| mature miRNA: TATATTTTGGGACGGAGGGAG species: Triticum aestivum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|222365839|gb|GH726159.1|GH726159 G118.115G11R010926 G118 Triticum aestivum cDNA clone G118115G11, mRNA sequence TATATTTTGGGACGGAGGGAG EST sequence (targeted fragment marked with yellow): ATTTACCATGATAGCATTATCTGTTTGCATATGGCAAATCACCTCAGGGACAGACGGGGGTTATACAATACGCCCTTTGTCCCGAAATATAAGAGCGTTTGGACACTAGTGTAGTGTCAAAAAAACTCTTATATTATGGGACAGGGGGAATACTAATCAAACATAAGCTAACCCGGCCGAATGACAATGCTACGATGATCTCTTGCCCGAACAAAAAATGTTTTCAAGGACGGCAAATCTGATATGCCTCCCTTTCAAAATTTACGAGGCCTTTATAGGTGGGAAGTACCAGCAAAAAGTTAAAGGCCATCAAGGGGGTTAGGGAAACTCATGAAAATGATGCACCCCTCAAAACCAAAGGAAAAATAATACTCATGGGTTCGTTTCCTGACACGCCCGGTGGTCATGAACATTCCAACTCCAGGCCCAGACCTCAAGGGAAAGAGGGAAAAGAGTGGGATTCATACAAATACGGCAATTCCAAATTTTCCTGTGGAACCAACCCGAAAAAAATAATCAAAATCCAGAAAAAAACAAGAAGAAAAAAGGGGAAAAGAATCCGGGACAAAACTGGAAAAACACGGAAATATAATCTGAAAATATAATCGGACCGTAAAAAAAGAAAAAAAAAAAAAATTAGGTTGGAAGAAATAAGAAATATAAAGGAAAAAA | |||||||||
gi|143793808|gb|CJ959736.1|CJ959736 CJ959736 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul20n2 TATATTTTGGGACGGAGGGAG EST sequence (targeted fragment marked with yellow): GTCAGAGGTGCGTGCGTTAATAGAAGGCCAGTTCATGTCCATGAGGGGACATGCCGAGAGGTGCGGCCTGCCGGTGCCTCCGAAGCGGATCATAGCAACTGGTGGCGCCTCGTCGAACCAGGCCATTCTCAAGACGATGGCGTCCATTTTCGGCTGTCCGGTTTACACTGTTCAGAGACCAGACTCTGCCTCGCTGGGTGCTGCTCTGAGGGCAGCCCATGGGTGGCTCTGCAAGCAGCGCGGCGAGTTTGTGCCGATCTCACGCGTGTACTCGGGCAGATTGGATAGGAAATCGCTCAGCATGAAGCTGGCTGTTTCCATTTGGGGGCTGCGAGGGGGACGATGAGCTCCTGAACAAGTACGCGTTGTTGGTGGAGAAGAGGCTGGAGATTGAGCAGAAGCTTGTGGAGAGGTTTGGCCGTGTGAAGTAGCTTGTTTTGGGGCAACATTTCTCTGTGGATATTGAAAATCGCGTCGACGGTAGTGGACCTCTGAAAATGCATCTTCAGAGAAGGATAGTAGAGAAATTGGATCAGGACTTGAGAAGTGCAGGTGCAGCAGGCAGTAGCTGCCTAGTTTAGGCATGGACAGTCACCATGGTAACATCGTTTCATGGGTAAGGATTTGTATTTTACGGATTGAGCATGGAATGCTTCTTAAGTACTCCCTCTGTCCCATAATATACGATCTAAACGCTTTTAGATCACTAAAGTAGTGATCTAAATGATCTAAACGCTTTTATATTAGTTTANCTAGGTAGTATATCATAAGT | |||||||||
gi|143795074|gb|CJ961002.1|CJ961002 CJ961002 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul24p2 TATATTTTGGGACGGAGGGAG EST sequence (targeted fragment marked with