| mature miRNA: TATGATGCAGATTCTTCA species: Physcomitrella patens database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|208385339|gb|DC915139.1|DC915139 DC915139 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp TATGATGCAGATTCTTCA EST sequence (targeted fragment marked with yellow): ATGCATGGATGTGGCGAGCTGTATGATTTGATCGAGTTTGTTGGCATCGGGTACCAGATGCGAGGCTTGGAAACGGAGAATTGAGCCCCAGGGGTAGGCGATTGGGTAAGCATGGGAGGGGGAACGTTGTGGAAGAACGTTGCGCGGGCTGTTGGGGCTGCGGCTCCGACTGTGGCTTTGACACCCACCGCTGCTCATTGCAGCGCTTGCACTGCGACTCCAACAGCGTCTGCTCGCGCGGGAGGAGCATCGTGTAATTGCAAGACGGCTGGAGCCGTGCAGGTGCAGCCTGGATTGACCCCTGTGAGCTACGGGCCTCGACAGTTCTGGGACCTCGAAGATTGGGAATTTGCAGGGGATGAGGAGCGGGACCGTTACGTCTTTGGATCGCTTCCGACCGTGGAGGAAGTTGAGGATGCGTCGTCGGAACTTCAAAATGCTCTCAGCTTGGGCCTCTTCACACCCCCTGTCCCTAGGTCTGAGACGCTGCCTAAACCGGAACCATCTTCACCACGTAGCCTAGATATTCTTGAGGTTACGGAGGTGTCAACTGTAACAACAGTTGGGATGAAGGAGGAAGATGTTACGTCGGACCTTTCTGCTCACTCTATCGAGCCTGACCTTTGGTTGGAACCCCCACCGTACGGAATGACGACAGTCTCTGATGAGCTGAAGGCTTGGAAGGANCTCCATCATGCGAGGCGACCACGATCTTTGAGGAGCNAAGGCT | |||||||||
gi|208399854|gb|DC925164.1|DC925164 DC925164 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp TATGATGCAGATTCTTCA EST sequence (targeted fragment marked with yellow): TTTGAAGCATTTAGATGGCCTCTAGTTTAGTAGCTATCCCAATCGATGCTTTTGGCGTGGTTTCATGTGTGGTCCTGGTGGAACATCTCTCAGACCTTGATTTTGTATTTGTTTATTTTGGTATGTCTCACGATAACTAAGAAGTTTCAGTGCAAGGAGATGAGAATCTGCAGCATGGTGTCATGGATTGACTACTGGTTACCGTGGTAATCAAGCGGTAATGTCTATCCTGGTGCTAATCACAGACCTCTCTGGTCATTTGTGATAATACACATTTACGAACCGAATGGCTGAGGCCTCTTCGAACAAATGACAAGCCATGAGAAACTTACTTCTTAGGCGGACAAGAGTTTCATGGGAGATGAAGGAGAGCTTCATACTGTTGCTTTGCCAAGGTTCACTCCGTGTTCGCTTGCCTGGGGTTGCCCTTTCAAGGAAGAGCTGATTCGTGCGAACGCAACATCTCGAAATTCTCACATGGGTGTGTTCGGTAGTTTTCATGTGGAAAATTGTTTCAACAATCAATTTTCACGTTGTTTCGAATCTTGGCGCAGGTGAGGTCTTTTTTTGGGTTGAATAAAAAATATTTAATTATCTAGAAAGATTTTTTTTACATTCGCTTTGNGAATTCATTCTTTTTATTAAAGAC | |||||||||
gi|208395593|gb|DC929008.1|DC929008 DC929008 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp TATGATGCAGATTCTTCA EST sequence (targeted fragment marked with