| mature miRNA: TATTTCTTTACAGAGGGAGTA species: Pseudoroegneria spicata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|207520218|gb|FF344798.1|FF344798 BG02010B2B06.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B TATTTCTTTACAGAGGGAGTA EST sequence (targeted fragment marked with yellow): GCATTTNNNTTTTTTTTTTTTGAAGACATGAGCCATGCATGAAATCTTATCGTGGAGAGCATTTCAGTACACGTAGATGGTTTCATCCTGATAGGAACTAGGCTCCATGTTCCTATGTAGATAAGCTTGTAATGTGGACAGATATCACCACGCATCGTGACTACAGTAAAACGTACTACTCCCTCTGTAAAGAAATATAAGTGTTTAGATCACTACTTTAGTGATCTAAACGCTTTTATATTTTTTTACAGAGGGAGTATCAACTATACTTCATCTATCCTTGTCTACGTACAGTACTGTCAATCACTGGTCTTCGGCAAGTACAGAAGAGGAATTTGGGGGGGGGGGGGG | |||||||||
gi|207382015|gb|FF349043.1|FF349043 BG02013B1A07.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B TATTTCTTTACAGAGGGAGTA EST sequence (targeted fragment marked with yellow): GTACCTGCACGAGCACTGCAATCCCAAGATCATACACCGTGATGTCAAGGCTGCGAACGTGCTGCTTGACGAAGGTTTTGAACCAGTTGTCGGCGACTTTGGCCTGGCAAAGTTGGTGGACGTACAGAAGACGTCCGTGACCACGCAGGTCCGCGGCACCATGGGCCACATCGCACCCGAATATCTGTCCACGGGGAAGTCGTCCGAGAGAACCGATGTTTTCGGCTACGGCATAATGCTTCTTGAAGTGGTCACTGGACAGCGCGCCATCGACTTTTCGCGCTTGGAGGAAGAAGACGACGTGCTGTTGCTTGATCATGTGAAGAAGCTGCAGAGGGAAGGGAAGCTGGAGGGCATCGTGGACCGGAACCTGAAGGGGAGCTTCGAGGGGTCGGAGGTGGAGATGATGATGCAGATCGCGCTGCTGTGCACGCAGGGGTCGGCGGAGGAGCGGCCGTCGATGTCGGAGGTGGTGCGGATGCTGGAGGGGGAGGGGCTGGCGGAGCGGTGGGAGGAGTGGCAGCAGGTGGAGGTGACGCGGCGGGAGGACTACGAGCGGATGCAGCAGCGGTTCGACTGGGGCGAGGACTCCGTCTACAACCAGGACGCCGTCGAGCTGTCCGCCGGCAGATAGCATGGCGCCGTCCTTTGCTCTGGCCCCGTTTACATACAACTCCTCCCTCTGTAAAGTAATATAGTAATAAAATCGTTTAGATCACTACTTCCATATACAAGAATTACAACCCGCTCACGAGCCTGACTGCCCACANNNGCCACCGCACACACCACCAAGGAGAGGATGCTGCGGTGCAGCCAGCCAAACCACCCTTTTCACTAGCCACCGTTGCATAACTTTTGTGACACTTTTGACTTGTTCGCATAATGTAACGCATGCATGATGACAAAAA | |||||||||
gi|207470034|gb|FF350305.1|FF350305 BG02022A1H11.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B TATTTCTTTACAGAGGGAGTA EST sequence (targeted fragment marked with yellow): GCATTTTTTTTTTTTTTTTTTCTAGATACTCCCTCTGTAAAGAAATATAAGAGTGACATTGATCACTGGATCTTCAATTCTTTAAGTAGCAGTCAATATGAACATCAAAATCAATATCCAAACTGGAGCTTATTAAATTTACTCTAACAAATTAATATTTTGCAATACAATGTACCATATCAGGCCGAAGAAGAAAACAATTGCAACAAATGAGTGTACAACAACAGCAGAAGAAGAAGAACTAGTATATCTTCTACGGTCATTTGTATTCTTGGAAATTGACATGGCCGGTGGCTTGCGCGTGTTCCACAGCTTCCTTTTGACCAATGACACCAATTTGGCACACGCCGCAGCGCAATGTAAAGTTTGCGGTGTCTGTGTAGCTCCTCTTCCTATGTGCCTCCTTCGCTAAGTTAAGAGCAAGGCCTTCTACTGGACCAATGGAACGGTTCTGGTCAACAACGTAGATGGTCTGATCAAATTCTTCTGGTGCCCCTTCAGCTGGAGACATTGCTAAAGCATCGTAATGCAACCCATCATAAATGAGCATTGCCCTCTCGTTGTAGTTCTTCCCCTGACCATACAGATCACATCGTGTTGTCTGGATGTCATATGCAGCAATTTCACGCCCATAATATTCTGACAGAATTGAAAGTTCTATGGCACCTCCCCACTTCTCAGGGTCCAAAATCCAAGCACAATACGCTTCATTTGGTTTCCCAAGAAATGCTTCGTTGTACTTTTCAGGATCACTTGCAACTGCTGCTGCTATGACCTGTC | |||||||||
