| mature miRNA: TATTTATTTACAGAGGGAGTA species: Leymus cinereus x Leymus triticoides database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|159758860|gb|EG391594.1|EG391594 BG01027A1B05.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TATTTATTTACAGAGGGAGTA EST sequence (targeted fragment marked with yellow): CGATTTTTTTTTTTTTTTTTTGATCAAAATCACCAAGTGCAGAATAATACTCCCTCTGTAAAAAAATATAAGAGCGTTTAGATCACTACGGAGGGAGTACATTCCTAAAATGAGACAGCCCCTTCTGTTCCTTTCAGACCTCATCTTGTACCACCAAATACAGAATAGACCTACCCTAAACACCACAGAACCCAAACACCACACTAAACATTCGATCCAAGAACACCTTCCCTTTCACACCACCCACTACAGGGTGATCATCATCATCGTCCACACAGTTCAGTAAGAAATATAGTTCAGACCAAAGTCTTAACACCACCACCCACAGTGAGTGGCCTTTTGTACAGGCAAAGAGCGAGCTTCCGGTTTCACCGCTCGCAAGCCTAGAACTGGAACCTGCTTGGCTGGGACTTGGTCATCCTGGCCATGCCGTACGACTCGTCGTTGTCATCCCTCTTGGCGTTGCGGAACGCGGCGCAGCCGGCGACGTACACGATGACGAGGATGATGAGCACGACGATGTTGATGATGGCCACCTTGCGCCAGCTCTTCTTGATGCCCGCGAGGACACCAGCCTTGCACGAGTCGCACTGGAAGCAGAGCGTCTGCTGGTCGTTGCTCCACTTGAGGCAGTCGGGGTCGGTCACCACGGTGGGGACGCCGGGGTTCTGGCTCCAGAACGTCTCGTTGT | |||||||||
gi|159757635|gb|EG391574.1|EG391574 BG01030A2H11.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TATTTATTTACAGAGGGAGTA EST sequence (targeted fragment marked with yellow): GCATTTTTTTTTTTTTTTTTTTTTTTCGGACAACTGATGTTTGTCAGTATTCCATTCTCAAGCAGTACTCCCTCCGTAAAGAAATCATTACAAATCGCACCTGAACATGCAACATCAAACGGGGTCCAAGTTTATTTACCGAAAGGACCAATACTCTTCGAATCTAGTACGTACGTACAATTTTCATAGTTTCTCATCACCCGCGTTGCACCCTTCGTTTAAAACCCGCTTCACCTTGTCGAACATCTCCTGGATTTGCTTCCTGGAATGCAGAGGAGAAGGGTACATGCACGCGCAGTCCAGCTGCCCGTCCCTGATAGAGTCAAACACGCCGATCGACGGACCGATGCCGTGCACGGTGGCGCAGTCGAGGTACTCCTCCACGCCGGCCTTGCTCTGCAGGTCAGACAGGTCGTCGTAGGTCACCGGCTCCTCGAACAGGGAGACGAGCGTCGTCCGGAGCGCGGAGGCCGTCGTCAGCCGCGGGTTCTCGATGGCCCGGCACATGAGGAAGTTGAGGTCGGCGGTGTCGGTGAGATGCTTCTTGCTGTTCTTGGCATTGATGTAGGAATCATGGCACCTCTTGGCCAGCGCCCACAGCCCCTCCTCTCCGTGTATCTTGTGGGTGTTGGTGATGGCAGAGTAGAANAACCCAACGTTGTGATCGTCCAAAGCTGGCTCAAGAAACTGGCGGCAGTTGATCAGGGTCGCCACAGNNTATGTCTCTTGCTGGCCACTGTCCAGCTTCTTNNNTTGCCGTGCAGCTAGCAGCGT | |||||||||
