| mature miRNA: TATGGAACGGAGGGAGTACAA species: Solanum torvum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|261676973|gb|FS111346.1|FS111346 FS111346 library TVR Solanum torvum cDNA clone TVR12B13 3', mRNA sequence TATGGAACGGAGGGAGTACAA EST sequence (targeted fragment marked with yellow): TGGCAGGCGCGGGCCAGAGAAGAAGTCTTGCAAGTCTTTGGGAGTCGGAAACCAGATTTTGATGGATTAAATCGTCTAAAAGTTGTAACGATGATCTTGTACGAGTCATTAAGGCTATATTCCCCAATAACAACACTTACCCGGCGGAATTATGAAGACATTACGCTAGGAGAACTATCTCTACCAGCTGGTGTACTAGTTGCATTGCCAATGATCTTATTGCATCGTGATAAAGAGATATGGGGTGAAGACGCAAACGAGTTCAAACCAGAGAGATTTAGAGATGGAATATCAAGTGCAACAAAGGGTCAAGTCACATATTTTCCATTTGGTTGGGGTCCTAGAATATGCATTGGACAAAATTTTGCCATGTTAGAGGCAAAGATGTCTCTGTCCATGATCCTACAATGCTTCTTTTTCGAATTGTCTCCATCTTACACACATGCTCCTATATCCTTGGTAACCACTCAGCCTCAGTATGGTGCTCCACTTATTTTCCATAAACTATAGTTCTCTTAATCCTCCACGAAAATGAGCGGTAGAAACTACTCCCTCCGTTTCATATTGTGTGAGTAGTTTTGACTTGACCTGTAATTCAAGAAAGTAGAAAGATTTTTGAATTTTGGC | |||||||||
gi|261639573|gb|FS119811.1|FS119811 FS119811 library TVR Solanum torvum cDNA clone TVR26G09 3', mRNA sequence TATGGAACGGAGGGAGTACAA EST sequence (targeted fragment marked with yellow): ATAACGTTGGAAAATACCGTGCCTTCAAGTCTGTGCCGCTGCCTTTTAACTATGATGAGGACAAGAGTCAATAACTATGTTTAGCTGATACCAGGAAATCGAAAGAATCCAGAGTACTCAAACACTCAAAATGATTTGCTGGTTTTTCTTGTACTCCCTCCGTTCCATATTAAGTTAATTGTTGTCATTTCACACATATTAAGAAAAAGAAACAAAGACAAAATTTAATCATGTTTTTCCATTTTTACCCTTTTCAAACTTCACACATTCATTTAATGCATTATTTATTTCTTATACAAAACTCAACCTTAGAAACTTAATTAATGAAGGGTAAAATTGGGAAAAAATTCCAACACATCCCTTGAAAAGTTAACAATTAACTTATTTTGAAACATCAAAAATTCCCTAACAATTAACTTAATATGAAACGGAGGGAGTATAATTCTTTGATTCCTTTCTCAATGGTGTTTATAATATAGTTTTGTTTGTGAAATTATACGGTGAGGGTATAGGACAAAGGAAAGTTGAATCCAGTCTCTCAATCAAGTATCCAAAGCCAAGAGGCTGATAATGTACGTTTTAAATGTAATTGTGCTTCATAATTAGTTTTGCTTTTCGGAACACAATACG | |||||||||