCTCGCTGGCTACGCCTCTGCCGTTCAAAACAGTCCCGCGAGGCTAGCCAAACTAGCTATCGGAGTAACCATTTCAAAAGCTAAATCAACGGCTCTTTTTCTTACCAAGTTCTCGCGCTCAGCAACCAAAGCCAAAGACTGTGCTTCTTACCTTAAAGACGCACTCGACGAGATGAGAGATTCTCTCCGAACACTACGCAACATTAGCCGCGGAGTAGGCATTGATGCGGCTCCGTCATCGGTGGAGATGTTTAGATTCAAGATGAGTGACGTGCAGACGTACATGAGTGCAGCTTTGACGTATGAGGATACGTGTACGGACGAATATGATGAAACGGATGAAGTGGGAGGGACTAAGACGGCTGTTTATGATCGGGTGAACAATCTGAAGAGGTTAACTAGTAATGCTCTTGCGCTTGTTAACAGTTATGCCAACTATGGAGCTCCTTGAGATGAGATCATGAAAGCGTTTTTAACCTTTAATTTAAATGTTTCTTCTGATATTATTTTTACTTTGTTAAATATTTCTTTGAAATTTAGTATGATGTTTTATAAACTTTAATCTAATCTATCATAGTTGA | |||||||||
gi|167437634|gb|FD943549.1|FD943549 RS2GP29JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence TACTTCCTCCGTTTCATAATA EST sequence (targeted fragment marked with yellow): ACGCAACATTAGCCGCGGAGTAGGCATTGATGCGGCTCCGTCATCGGTGGAGATGTTTAGATTCAAGATGAGTGACGTGCAGACGTACATGAGTGCAGCTTTGACGTATGAGGATACGTGTACGGACGAATATGATGAAACGGATGAAGTGGGAGGGACCAAGACGGCTGTTTATGATCGGGTGAACAATCTGAAGAGGTTAACTAGTAATGCTCTTGCGCTTGTTAACAGTTATGCCAACTATGGAGCTCCTTGAGATGAGATCATGAAAGCGTTTTTTAACCTTTAATTTAAATGTTTTTTTTGATATTTATTTTTACTTTGTTAAATATTTTTTTTGAAAATTTATTATGATGTTTTATAAACTTTTAATTCTAAATCTATC | |||||||||
gi|167448578|gb|FD955627.1|FD955627 RS3GB45TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence TACTTCCTCCGTTTCATAATA EST sequence (targeted fragment marked with yellow): GGGCCGGAGCAAGAAGAAAAGAAAACCAAAGAAACTTAAAAAAAAAAACAGTGAACATAATGGGAAACAAAAATCTTAAGGCGACGTTGCTCCTCTTCACCACCTTTCTCTTCATTTCCCGATCAACCTCAGCCGCTCATTCTCCTCCACGACTAAACGCAACAACCAACGATCTAACTTTCATCCGAACAAGCTGCAACGCAACTCTATATCCAGACCTCTGCTTCAACTCTCTCGCTGGCTACGCCTCTGCCGTTCAAAACAGTCCCGCGAGGCTAGCCAAACTAGCTATCGGAGTAACCATTTCAAAAGCTAAATCAACGGCTCTTTTTCTTACCAAGTTCTCGCGCTCAGCAACCAAAGCCAAAGACTGTGCTTCTTACCTTAAAGACGCACTCGACGAGATGAGAGATTCTCTCCGAACACTACGCAACATTAGCCGCGGAGTAGGCATTGATGCGGCTCCGTCATCGGTGGAGATGTTTAGATTCAAGATGAGTGACGTGCAGACGTACATGAGTGCAGCTTTGACGTATGAGGATACGTGTACGGACGAATATGATGAAACGGATGAAGTGGGAGGGACCAAGACCGCTGTTTACGATCGGGTGAACAATCTGAAGAGGTTAACTAGTAATGCTCTTGCGCTTGTTAACAGTTATGCCAACCATGGAGCTCCTTGAGATGAGATCATGAAAGCGTTTTTAACCTTTAATTTAAATGTGTCTTCTGATATTTATTTT | |||||||||