gi|159741610|gb|EG380202.1|EG380202 BG01015A1D11.f1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TATTTATTTACAGAGGGAGTA EST sequence (targeted fragment marked with yellow): AGATCCATTATTGACACAACAATTCTTGACAAGCAGATTGTTCATTCAACTTTGTACAAATTATGGAACGACGGCTACATAGATACAGAGGTCTGTTTCCTAGTGTCATCAGAAAAAGTAGTATTTCTTGCTTGGAGGGCAGAGAGAATGACAATGATAACCCTCCTTGCTTTAAATGTTAGTTGTGCGATAACTTCACTGCTTTGATGGTCTACTACTTTACTATAGAAGGCAGGTGGCCCATATTAGCCTTATGAATGCATCATGAATTTGTGATATATTGCGTTACTTTCATCATAAATCTGCATACATTTATAAGCAATAATGCAGTTTAAAAAGGCTATTTGAGCATTTGGGACAAAGCTTGTAAACAAACTTGATAAGTTAGTTAATACTCCCTCCGTAAAGAAATATAAGAGCGTTTAGATCACTATTTCTTTAGAGGGAGTACAAGAGTAAGTGTCTAAAGTTTTCTTGACACATTAAGTACTTAAACACAAATAATATCCAGTTATATGTTCTAGAGGAATTCCTAGTTATGTGAATGGTGCTCGAACACCTTAACCCACACTTTGAGTTTTGTAGTGTGGCAATTGGTAATACCACAAAAGTTCAGAACTTCTTGCACCCATAAGTTTCACCAGCTCAAGAGCATATCTAGGTGCTTCATTAAACACTCATTCCTTAAAATAGTTGTAAGGAACTTCTGTAAATTTACAGAACAAAAACCAGTTTTAGGGAAGATCCTTCAAAAAAAAATAAGGACAAGGAATGGGATTAGGAGCGAGAGTGCTTATTCCTTATAGTT | |||||||||
gi|158966480|gb|EG395367.1|EG395367 BG01032B1E04.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TATTTATTTACAGAGGGAGTA EST sequence (targeted fragment marked with yellow): CGATTTTTTCTTTTTTTTTTTCACACGCACGCGGGGATGGCCATAGCAGATCATCAGATCAATATATCTTACACACTTGGTCTCAAATTTAACTGGATCATCAAATTTCTCCCTCCGTAAAGAAATATAAGAGCGTTTAGATCACTAATACAGAGGGAGTACATTCAACTGAAATTAGTTATACAAGGTGTTGCAACCACAAAAGCAGAACAAACAATAAACCTGGCAAATACTCCAACCGACTGGTATTAAACAAGGCGAGTCTCAATCTATCCTTGGTCGATGTTCAGCCCTTATTTCATCAGATTCCAAGAAGTGGATTTTGGCAAGTGACCCAATGCCCCGGGGCATTCGCTTCTTCACTGCACGCTGATCCTCATTTGTATACGGGAACTTTATCGGCAGATTCACGCCTGGGCACATGATACGTACCCATGCATCATGCAGGCACGCTTTCTGTAATTCATCAAAGCACTTCTCACATGCCAGTCTATCATACAGGTACACATCCTGTAGATTCACCGCTACTTTCAGGACACGCCTGACATGATTCACCATGTAGTCTTTAGCCTTAAAGCCGAAGAGGATGAACTTGGCCAGACAGCGGTGCTTGAAATTTGATGTAGGTGATTCCCACTCAACGCCCTTGTTCTCGCCAATCTCCTGATTCATTTCCATTTCACATTTATGATCCACTACCGTCATGTAGAGCTCCTCCAGGGACGGCGCCACTTC | |||||||||
gi|159600996|gb|EG403018.1|EG403018 BG01029B1H10.f1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TATTTATTTACAGAGGGAGTA EST sequence (targeted fragment marked with