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mature miRNA: TAGCCAAGGACAGACTTGCCGG
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|88306797|gb|CI671960.1|CI671960 CI671960 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro 

TAGCCAAGGACAGACTTGCCGG
|||||||||||| |||||||||
ATCGGTTCCTGT-TGAACGGCC

EST sequence (targeted fragment marked with yellow):
GATTGCAGAACACAGAAGGCAAAGTCATATGGATGACTGAAATCCTACATAGAAGCGGCAGTCGATGGCATGCATCATCTAGTGGTGCATATCCTAGAGAAGTTCCGAGAGAAGTATAGAGAGACTATTTGGTGCTTGTTATCACCCAATGCTAGGTATGAGTTATGGCTATCAGTGGCCACTCGTGAAATGAGATAGAGAACGGAATGCAGCCAAGGATGACTTGCCGGTACGTGTATGCATGTTTCAAGGTACTATATGTGCCCCCAACTGTTTTAGATCCATGCTGACATTTTCCGGCAAGTTGTCCTTGGCTACGTCTTGTTCTTTTTCTCTCACGTGAGGCCATTGCATGGTTTGCATTTAGCTTCCAGGTCATGCATGTANAGTGATGTATATCAATGTAAACCAGAAATATATT


gi|40489617|gb|BX899553.1|BX899553 BX899553 Oryza sativa library (Han B) Oryza sativa cDNA clone y699b10p5, mRNA sequence 

TAGCCAAGGACAGACTTGCCGG
||||||||||||||||||||||
ATCGGTTCCTGTCTGAACGGCC

EST sequence (targeted fragment marked with yellow):
TCCGCATCTGTGGTACCGGGAATTCGGCATTATGGCCGGGGGCACGCTTGCAGATCAAACCACATGATAGAAAAGCAGCCATGGTAGGGGAAGGAAGAAGAGAAGTAGGAAGAGTACCTGTACTGTTCAGTATGCAGTAGAACCACTGAGGCAGCTTCTGCTGGGTTGCCATGCGCTGTGAGGAGGAGAACGGGATGCAGCCAAGGATGACTTGCCGGCTCCTGGTATTGGGGGAATCTCAGCTTTGCTGAAGCGCCTTGGAGTTAGCCGGCAAGTCTGTCCTTGGCTACACCTAGCTCTCTTCTTCTAGCGTTTGGCTCTTGAGCATCCTCGAGGGCCATCTGTACCGTAGCTTGTTTGTGCCGACGATTTCCACCAAGATACATACGAATGAGTAAGTATGCAATGCTTAAAGACTGACTTATTACCTCAGAATCATGTCTCTTCAGCTCTGCATGTGCATTAGTGCATACATTACATGTTCAACATCTTGCTGTTCCTTCTGCAATGGACATGCATGAACTTGTAAGCAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTGTACAGGTGTGATGGGAAACCGGTTGGTACAAGTAATGCCTGGGTGATCCTTTGAGAGGGATAAGAAGGCACGATGTTTTAGATGGATGGCGGGAGGAGTAGGTAAGTGAAGGTGAGATAAGCTAATGGAGAGGATTAAGAAGTGTTGAGGTATATGGAACGGTATATGTGATTGGTCAGAAGGGAGGA


gi|117246863|gb|CT843706.1|CT843706 CT843706 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD 

TAGCCAAGGACAGACTTGCCGG
||||||||.||| |||||||..
ATCGGTTCTTGT-TGAACGGTT

EST sequence (targeted fragment marked with yellow):
ATCTGAACTCATCATTCTTCTCCTTCTCCTTCTTCTTCTTCCTCCTCTCATTATTCGCTGTGCCAGCTATGGTTAATTGCCAAAGATGAAATTAAGCAGCTAGCCGGGAATCGCCGGCGGCCTGACATTGGGATCGGAGGCCATGGTGCAGCCAAGGATGACTTGCCGATCGATCGATCTATCTATGAAGCTAAGCTAGCTGGCCATGGATCCATCCATCAATTGGCAAGTTGTTCTTGGCTACATCTTGGCCCCTGCTCCTCATGTAAGGCCGGCCTGTGGCGACGACGATCGAAGGCGAGCGCTTCAGCTTTGTTAATTAGCTCTTGTTCTTGGCCAAATCCAACGCAATTTTGCAAGCCTAATCGCAGTGTAAGTTAATTTGATGATCAGTTAGCTTAATTAGTTATAATTTGCTGCCATTCATGCGTATTTCAGATCGAGCGTACTGTATCATGTTAATTAGTAATCATGTTCTTCTATAATTTAACTTCAATTTGATAAAAAAGTACTACCTCCTCTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAGGCCAGCTTGGCCTCGAGGGGGGGCCCGGTAC