gi|167450297|gb|FD955742.1|FD955742 RS3GC81TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence TACTTCCTCCGTTTCATAATA EST sequence (targeted fragment marked with yellow): GGGGGGCTCAGATTCGCTTGGTGCAGTTCGGGACTGATTGGCTGACACAACCACATAGGTACTTTTGCCTTATTGGTTTGTAAGCATGGATTGGCTCCCGCCTTGCATCAACTGAATCGGAGCCTCCGATGGTGAAACGAGTCCAATTAGATCTGGAGAACAGTTTGATTCAAGTTCTAGGGTTTGGATTCTTACAATCCTCATATGATTTGATTTCTAAAGGTAGATAACCAGGATAAAAGAAAAAACGGTTTGACAAATCCACTGTATGATAAGAAGAAGATAGAGATCTCGTTACATGAGCAATCTCTTGTCTTGATTTTCTCTAAGAAGGAGCATTGACTTGGGTTTGCAGAGATGATTAATGGTTCTGCTTTGTTTTTCTTTTGGTTTTGTTAATGGGATCATCGGAGATGGGTTGCAGAGAAACTGGGTCCTGACTTTGCAGGAAAGGAACTTGACTTAGTCACATAGGCCGTGGGCACTACAAGCATTAGGTGGATGGGAGAATGAGCTTGATTACTGCCAAGAGCTCCTTGAAGCTGACGTCTTTAACAACTTTGCATGGAATCAGTATTATGAAACGGAGGGAGTAATTGA | |||||||||
gi|161578584|gb|EY950069.1|EY950069 RS3E809TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence TACTTCCTCCGTTTCATAATA EST sequence (targeted fragment marked with yellow): GGAAGGTCGTGCAAAGATGAACAAGAATTTGTTGTTGTTGTTCTTCGTCTTGTTATGTTTATTTCAAATAAGCAAATTAGGTTTCTGCTTAGAAGGAAAACCTCACAAAGGTAACAATGGATTGAAAAGCCATCGATTCATAAGTGTTACTAGTTTCGGAGCTGTTGGCAACGGGAAGACCGATGATACTAAGGCATTTCTTAAGGCATGGAAAGCTGTATGTAACGGAGGAAGTAGAGACAATAGACAGCTTCTAGTGCCTCTAGGAAAAACGTTCATGCTTAATCCTCTTACATTCGAAGGTCCATGCAAGTCTTCCTCCATCGCCTTTTTGATAAGAGGCAATCTTGTTGCGCCTGGTTACACTTGGCATGCGGGAAACTACCCTGCATGGATAAGTTTTGACAGTATCAATGGTCTAGTTATCACCGGAGGCGGCACCATCGACGGTCGTGGTTCTGTATGGTGGAGAAACGTTCAGCATCGTCCCACCGCAATGCATTTCAACAACTGTAATGGTCTTCACATCTCTAATCTCCGACACTTGAACAGTCCTCGGAACCACATAAGTCTAAGCTGCTCAGAGAACATCAGCCTCTCGGGTCTAAACATGACTGCACCTAGTGATAGTCCCAATACGGATGGCATAGACATATCGAACTGTAGAGGAGTCGACATACACGACTCTATGATTTCCACTGGGGATGACTGCATTGCCATTAACAGAGTTCTTCTATATA | |||||||||
gi|161568033|gb|EY939536.1|EY939536 RS2DW34TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence TACTTCCTCCGTTTCATAATA EST sequence (targeted fragment marked with yellow): GGAAAACAACATTTATTTTAACACAAAAAATTTTGCTCTAGAAAAACAAATAATTTGAAACGGAGGAAGTATTAAAAAAAAAAAAGAGGGAAATAAAACAGAATAAAATGAGGAAGTAGTAAAAGCACCGAAGAGAATTGCTGTGAGAAAACATCAAATGAAGAAGAATTGCGAGATCCGATCGAACCGCTTATCTGAGTTTTGTTTTTCTTAGTTCTGGATTACACAGACAGATCTCTCTCATAACTACCTGGTTTTGATTTTATCAAATGTCTAACGATTCAGCACGTAACCCACTGCTGCTACCAAAGGACCAGTCAGGAGGAGGTCCCACCATGGCACAAGACTTCAGCATTAACTCGAGAACCTCCTCCTCGAGAAAGAGAAGACTCCGCCGCTCTAGAAGCGCTCCTCGCGGCGACTTCGTGTACAACAACGACGACGTCAAAATCGACGAGCCTCCCCATCCTCATCCGAGCAAGATCCCAATGTTCAGAGACTTAAACCCGAATCTAAAACGAGTCATCCTCCTCCTGGCTGCCTACCTAACCGTCGGCACTCTCTGTTTCTACCTCGTTCGGAACCAGATCTCCGGTCACAAAACCAACGGCGTTTTGGACGCCGTCTACTTCTGCGTCGTGACGATGACGACCG | |||||||||