gi|207416423|gb|FF361986.1|FF361986 BG02033B2H03.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B TATTTCTTTACAGAGGGAGTA EST sequence (targeted fragment marked with yellow): ACCGATTTTTTCTTTTTTTTTTTAAAACCCATCTCTTAATTTTACAGCTCATGCTAGGTACACACATAACTTAGATAGTAAGGCACGGAAGCATGCCTTGATATTTTACATGATTATTGCAACACATATATAAACTCCTTAAAACATGGCTTTATACCGGTCGCTGCAAACCTCAGAAGCTAGGAGTTCAAGCCACCTGATGGCAAACTTAAAACTTGCTACTGCGATGAAGCTAACACGCACGTACTACCTTCGTAAATAAATATAAGACGTTTTATATCACTACTGTCTAGGTGACGTCCTTGTCCTCCTTGAGATGGCGCGTCTTCTCCCCCTTCACCTGCGAGGCGTCATGGTCAGGAGGAGGATGGCTCGGATGCGCCTCGGCAGTTCGACGGCTGAACGCCGGCCGGTCGTCGTCCCTCGCGTACACCCCGCCGAAGCCTTCCTCGTCCGACCTCGTGGAGTAGGCCACCCCGAACGGGTGGCTCGTCACGTCCTCTTCGGTGTTGTGCATGTCGTCGCGCGGTGGCTCCATGGCCGGCGCGGCGGAGACGCTCCTCCCTCCAC | |||||||||
gi|207402791|gb|FF356728.1|FF356728 BG02024A1F03.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B TATTTCTTTACAGAGGGAGTA EST sequence (targeted fragment marked with yellow): CGATTTTTTTTTTTTTTTTTTGTAAAATCGTACACTAGGGCACAGTAGTACTCCCTCTGTAAAGAAATATAAGAGCGTTTATATCACTATATGAAGGGAGTATCTCCCTCACAATCGACAGGGAAAAAAAACATGTATACTAGGTGAAAAAAAACTAGTACTAACAATCATGTACGAGACTTGCGGATTTTCTCAAGTGCTTAGGGTCAAACGTCGAGGCCAACTACTCAAGCACATTGGCTCCTCAGCTTCACATTTCAAATCTTTAATCACAGGGGGGTGATCAGTTGACCTGACCTAGTGCTTCCTTCTACTTGGTGGCGGATCCCATGCCGCAGAGGGCGGCGGCGGCCTGGCGGGCGAAGTAGGTGAGGATGACGTCGGCGCCGGCTCGCCGCAGGCACATGAGCGACTCCATCATCACCTTCTCCTCGTCGATCATGTTCAGCGCCCCGCCGGCCTTGATCATCGAGTACTCGCCAGATACCTGGTATGCAGCAATTGGCAGTGCAGAATTATCCCGGAGAAGTCGGATGATATCCAAGTATGGCAATCCAGGTTTCACTAGAAGGATATCAGCTCCTTCGGCCTCATCTGCTGCAGTTTCTAGAAGGGCTTCCCTGTAGTTAGCTGGGTTCATCTGATAGGTTTTCTTGTCCCCAAATCGTGGATTTGAATCTAAAGCTTCTCGGAATGGCCCATAAAATGAACTGGCGTACTTTGCAGTATAGGACATGATGGAGACATCATTGAAACCCTCAGCATCCAAAGCAGAACGGATTGCTCCAACACGACCATCCATCATGTCA | |||||||||
gi|207404806|gb|FF360710.1|FF360710 BG02035A1B03.