| mature miRNA: TAGATACATCTGTATCTAGAC species: Festuca arundinacea database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|74450386|gb|DT706561.1|DT706561 s13dFA04G06ST040_100274 Tall fescue, Festuca arundinacea Schreb, stems Festuca arundinacea cD TAGATACATCTGTATCTAGAC EST sequence (targeted fragment marked with yellow): GGCACGAGGCACGGCGCCATCATCATCCGCCCAAAGTCCGGCTCCTACCCCTTCCCCAAGCCGCACCAGGACGTCCCCATCGTCATTGCTGATTTCTGGCAAAACGACCTTAGGCAAGTGCAGAAGGACTTGGAGAACTGGATCGCCGATGGAGATCATTCTAAAGATGGACCAGCTTCAGCAACCATCAACGGCAAGATTGGGGATCTTTACAACTGCTCTGGTACAACACTATTTCTTGCATGCACAGCATATATATGTATATGTTACCATTCCCTCCTTTCAATATTAGTTATCGCAAGTTCAGATTCAGATGTATCTATACATGCATTATCTGAGAATCCGAGGTCAATGATGCAGGGGTAGCCCAAGACGACACCTTCGTGCTCGACGTGGAGCCCGGCAAGACGTACATGCTCCGCCTTGCCAACGCTGCACTCAGTAACGAGTACTACTTCAAAGTGGCCGGCCACAGGCTCACCGTGGTCGGCTCGGACGCCAACTACCTCCGCCCCTACAACGCCACCGGCGACGTCGTGGCCATTGCACCAGGCGAGACGCTGGACGTGCTCATGGTCGCCGACGCCCCTCCGTGCCACTCCTACTACATG | |||||||||
gi|257189211|gb|GT049373.1|GT049373 CLS_cLiFproots_76a1_1_m11cLibkit5LD_G06 CLS_cLiFproots_plant Festuca arundinacea cDNA clone TAGATACATCTGTATCTAGAC EST sequence (targeted fragment marked with yellow): CAGTTCTTCCCCGCTCCTGTTATAGATAGTGAGCGTCTGAAGAGGTATGTGTTCCACAAGCTCCGCACTGAGTTGCCAGAGGGTCCGTTCTGCATCTTGTACGTGCACACAACTGTACAATCAGAGGACAACAACCCTGGAATGACAATCTTGAGGGGGATTTATGAAGAACTACCACCTGAATACAAAGAAAGGCTGCAGATATTATACTTCCTGCACCCTGGGCTTTATTCCTGGCTGGCCCTGGCCACACTGGGCAGGCTCTTCTTAAGCGGAGGGTTATATTGGAAAATCAAATATGTTAGTCGGCTGGAGTATCTATGGGCGGACATAAAGAAGGGCGAGGTTGAGATTCCAGATTTTGTTACTGAACATGACAAGATCCTTGAGCACCGACCATTGACAGACTATGGTATAGAACCTGATCCTCTGCATCTTGCTGATATACCTGCCACGGGTTACTCGCTTGGTAGGTATGAAGACAAATGGTCTCCTGAAGATAGGTGGCACTCTCGCAATTACATGTGACTTTTTGTGCTGTTGAAGGCTTGAAGTTTGATGTGTGTATAAATATTACCATGGTAACTCATACCTGATTGTTGTAGAAACCTTCTCCATAATACTGCCAAAAATTGTACTTCCTCCGTACTAAAATAAGTGTTTTAGTTTTGTCTAGACGCAGATGTATCTAGATCTATTTTAGTTGTAGATACATCCGTATCTAGAAAAAGTTGAGACACTTATTTTAGAACGGAGGGAGTAGCATGTATGACATATTAAATGAAAGCCATATTGGACATAAAAAAAAAAAAA | |||||||||
gi|74430836|gb|DT687011.1|DT687011 s13dFA59E10FM083_473662 Tall fescue, Festuca arundinacea Schreb, Floral meristem Festuca arun TAGATACATCTGTATCTAGAC EST sequence (targeted fragment marked with yellow): GGCACGAGGTGGACGAGGGAGTTGTTTTAGCTGATGGTAGCCATTAGAGAATGTGTTCTATGAGCTATTTGTTCATTTATGACTGCTTTAGGACAATCGTGCAATTAAGGTTTAATATCTACTCCATCTATTCCAAAATAATTGTCGCAACTTTATCTAGATGCAGATGTATCTATAAATGAAATATGTCTAGATAGGGAATCTAGACAAATCGGCAACATTTATTTCGTACGGTGGTAGTAATATTGTATCTAGTTGTAGCATGTATGGCGGCTGATCTACATCTCTGTTTTCTGTTCACAACTGGAATTGCTATTCTGTTTCATGAATTGAGAGAGCACATTTATATCTCTGGTTTCTTTTTCACAATTTG | |||||||||