gi|156170064|gb|EW730210.1|EW730210 RS2B513JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence TACTTCCTCCGTTTCATAATA EST sequence (targeted fragment marked with yellow): TTCAACTCTCTCGCTGGCTACGCCTCTGCCGTTCAAAACAGTCCCGCGAGGCTAGCCAAACTAGCTATCGGAGTAACCATTTCAAAAGCTAAATCAACGGCTCTTTTTCTTACCAAGTTCTCGCGCTCAGCAACCAAAGCCAAAGACTGTGCTTCTTACCTTAAAGACGCACTCGACGAGATGAGAGATTCTCTCCGAACACTACGCAACATTAGCCGCGGAGTAGGCATTGATGCGGCTCCGTCATCGGTGGAGATGTTTAGATTCAAGATGAGTGACGTGCAGACGTACATGAGTGCAGCTTTGACGTATGAGGATACGTGTACGTACGAATATGATGAAACGGATGAAGTGGGAGGGACCAAGACCGCTGTTTATGATCGGGTGAACAATCTGAAGAGGTTAACTAGTAATGCTCTTGCGCTTGTTAACAGTTATGCCAACTATGGAGCTCCTTGAGATGAGATCATGAAAGCGTTTTTTAACCTTTAATTTAAATGTTTCTTCTGATATTTATTTTTACTTTGTTAAATATTTCTTTTGAAAATTTAGTATGATGTTTTATAAACTTTTAATTCTAAATCTATCATAGTTGAGTTTAGTGTGGGTTTGGATGC | |||||||||
gi|158947421|gb|EX909457.1|EX909457 RS3CO65JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence TACTTCCTCCGTTTCATAATA EST sequence (targeted fragment marked with yellow): CTCTTCATTTCCCGATCAACCTCAGCCGCTCATTCTCCTCCACGACTAAACGCAACAACCAACGATCTAACTTTCATCCGAACAAGCTGCAACGCAACTCTATATCCAGACCTCTGCTTCAACTCTCTCGCTGGCTACGCCTCTGCCGTTCAAAACAGTCCCGCGAGGCTAGCCAAACTAGCTATCGGAGTAACCATTTCAAAAGCTAAATCAACGGCTCTTTTTCTTACCAAGTTCTCGCGCTCAGCAACCAAAGCCAAAGACTGTGCTTCTTACCTTAAAGACGCACTCGACGAGATGAGAGATTCTCTCCGAACACTACGCAACATTAGCCGCGGAGTAGGCATTGATGCGGCTCCGTCATCGGTGGAGATGTTTAGATTCAAGATGAGTGACGTGCAGACGTACATGAGTGCAGCTTTGACGTATGAGGATACGTGTACGGACGAATATGATGAAACGGATGAAGTGGGAGGGACCAAGACCGCTGTTTATGATCGGGTGAACAATCTGAAGAGGTTAACTAGTAATGCTCTTGCGCTTGTTAACAGTTATGCCAACTATGGAGCTCCTTGAGATGAGATCATGAAAGCGTTTTTTAACCTTTAATTTAAATGTTTCTTCTGATATTTATTTTTACTTTGTTAAATATTTCTTTTGAAAATTTAGTATGATGTTTTATAAACTTTTAATTCTAAATCTATCATAGTTGAGTTTAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|156167808|gb|EW727954.1|EW727954 RS2A745JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence TACTTCCTCCGTTTCATAATA EST sequence (targeted fragment marked with yellow): ATTGTGAAATAACGGAGCAAATCAATTCAGAGAGGGTATAGTTTATGGTTATAGTTGTAAGTACAAATTAAGTTGAAACACTTGCTATACTAACCAATCACCCCATATGTTTGAATTTTTGTTTTTGTTTTGATGTAGTGAAAAGTAATGTCAAAATGTAAGAATGGGTGAGGGTTGTTATGATATACTCCCTCCGTTTCGTAATACTTGATGTTTTACCATAGTGCACAAAAATTAAGAAAATTGTATTTTTAACTAAAAAATATTTTAAAGATATAATTTTAAAATCAATTAACCAATAATAAAAAAGACTGTAAAATCTAATTGGTTGAACAGTTTCCAATAAAACTAAAGTAACCTTAAAATCTCAAAACTTCATCTAATTTGAAACAAAATTATCCTTCCAAAACATCAACTATTATGAAACGGAGGAAGTATTATTATCACTTTACCCAAAATTGATTTGAATCCGGAGTACAAAAGAACCAACTCCTGTACACTACCACTAGGCTACCAACACGATGAATACTAACCATGTGTGGTAATGTAATTGTGGTGAACTATATTTTATTTAGATAAGTATATCTTCAAATTTCTCTACTCTTAATCCATTTTTAGTAGATGTAAACACAAAAAACTCTCCCCAATTCAAGTAAGACGAGTCATTAACATAGAAGAAAAATTCAACTAGAACAAGTCACTAAGTTTGTGGTTGTGTGTGTGTGAGAGGGAGTGAGAGAGACAACATTCATGTTATTGTATCACATACTGTCAGAAATCCTAATA | |||||||||