yellow): ATCTCATGGGAGAGGATCTTGAATCTTTGAATCTCAAGGAGTTGCAGCAACTGGAGCAGCAGCTGGAAAGCTCACTGAAACATATCAGATCCAGGAAGAACCAACTTATGCACGAATCCATTTCTGAGCTTCAGAAGAAGGAGAGGTCACTGCAGGAGGAGAATAAAGTTCTCCAGAAGGAACTCGTGGAGAAGCAGAAGGCCCAGGCGGCGCAGCAAGATCAAACACAGCCTCAAACCAGCTCTTCTTCTTCTTCCTTCATGATGAGGGATGCTGCCCCTGCCGCAAATACCAGCACTCACCCAGCGGCGGCAGGCGAGAGGGCAGAGGATGCGGCAGTGCAGCCTCAGGCCCCACCCCGGACGGGGCTTCCACCGTGGATGGTGAGCCACATCAACGGCTGAAGGGCTTCCAGCCCCTATAAGCGTACTATTCAGTACGAGTAACAAGTTGCACCGGCCAGCCTGGTGTATCTTGCGGTTGCGAGCACGCTGACCCCTTGTAGGGGAAAGGAAAAGAGATCAGAGTAAAGTAGCAAGCTTGCAGGAATGTGTATATTTCACTTTGTCCACCTCAGTTTCCGTCCCACCTGGGCTGAGATGGCTGTATGAGTAATTTACCATGTACTCCTCTGTAAAGAAATATAAGAGCGTTTAGATCACTACTTAGTAATTTATATGTAGCATGAGTGACGAATTTTCAAGTTTCCATGATACCCGGCCCTCCTGGGTGTTGTTTCTGTGAATTAACCTATC | |||||||||
gi|159627462|gb|EG397070.1|EG397070 BG01032B2F08.f1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TATTTATTTACAGAGGGAGTA EST sequence (targeted fragment marked with yellow): CGAGAGAACGCACCGCCAGCAGCACGCCGGCTCCGCCAAAGGCCTCGCCGGGATGAGGGAGAGCCACCAGCACCTTTATTCCACACGGACACTGCCACCCCCATCTCGACGGCATGACCGGGAACCACTACCCTACTAACTACAAGCCGGAAGCACAGGAACGGGGTTCCCGCCCTCTCCCATCGCCGGAGCGGCAGACGGAGAGCGAAGGAACCACCGTCCTGGCCGGCGGCAGATCGAGGGGACGAAGTCGCCTTCCTGTTCGCTTCCCTCAACACTGTAGAGAGGGGAAAGGGGGCTGCTGGCGTTCTGGTAATAGGTAATCCCGAATTCATAGTACATGTTTTTCTAGCCCTTTACTATGAGATACCAGGTAGTTATTCGCAAAGAAAAAGAGATACCAAGTAATTGCCCTGCAGAGTTCATGGCAAATGTTGCGTAGAAAAAGGAGTTGAGGCCAAATGTTTGTCATCAATCAGGCTGGGAAGCTACCAAACAGATTGTTCTACTTGTCTATTCCACCGAATATATTCGTGGACGTGGTAAGATCTGCCAGCCGCACCGCTTCATTGCCGAGTGGGAGTGGCTGGACGAGGTTTATAGTGGAGAAGCCATTCGGTCGCGATTACGAGTCCTCGGCGGAGCTTACCCGATCCCTGAAAATGTATTTAGAGGAGGAGCNNATCTTCAGGTATACTCCCTCCGTAAAGAAATATAAGATCGTTTAGATCACTATCTAAACGCTCTTATATTTCTTTACAGAGGGAGTACTATATAT | |||||||||
gi|159687698|gb|EG384888.1|EG384888 BG01018B2B12.f1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TATTTATTTACAGAGGGAGTA EST sequence (targeted fragment marked with yellow): CCGTGCTNNNACCAAATCCCCCAAATTCGAACCCACCGATGGCGACCAGGTGCGCCGCCGCGGCCGATCTGCCCGCTGGCCGCCCCCGCAAGCGGGCCCGGCACGGCTGGGACGTCGCCCCAGCGACCAAGGCTCAGATAACATTTTGTGGGCAAGAAGTTGGCGATATGACCACCCTGGTATTGCCGTCACATCCTCCGGACTATACTTGCTTCTCTCTGCTCTCAAAGGGTGTTGCTCGAAATGCTTCCCCTCCTCGGAGAGAAGACGATAAAGATGGCCATTATGTATTTGCTGTTGGAGAGAATTTGACCTCTCGCTATAAAATATACAGAAAGATGGGTGAAGGTACTTTTGGTCAGGTACTGGAATGTTGGGACAGAGAAAGAAAAGAAATGGTAGCTATTAAAATTGTTCGTGCTGTAAATAAATACAGTGACGCAGCAATGATAGAGATTGATGTGCTGCAGAAGCTCGCAAGAAACGACGCCACAGGAAAACACTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATTGTATGCGAGAAGCTTGGCCCAAGCTTGTATGACTTTCTGCGGAAAACTGCCTACCGCCCATTTCCAATCGACCTAGTTCGCGAGCTTGGAGAGCAACTTTTGGAATCTGTCGCATTTATGCATGGCCTGAAGTTAATTCATACTGATCTAAAACCAGAGAACATTCTCCTTGTTTCTTCAGAGGATGCTAAGTTAGCTGAAAACAAGGATGGATCATTCTCAAAGAAGGTGCCAAAATCAAGTGCCATCAAGTTAATCGACTTTGGTAGCACAGCATATGATCACCAAGACTGTAGCTACATTGTCTCTACTAGGCACTATCGTGC | |||||||||
gi|159783492|gb|EG399628.1|EG399628 BG01038A1B12.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TATTTATTTACAGAGGGAGTA EST sequence (targeted fragment marked with yellow): CGATTTTTCCTTTTTTTTTTTGAATTGTGATCCCATGCTTTATTAATGGCACATCTTAGATATATATGGAACATACTAGCTCTGTAAACAAATATAACAAGTTTTAGGTCACTACTTTAATGACCTAAAACGTCCTATATTTATTTACAGAGGGAGTACACAACTATCTCAGCGATGGTAACACACCCATGAGAGTTGTGTAACAAATAGTGCAACAATACATTCAAAGATAGTTGTTATTTAGCTGGTTGGATGTAACTCAATTCTCACGCCAGATACTTGAGCACGCCAGGAAAGTGAACCATGTAGAAATAGTCGTCCCAGTCGATTTTCTTGGGATCGAAATCAAAGTAGTATTCTCCTCCATCACTATTTTGCTCCATCGCCTTCCTTAGCTTCTCAAGGTTCATGTCATCAAAGCGCCCTTTGAATAAGGTGTAAGGTGCATAGAGCTCGATCAGATGCATGGCCAGTCTGTATTTTCCGCTGAGCTCATTGTAGCGCCGCGAGAAAACACCACATAGCACTACGTTCACCAGATGAAGGATCTCAAGAGGGAGCTTGTACTTGATGATCATGTAAGTGCGGAGCTTGGCAACCGTGCTGAAGAAGCGCATCTTGTTCAGCCGGATGGGCTTGCCGTTCTCCCCTCGCGGCGGATTGTCCACGAAGTAGCGGTGGGCCGACTCCCGGAGAGTCATGTAGGACGCCGGGTTGCTCATGGACGACGTCACGTGGTNNNTGGTCTGCGTTTGTTCC | |||||||||
gi|159670220|gb|EG387101.1|EG387101 BG01021B1E10.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TATTTATTTACAGAGGGAGTA EST sequence (targeted fragment marked with yellow): GCATTTTTTTTTTTTTTTTTTGTCGACCAAGTGACTGATAGAACCAACAGAGGTACAACATAAAAGATCAAACTACTTCAGGTTCCCTCTTTTACAGCATCTGTTGTACGTCTGTGTACACCACTTGCACAACTCCCTATGCAAAAGAGCTTCACTGTGCATACCATATACTCCCTCTGTAAACAAATACGGAGTATAAGACATTTTAGATCACTAAAGTAATGATCTAAAACATCTTATATTTGTTTACAGAGGGAGTATTTGACAGCAGATGCCATGTTTACTCACCATCACTGAACGCCGAGATGGTGTTCAAACAGACATAATATTGACCACACCTTAAGGGTGTGCAGTTATTGTGGATTTTCTAACATGGCTACTCAGCCATGACAAACTTAAGGAACGGATGAACAATATGTAATGCTCAGATCAGATGGCATCCTTGTAGACAAGAGGCTTGTTGACCCATCTGATGCGGCAGCCGCAGGCTTGCAGCAGCTGGAGCAGATCAGGGGACAGCACGGACTTCAAACCACTGAGTATCTTTAGCTTCTTCAGCCTCCCGCAAGCGGCTCTCAGNNCCATCTCGAACCCTTCTATGGAAACCCATGAGAGGTGCACCATCTTCACGTCCTGGAGGCACCTCAGGGAGCTAAGCAGGTGGCACAAGCCTAAGCCAGTAACTTGGCAGTACGATATAGTAAGCTGTC | |||||||||