yellow): ACTGTNGGATGCNAAGGACCACACAAAGGATATCAAGTTGTTTATTAATTCACCTGGAGGCTCCATTACTGCAGGAATGGGGATTTATGATGCCATGAAATTTTGCAAGGCTGATATCTCAACTGTTTGCTTTGGATTGGCGGCTTCCATGGGTGCATTTTTGTTAGCTGCTGGGACAAAGGGAAAGAGATTTTGCATGCCAAATGCGAGAATTATGATCCATCAGCCATCAGGGGGAGCTGGTGGGAAGGCCACAGAGATGGGATTGCAGATAACAGAAATGCTCTATGAGAAGATAAAGATCAACAAGATAATGTCAAGGATCACTGGAAAGCCTGAAGAGCAGATTGACGAGGACACGAAGTTTGACTGTTTCATGAGTCCTTGGGAGGCCAAGGATTATGGAATAATTGACAGCATTGTAGATGAGGGCAAACTTGGATTGGTAGCTCCTGTATCGGGAGCTGTGCCACCCCCAAAATCACGTGTGTGGTACTTGTGGAACGCTTCAGGACCAACTAGAAAAATAATGAAAAATCTACCTTCAGAGGAAAAGCTCATTCGAAATGGCAATGGCAGTGTAAGTGGAGCTGATGGAATGCTGAAGGAGGCCTCATCAACTTGAGATATGTCTACCAGCTTACAGCATCACCATGGGTTTAGGATCAAAGATGTGGCTTGCTATACAGGCCAGAGCATACAATGTGCAATTTTCAGGGTGCAGGTCTGTATGCCTTGCCGGTACTCGAAGATTGACTGTAGTGCTGTTTGTATGCTGTATTGTACTCCCTCCGTCCCAAAATATAAGAACGTTTTTGACATTATGCTAGTGTGAAAAACATTCTTATATTTTGGGATGGAGGGAGTATTATTTTTCCCTGTATACCGGT | |||||||||
gi|143799745|gb|CJ965666.1|CJ965666 CJ965666 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul39l0 TATATTTTGGGACGGAGGGAG EST sequence (targeted fragment marked with yellow): GGGACGAGACCGAGAAGTACAGGAAGGAGGAGAAGGAGCACAAGCNCAAGGAGCACCTCGGCGAGATAGGCACCCTCGCCTCCGGCGCCTTCGCCATGTACGAGAAGCACCAGGTGAAGAAGGACCCGGGGAACGCGCACCGGCACAAGATCGAGGAGGAAGTGGCCNCGGTGGCGGCGGTTGGCAGCGGCGGGTACGCGTTNCNCGAGCNCCNCGAGAAGAAGGAGTACAAGGAGTCGGCGGAGGACGGCGAGGACGAGGAGTCCNGTCGCGGCGAGGGGAAGAAGAAGCNCCNCTTTTTNGGNTAAGCTAGCCAGCTGCTGCTCAGCTAGCTGCTAGCAACGCATACGCGCGAGCGTGCGTCCAATAAGAGCCGGGAATTTGTGCGTATATACGGCTCGTTANATATATGTATGTACGTTTGGTCGGTGTGCGTGTTTTTTTTTTTGCATGGGTGTGCGTGTGTTGCTGCTGCGTCCTGCGTGCATGTTGTGTGGAGTATGTATTTAACTTGCTGCGTGTCTACGTATGTACTTCCTCCGTCCCAAAATTTTTGTCTTAGATTTATCTATATACGGATGTATTAAGTCACGTTTTAGTATTAGATACATCTATATCTA | |||||||||
gi|143795382|gb|CJ961310.1|CJ961310 CJ961310 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul25p2 TATATTTTGGGACGGAGGGAG EST sequence (targeted fragment marked with yellow): GGNTGATATNTCAACTGTTTGCTTTGGATTGGCGGCTNCCATGGGTGCATTTTTGTNAGCTGTTGGGNCAAAGGGAAAGAGATTTNGCATGCCAAATGCGNGAATTATGATCCATCAGCCATCAGGGGGAGCTGGTGGGAAGNCCACAGAGATGGGATTGCAGATAACAGAAATGCTCTATGAGAAGATAAAGATCAACAAGATAATGTCAAGGATCACTGGAAAGCCTGAAGAGCAGATTGACGAGGACACGAAGTTTGACTGTTTCATGAGTCCTTGGGAGGCCAAGGATTATGGAATAATNGACAGCATTGTNGATGNGGGCAAACTTGGATTGGTAGNTCCTGTNTCGGGAGCTGTNCCACCCCCAAAATCACGTGTGTGGTACTTGTGGAACGCTTCAGGACCAACTAGAAAAATAATGAAAAATNTACCTTCAGAGGAAAAGCTCATTNGAAATGGCAATGGCAGTGTAAGTGGAGCTGATGGAATGCTGAAGGAGGCCTCATCAACTTGAGATATGTNTACCAGCTTACAGCATCACCATGGGTTTAGGATCAAAGATGNGGCTTGCTATACAGGCCAGAGCATACAATGTGCAATTTTCAGGGTGCAGGTCTGTATGCCTNGCCGGTACTNGAAGATTGCCTNTANTGCTGTNTGTATGCTGTATTGTACTCCCTCCGTCCCAAAATATAAGAACGTTTNTGACATTATGTCTANTGTGAAAAACATTNTTATATTTTGGNATGGAGGGAGTATTATTTTNCCTGTATACCGGTGAT | |||||||||