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B TATTTCTTTACAGAGGGAGTA EST sequence (targeted fragment marked with yellow): GCATTTTNNNTTTTTTTTTTTGGATGAAAAGATTACTAGATAAAGTCTTTGCAACAGCAAATCATCAATTCTATTCCAATGGAAGACACATGGCGTTGAGCCATTGCAGCAAACTGGCAATTCTATCCGAATTACACACCAGAGAGATCACACATTCACACTCAGAGCTTTCAGATATAGTAGGTACATAACATGCATAACAGAGCTTTCGATCCTGAAGATGCATGAAATTCACCCTACCTAGCCAAGTCCTCCCTCCTCCAACTACAGAAATATACTCCCTTTGTAAAGAAATATAAGAGCGTTTAGATCACTACAGAGGGAGTATAACTGTAGTAGCATGGTCGGAATTCTTCATCAGACAAAACATCGAGAAATGTAGCTTCTTGGTTCATCTGAAAGAAGGAAACTCTCCTCCAGGAAGCTCCCAGTTGTCACACCCATCATCGTCTGTGGTTCCCTCCTTCGGCTCCTGCTCATCGTCAAATGGATATGGACCCTTGAAACGCCTCCGGCGGAGCCTCCATGCGGCGTCGCGGGACTTTCGCTTGCGCTTGTCCCGCGCGTCCTCGTGCCACCGCCGTCGCCTGACCTCGTGCATGACACCGGCGCGCGCCACCTCCCGCGTGAACTGCCGCAGCAGATCGCCCCCGTCCACGTCCTCGTCTCCCGCATCCACCTTCGCGTTGTGGTACTTGGGGTTGGCCGCCGGCGCCCACGGCGAGGTGGGGGC | |||||||||
gi|207385990|gb|FF363073.1|FF363073 BG02037B2E06.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B TATTTCTTTACAGAGGGAGTA EST sequence (targeted fragment marked with yellow): AAATTNNTTATGTATATATTGATGCCTCTTTGTAGCATGTATTGTNNNCTCGCTGTATTCTCACTTCCATTGTATCTTGTTGGTACTGGTAGTTCATCTACATGAAATGCCTTTTTTTCTAGGTTTTAACATGTTTTATATATCAACCCCTTGATAATATTAAAGTAATTTAAATTAGCCGTTGACAATATTTTAGCTTTATCTGCTCTTGTGTATTTACCGCTGTACATACCCTATTCCATGCTAGGGCCTTGACACACTGATACTCCTTACGTAAAGAAACATAAGATTGTTTAGATCTAAACAATCTTGTATTTCTTTACAGAGGGAGTAGTAATTTTTTAACACTTAACTCTGTAGATAATTAAAATTCTTGGCATTTTTGTACTTGATGAAAAACTGAATGGTTAGATGTGGGAAACTGCATTTTGTGAGAAAAAGAGTTACAGACTTGTAGATAGGAAACATATATGTTTTGAGTACTTATTTTGCACATCTGAAATGGCAATGCTTACCATACAGTAAACAAAGGTCTAAATAAAACATTAACCTGATGACCACCAAAGTTGGTGAACTTACACTTGCAAGTTTTGTGGTAATTTTCCGTACCTTGTCACACATGATAATATAGGGTTTAATTCTTTGGGTTTTCTCAAATGATCAGGCACAGTGACGTACATTTTCAAGTTACGTGGACTATTGTTAGAATAGCTCTGCATTAGATTTACACTTCATTATCTCGTGTTCATGCTTTTGTCAATGTATGTCTTACTAATGCTA | |||||||||
gi|207477131|gb|FF345176.1|FF345176 BG02008B1F07.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B TATTTCTTTACAGAGGGAGTA EST sequence (targeted fragment marked with yellow): ACGCATTTTTTTTTTTTTTTTTTAGTATTCAAGAAGATTTTACTGTGTGTTAAAACCCAACAGAAACTTAGCCAATACAAAGTTTAAATTGTACTCTCTCTGTAAACAAATATAAGAGCGTTTACGGAGGGAGTAGTAACTATCGTGTTAAGAAGCTAAGGAGACAGTTGATTCAGCTGGTGTCACTTGGGTCATCGCTTTATCTTGCTGGCCAATGCTTCAATATGACTCCCTGAGTTTGGGCTTCTTCTCCATCCTTATCGGGGAAAATGCAAGCTTGTCAAGCAAAGAAGGGAATGCGGCTGCTCCGTCCCGTTAAATTTGGAGATACTGCGCACAAAAAAAAATCATCTATGTGAGATGTGGTGTCTAGCAAAGGACATTAATTATATATGGGAAAATTAACAGATCAGTTTGCCTCGTACCAACATTAGCATTCTAGGTAGGTACTTGACAATCATTGCAAATAGACACAAATGTTCAGCACTAGTGGCTGGGGCGCCACCTGGTGGCGCCTCTTGAGGCAGAATTGCGCGCACTAATCAAGCTGGCGTATTAGTTAACGTCTATGTATGACAGGATTCTTACTTCAGCGAGAAGACAAGCAGTCGAAAAGAGTGATAGCTTCATGTTGGTTGTTAAAAATACAAGACATGCAATCGAAAAAAGCAAGAGTGTGCATTGATAAAGCAGNNCAAGCGTAGCAGTAGT | |||||||||