gi|257190338|gb|GT050500.1|GT050500 CLS_cLiFproots_79a2_1_g24cLibkit5LD_D12 CLS_cLiFproots_plant Festuca arundinacea cDNA clone TAGATACATCTGTATCTAGAC EST sequence (targeted fragment marked with yellow): TGTTTATGTTTTCAGCTGGTGCCCTCAGCTATAGCATTAGGCAAAATGATCGTGGGAGCTTGAGCCGGTGGAAGCAGGAGAAAGAAACAATGTCACTAGGTCCTGGCCACTTCCTCATAGGTTCAACTGGGAGGTATTTGCTCATCTATAAGTTCAGAAGCTCATTGCACGCGTCAGGCTTCTACGCGCTGGACGTCAAAACATTCCAGCTTGAGAAGATGTGTGACGCTATGGTGTATGTCTACACCATAAGCTCCGCGCATATAGCAATTTCCCACCATCATTGTTGTCATTACCAACAATATCATGCGGTAAACTTTCTGTCGCATCCTAGTTATCTTCTCCTTTTTTTAATCACGCAGCTTGTCCAATGCATGATAGTCCATACTGTGATTGGTAATTCTTCTTTACATCACTTGATTGTTATTTTTTTGTGATTCTGGTAAGGCTAATGGAAGTTCAGGGAAATAACTGGATTATTGATTTATCTCATACTCCCTCTTTCCCAAAAAGGATGTCATAAATTTGTCTAAATTTAGATGGATCTATACACTAAACTTCGTCTAGATACATCCAGATTTAGATAAATTTGCGACATCTTATTTGGAACGGAGGAAGTATTTTTCATTTTAAGGTAATTAGACAAGTAAGATAAAGATCTTGCACATCATGAGTAACTGACATTCTTGAGGCCTCGTAGAATCGTAAGAACACTAGATCAAAACAGTTTGGTTTGGCAAAATGGTTTTTGTGGTCAAGCTAATGGATACGAGATACATGCCAAAATCCAGTTCAACTTTGGATTCTTTCACCTTGGTAACACTCGTTCTCGTGAAGCTTGACTTAATCTTGTTGTCTTCTTCTGTTTTCACAAATCAAGGAGGCGGAGAGGTTTTTTTTTGTCATCTTTACCAGGGTATACTTATATGGTGATGTTGATTTTACAAAAAAAATGCATAACTGATTTTGTAGTAAATACGAGGCTAATTCATTGCTATACTAATGCATCTCCTATATATGTTGTGAGCGAATTTGAGAGGTGCGCTTGAATTATTTTTTGCTCCTGA | |||||||||
gi|257191015|gb|GT051177.1|GT051177 CLS_cLiFproots_8a1_1_c15cLibkit5LD_B08 CLS_cLiFproots_plant Festuca arundinacea cDNA clone 8 TAGATACATCTGTATCTAGAC EST sequence (targeted fragment marked with yellow): AATCATGATGTTTGTTGATGAAATGTTCAAAAGAGTGCTAACTATTCGAGATTTAACTATCACAGTTCATCTGTGCGAATCAGCATGCATGTGTAGCTTTTTGTTTCTTGCAATTAGTGCAAATTCCTTAGGAGAAATAGAGATTATTTTATTAGAATCTGTGGCATGTTGACATCAGATCTGCACTTACCTTTAGGTTACAACCCTTCAGTTAGGGGTTTAGGGGTACATACCCAACCCTTCAGTCATGGAACCAACACCTTTTTCTCTACACGAATATATTTCAAAGAGAAGATTCAAGATTTCACACAGTAGGGTGTACAGTTGTCAACTAAGCCGCAATACCTTATAAACAATCAATGATACTACCTCTGTCCATAAAAGAATGTCGCAAAATTGTCTAAATTTAGATGTATCTAGACATTATTTAGTGTATAGATACATCCGAATTTAGACAAATCTTCGACATCCTTTTATGGATGGAGGGAGTATTTCCAACTGAAGATAGTGATCGTTGCTCCTTCAATAATCTACCAGTTTACTTGTTTCAGATTGTTAGCTTGATATATGGAATGATGAAGTTAGGTACTTTGTAGAATCTCTCTCCTCTGTACATAGCTAACCTGATGTTTTACAGGATCTTGTATTAACTAGAGAGTATACACATGTGTTGGACTGGCAGAACATACAGTCAGTAGGATAAGTTTAGTACCTTGTAACTCACTGTTAACATGGTATATGTCTAATAATATGACTGTTTTTCTTAACAGTCAAGACTGGACCTAGTTTTACTGAAGCGGCTATGGGACGGCTTGCTCAAGGAACTAAAGTCTTAGCAGAAGGTGGCTATGAGAAAATATTTAAGCAGACTTTTGAGATTCTTCCGGATGAGCAGCTGAAAATATCTTATGCATGCTATCTATCAACATCTGCTGCTCCTGTCATGGAGT | |||||||||
gi|74431835|gb|DT688010.1|DT688010 s13dFA28D11FM094_480182 Tall fescue, Festuca arundinacea Schreb, Floral meristem Festuca arun TAGATACATCTGTATCTAGAC EST sequence (targeted fragment marked with yellow): ACACTCAACACATATAATGATGAAATATCATGTACTCCGTCTATAAATAGATGTCTTATATTTGTCTAAATTTAGATGTATCTATACACTAAATAGTGTCTATATGCATCCAAAATTTGATAAATCTAAAACATCTATTTATGGACAGAGGTAGTAGTAACAAGTTTCCATCAGTACTACATACAGTAGGGTACGGGTGGTACCACCCGTCTCGCTTTCAACTTCATCTGTAGCTAGATAACAACCATTTACAATTCTTAGGGGTTTATAGCTTATATAGCGAACATAACATAGCCGCTTGGATGCAAAACACGGGTAACTCCTCTTGTCAACTTATGCACAAACCTAACTAAAACTTGCCCTCGATGTAACCGGCCAGACCATTGATTTTGAAAAACTTCTTTATCACAAGGGCCATAATAGCAAGAGTCAGCCCAAATGCAGCCAACGTCAACAGTCTGTCATGCTTTGGCTTCTGGATTGTA | |||||||||