gi|143800537|gb|CJ966458.1|CJ966458 CJ966458 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul4d20 TATATTTTGGGACGGAGGGAG EST sequence (targeted fragment marked with yellow): GCGATCAGCAGCGGGGCCGCTCCTGCGCGAGGCCATGTCGACGCCCGTGCTGATGGTCACAGCGGAGCAGGCGCTGGTGGAGGTTGAAGGCCACTTTCAGCTCGTGTCAGGCCTCCCGGTTGTCGACAGCGCTCGCAGATGCATCGGGGTCGTCGTCAAGAGCGATCGTGTGAGGGCTTCACATGGGTCGAAGACGAAGATTGCAGATGTGATGACATCTCCAGCAATCACGCTATCATGCGATAAAACAGTGACCGATGCCGCAGCTCTGATGCTCAGGAAGAAGATCCACAGATTACCGATAGTAAACCAGGACAATCAAGTAATAGGTGAGTAACAGAAAACACGACAAAACCGGCAGTAATGTAGTGTTTTTTACACTAATGTAGGAGCGTTTTTTATACTACTCCCCCCGTCCCATAATATAAGAGCGTTTTTTACACTAATGTAGTGTCAAAACGCTCTTGTATTATGGGACGGAGGGAGTAGATCTGTATCATCCCCTTAACATCGACTATTGTTTGGAGTATGTTTCAAGCTTAACAGGATATTCTAAACACTGCTAACAGGTATAGTTACCCGCGATGACGTTCTTCGCGCGTTGGAGGCCATGCTGAAGTTTTAGTGATGCAGGAGTCCATGCCCGGTACTTGTGGATTTTGTAAATATGTGTGTCCGCGGTACTTTTGAGTAGCAGGCAGATCTATAGTCTGTAAAAGTGTAGTAGCCTGTATCGCAAAAATAAGCCTGGGAACTTTTAGGAGAGCTTTTCCTTGTAAAGAAGCACGCCCGGAAGCTTCTGCTCTGT | |||||||||
gi|239860757|gb|GR303050.1|GR303050 WRIS_1193 cDNA library of a compatible interaction between stripe rust (Puccinia striiformis TATATTTTGGGACGGAGGGAG EST sequence (targeted fragment marked with yellow): TTGGTCCCGGGAATTCGGCCATTACGGCCGGGGGAAGGTGAAGAATTCTGTAAAAGGACTTGAGTTCTTTCAGCTTGTTGCTGCTGTTGCTGAGGAAGAAGGTCACCACCCAGATCTTCATCTCGTCAGTTGGAACAATGTGAAAATCGATGTCTGGACTCATTCAGTCAGAGGTTTAACAGATAATGACTTCATCCTTGCTGCAAAGATCAATGAACTCAAGCTAGAAGGCCTTTTGAGCAAGAAAAAGGCTACTTCCCATGAGTAGCTTTGGGAGATCAAGCAAATGACCCTTTTTTTGCATGCTCTCTGTTTTACTACCTTCGTCCCATAATATAAGAGCGTTTTATACACTAGTGTAGTGTCAAAAACGTTCTTATATTATGAGAGTAACTTTTAATGTGTAGACCCCAAGAAATGTCCTTTTATATTGTCTGTGATGATTGTACATGCCGTTCCAAAATGAGTACTTCCGATGTGAATTCCC | |||||||||
gi|222362789|gb|GH726224.1|GH726224 G118.125J08R011115 G118 Triticum aestivum cDNA clone G118125J08, mRNA sequence TATATTTTGGGACGGAGGGAG EST sequence (targeted fragment marked with yellow): ACTGTTCTAACACTGCACATCCGGGCAAATTTTATACATACAACATACTCCCTTGGTCCCAAAATAAGTGTCTCAAACTTTAGTACAACTGGACCGAGGGAGTATTACTTTAGTACAACTTGACCGAGGGAGTATTGTGTCAGGTAACCATTTTCGAAAAGCTGATAAAACCTCTGGCAAAATGAAAATCACTCGCCAAGGTGAAAAATACAACTGTAGTGGCTTGAATGTGCTTACAGATCATTCACCAGTGTAAACGGTTCATTATTTTGTATCAACACCATCACAGCCTTAATCCACAATTCAAAATACAAGTTACTGTCACAACTAGAGGTTGACTACTGCTACGTCAAACATGAAAAATATGGGCTATATACCTAATGTTTACAGAAACAGAAAACAACTTCCTCGACAAAATGTTACATGTACAACCCTATTCATTTATAGATGTGATTCCTCGAGCGCCTCTCGCCCGTCATGGCGGATATACAGGATCATGGATGTAAATGAAGAGGGGGAATACTAACGAAGACATAGCATTCCGGTCCAGCAAAAGAATAAAAAACGGAGTTCATCATTCATCTTTACGTCAGGCGTTGGCAAATCCTTAGATTCAGAGGAGAAAGAGTCTGGAGAAAGGAACAGGAAAAAAGCCTCCCCGAAACCCCTGGGTTTTCTTTTGGAAAAAGG | |||||||||