yellow): CTCTCGTCGCTCGGGTACGAGGCGCTGAGGGCAGATATTTCGTGTGTTGGACCGAAACNGGCGATGATGTGTTGNGTTCGGATGATTTGAGCGGCGTGATGGGATCGTTAGGTCAGTGCTTGTCGTTGGAGGATCTTTTGGCCATGGTTGAGACTGCTACTGGCTCGGATCAGCGGAAAGTCAACTTTGAAGACTTNTGCCAGCTGATGAGTTCTGCATTAGCGGAATTGCGTTATGTTGCTTCTCAATCCGCTACTATTCGGATNTAATTTCCGGATTCAGACTACCTACCAGAGTAATTATGAAGCATGATAATGGATCTGCATCATTATCCACGCCCGTGCCCAAACTNGTCACTGTTTGGAGGTAGACAGGACACGTGAAGTCGCCTTCACGTTTCTGGTGTTTCATCTCGATTTTCGCAGGTGACACCGNTGGATCCTGTTACAGGAAGGTACCGTTCTAAAGGCTAGACGCGTGTGCATTTTTCCAACGAAGACCTCATCAATGCTCNTACGGCACAATTNTACAAAAGACGAAAAAAAAAACTTTCAGGGAGTGCACTCCTGTTTCATACGATTGTTCCAAGGCTTAGAACTAGTTCTTCCCTGAGTCACTGTACGCTAGATGTATTCGTTCTGGTCGGCTATTAGAGCTTAGTGATATAGTTTCTGCTATCTAAATGGTTGTGAACTGCGCTACCGCCTTCAC | |||||||||
gi|208385466|gb|DC953085.1|DC953085 DC953085 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. paten TATGATGCAGATTCTTCA EST sequence (targeted fragment marked with yellow): GGGATGTNTGATCAGCTGGCTGGTTGTTGCGTTGAAGCTGGCGGACAAGNTGTACAGAATGCAACTCCTGGAACTCATTCACCAACAGATTTTAGCTGTACACGGTGTGCTACCTTTGTGGAGGGCTAGGGCATTACTGTTTCGACAATTCCCATAAGAGCGCGTGTCGGTAGGCGGGTACTGCAACGTTGCCGAACATCTGGTAGCTCTTACGATGCATATAAATTGTACTGAAGAGCAGTTGTGCGCTCATCCGAAGTTACTGTTCATACATCTGCTACTCGTCTGGTTTTTGGTATCCTGCACAATGTACGCCATGCTGAAGATAGCGAGTGACGCGGATCTCCACACAATATTCAACTTCTTCTGGTTTATGGCTTTGCTACATAATTCCGTCATTGAAGGTATGAAAATCTGTATCATAAGACCCTGATACTCGCTCTATTGGTACAAGCAAATCCTTCTTTACTTAGAGCACCACAGACATCTTCACTAGCCTGTGTTAAGGGTCCACATGTTGCAACTAGGTTTGACCTGCTTGGAAATTCACGATACTAGATGCAAGTGATTGCGAAGCAATTGGCAAGATCCTCCAACATTTACCAACAACATGTAAAAATCTGT | |||||||||
gi|208400417|gb|DC908644.1|DC908644 DC908644 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp TATGATGCAGATTCTTCA EST sequence (targeted fragment marked with yellow): AGCAGTCTGCTCCGCTGCATTCCCAATTTTGTGTGTCAAGCGTACCGCGGTTGTTTGAGAGTAGACGTGGGCGTGCTTGTCGGAGGCATTTTTGAACCTCATTTGAGGATTTCCAGAGGATAAAATGGCGCTAGTACAGTGTTTGCAGTCGCAAGTTCTGACATCGAGCTCCAGTCAACAGGCGATTCTGTGTGAGAAGTCTTCATCATGCTCACCCCGTTTGTTTCTAGTTCCTATCACCAGTTCCTCTTTCTCTTCCTTTCTGGCGGCTCCAAACCACGCCTCTTCATCTTTATTATTTAAACGTCTTTCAAGCGATTCCTTTTTGGGCGCACGCTTATCCAAAATTTCTAGTCACACCAAAAATGTATCTGGCCAGCGGTACTTGCGCACAATAGTACAAGCTAATGATTCGACAGCAGATGAACCCCTCCCTTCAGATATGTCGTTAGAGAATGCTTTGCAACTGCTTGGAGTTAGAGAGGGTGCATCTTTTGAAGAAATATTAAGAGCTAAAAAGGTGATGACCGAGAAGAGCGGTGGAGATCAAGAACAAATTGTGCAGGTCGAGGCAGCATACGACATGTTATTGATGCAAAGTCTGTCACAACGACNAGCTGGAAAAGTTGTTGATAGCGCTGTCCGATATGCTGACGTTAGAAAGCCTAAGTCCTCTGGCGGA | |||||||||