gi|143800401|gb|CJ966322.1|CJ966322 CJ966322 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul40m2 TATATTTTGGGACGGAGGGAG EST sequence (targeted fragment marked with yellow): TNCCCTCAAACGTAGCAATTCCATTCTATCCAGCTGCTGCTGCTGCCTACTGGGGCTGCATGGTTCCGGGAGCCTGGAACACTCCATGGCAGCCGCAGCCGCAGCCACAGTCTCAGTGTCAATCTAACTCACCACCTAGTGCTGCTTCTCCGGTATCGACAATGTCCAGTTGCTTCCAATCCCGAAAGCATCCTAGAGATGGTGATGAGGAAAGAGATACCAAGGGTAATGGCAAGGTGTGGGTGCCCAAGACGATCCGGATCGATGACGTAGATGAGGTGGCCAGGAGTTCTATCTGGTCACTTATTGGGATCAAGGGCGACAAGGTGGAGAAGGATGATGGCAAAGGCTGTAAGCTTGCAAGGGTTTTTGATCCAAAGGATGAGGCAAAGACGTCAAGCCACAGAGGTAACAATAGCTTGCCATTCTTGAAGGGGAACCCAGCTGCACTGTCGCGCTCAGTGAACTTCCAAGAGAGATCTTGAGCACCATCTGGAAATTCTTCATGCTGCCTTCTGCTACTATAAAACCATGTAGCATGATACAGCTGAAATTTTGTACATTAGATAATTGTATACTACTCCCTCTGTCCCATAATATAAGAGTGTTTTTTAGACTAGTGTACTGTCAAAAACGTTCTTATATTATGGGACGGAGGGAGTACTAGATAAGAGACATGGAGTGTTCAACATAGCTATAATCAGATCC | |||||||||
gi|222366760|gb|GH727106.1|GH727106 G356.113D22F010920 G356 Triticum aestivum cDNA clone G356113D22, mRNA sequence TATATTTTGGGACGGAGGGAG EST sequence (targeted fragment marked with yellow): CCACGCGTCCGGGAAGGTAATGGTGGGTGTATGATACCGGCGAAAGGTGCGCGGTATTAGAGAGGCTCGCAATGGTGGAAGGGTGAGAGTGCATATAATCCATGGACTCAACATTAGTCATAAAGAACCCACATACTTATTGCAAAAATCTATTAGTTATCGAAACAAAGTACTACGCGCATGCTCCTAGGGGGATAGATTGGTAGGAAAAGACCATCGCTTGTCCCCGACTGCCACTCATAAGGAGGACAATCAATAAATACATCATGCTCTGACTTCTTAACATAACGGTTCACCATAGGTGCATGCTACGGGAATCACAAACTTCAACACAAGCATTTCTCAAATTCACAACTACTCAACTAGCACGACTCTAATATCACCGTCTCCATATCTCAAAACAATTATCAAGTATCAAACTTCTCTTAGTATTCAATGCACTTCATATGAAAGTTTTTATTATATCCCTCCTGGATGCCCATCATATTAGGACTAAATTCATAACCAAGGCAAATTACCATGCTGTTTAGGACTCTCAAAATAATATAAATGAAGCATGAGAGTTCATCTATTTCTTCAAAATAAAACTACCGCCGTGCTCTAAAAAGATACTTCCTCTGTCCCAGAATATAAGACGTTTTGACACTATGCTAGTGTTAAAGACATTCTTATATTTGGGGACGGAGGGAGTATAAGTGAAGCACTAGAGCAAATGACAAACTACTCCCAAAGATATAAGTGAAGATCAATGAGTAGTCGAATAATAATGCAAATATGTG | |||||||||
gi|222365319|gb|GH726333.1|GH726333 G174.101J12F010821 G174 Triticum aestivum cDNA clone G174101J12, mRNA sequence TATATTTTGGGACGGAGGGAG EST sequence (targeted fragment marked with yellow): CCACGCGTCCGGTTGATGTTAAGGGGATGATACAGATCTACTCCCTCCGTCCCATAATATAAGAGCGTTTTTGACATTACATTAGTGTAAAAAACGCTCTTATATTATGGGACGGGGGGTGTAGTATATATAAGTCCTTTACTGCT | |||||||||