| mature miRNA: TATTTCTTTACGGAGGGAGAA species: Triticum aestivum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|143801949|gb|CJ967870.1|CJ967870 CJ967870 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul8o18 TATTTCTTTACGGAGGGAGAA EST sequence (targeted fragment marked with yellow): CTGTGATCAAGGTGGAACGTCGTCCTTGAGTACCTGGCTTCAGTATTCAATACAAGTCATGTGCTTATTGTAGTGATCAGTACTCCCTCCGTAAAGAAATATAAGAGCGTTTAAATTACTTCTTTAGTGATCTAAACACTCTTATATTTCTTTACAGAGGGAATACTTATTTGTACTCCATTGTGACCATGAAGCCATGTCGTTCCGAGATACTTGTAGTTTCCTGATTTGGATCCAA | |||||||||
gi|239861636|gb|GR303850.1|GR303850 WRIS_3121 cDNA library of a compatible interaction between stripe rust (Puccinia striiformis TATTTCTTTACGGAGGGAGAA EST sequence (targeted fragment marked with yellow): GGTGGTTAAGGAGGTAGCTGTTAGATCTGCAGTTTCTCTATTGCCTCGTATCATCCTTTTTCATGGGACAGCCGACTGTTCAATGCCCTCTGCAGAAAGTGAAGCATTCCTTGATGCTTTACAACAGCGTGGTGCTAGAGCGGATCTATTCTTATATGAAGGAAAGACACATACTGATTTATTTCTTCAGGATCCTCTTCGGGGTGGTAGGGATAAGATGCTGGAAGAGATTGTGGCCGTGATACAGAATGACGACCCAGGGCTGTCCGCGCAGCACCTTGCCGTGCCCGTCGCACGCCGTCTTGTTCCTGAATTCATGCTGAGGCTTGCTGGGAGAGTGAGCCCTTTCTGAACATGGTGGTGATTACTAGACACGATGACTAGCGAGGCAATTTACTGTAAGAACCACAGGAGTACTAGTTAGCTACAGAATTCATTTGGTGGCCCGATGTACTGTTAATTAACCAGAGATGTATCTCGCTGTTCTATATGAGTTGTGTAAAGGCAGACCTTGCTGTAGATGACTGCCACTGCTGTATACTTGTATTGGATCTCAGTGTATAGTATGGCTCATTATTTCTTAGCTCTTGAGCCTCGCACTGTATCTTGTGTAATTGGAACAAAGGCCAGCCTCTGGTTGATATCGGCCGTGAAACCTACTCCCTCTGTAATGAAATACTTGTTGTTGGGAC | |||||||||
gi|143801907|gb|CJ967828.1|CJ967828 CJ967828 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul8m13 TATTTCTTTACGGAGGGAGAA EST sequence (targeted fragment marked with yellow): GCAGGATTAGCTGCCGGAGTCTGGACGNAAGGAGGAGATATTCGCAGGCCTGCACAAGGAGAACACAACGGTTTTCCGCCCCAAGTTAGATGACGCACACAGGAAGAAGAGAGGAGAGTCCTGGAACAAGGCGGTTTCAAGATCATTTGACCTGGCTGACCTTTCTCTCTAGTTTGTTACACCTTGTTGCGCGGCAAAATTGGATCAGTGTGTGCCAGCCCATGTTTGTCGACGAATAAATGGTATGTTGTACATTATTTCGGTGGGATTTTTCTTTGGCTTTATATAGGAAGAATTGGAGCATAAATGTCCTTGTATATCTATAAGTACAGGAGCATCTGGATTCTTCAGAGAGAAGTGCTTGTGGAGTAACAAAATTCAGTTTCATGATACTTCCTCTGTTTTAAAATATACTCTCTTCGTAAAGAAATATAAGAGTGTTTAGATCGCTATATTTCTTTACGGAGGAAGTATTTGCAGATCTAGGTTTGTCCTAAGTTTGTAGAAATATGCAGCTTTGTAATTAGGCTTTCGTAGGCCAGCAGAAGCCGTGCATCCTGAGTTGCCCACAGCACAAGTACACGTCCCTACCTAGTTCCCTACTTCGTGACGGCAGAGGCTGCAACACCATACCATGCCAAGTTCTACTGCATGCTTTATGAAAAAAACAAAAAGAAACTCTAGTGCATTATCGAACTCCTTCAGCAAAATATGGCAAAGTATTTGTAAATCTAGT | |||||||||
gi|143796294|gb|CJ962219.1|CJ962219 CJ962219 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul29b1 TATTTCTTTACGGAGGGAGAA EST sequence (targeted fragment marked with yellow): GCGCCTACAGCCAAGTACGTTGAGAGATGCAAGTTTCCCCAAGACGGCTCATCGCCAAAATCCCTGAGATACATTGGAAGTATGGTTGCTGATGTTCACCGCACCCTGCTCTACGGAGGCATATTTCTGTACCCCGCGGACAAGAAGAGCCCCAACGGAAAACTCCGTGTTCTGTACGAGGTTTTCCCCATGTCGTTCCTCATGGAGCAAGCCGGAGGCCAGTCTTTCACCGGCAAACAGCGGGCCCTTGAAATCGTTCCTTATGAGATACACCAGAGGTCTCCGATATTCCTCGGGAGCTACGATGATGTGGAGGAGATTAAATCGCTGTACGCTTCGGAGTCGAGCACCGCCTGATCCGAGTACCTGAAGACACATACACATGTTCTGCATCGCGTTGCTGAAAGAACAAAGTTAAACTCCTCAGGTAGTGTTATGGTGATTCTGAGATCATTGTCATGGCCTCGACGTAACAATATCCGTGTATACATATATTTGACATATTGCACGCCATTTTAACAAGTATTCCCTCTGTAAAGAAATATAAGATCACGGACCACACCCCCTTACTTTTCATCGTTATCAGTAATAAGAGTTCACTGGTCT | |||||||||
gi|149118156|gb|ES697589.1|ES697589 CG2007_042 cDNA-AFLP of wheat response to Diuraphis noxia in pTZ57R/T Triticum aestivum cDNA TATTTCTTTACGGAGGGAGAA EST sequence (targeted fragment marked with yellow): AAGTACTGCAGCGAAGTTTCTGCCAAGATGCTACTAACAAAAATGGAAACAAAGGGCATTAGCTGTGATCAAGGTGGAACGTCGTCCTTGAGTACCTGGCTTCAGTATTCAATACAAGTCATGTGCTTATTGTAGTGATCAGTACTCCCTCCGTAAAGAAATATAAGAGCGT | |||||||||
gi|143796742|gb|CJ962665.1|CJ962665 CJ962665 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul2j05 TATTTCTTTACGGAGGGAGAA EST sequence (targeted fragment marked with yellow): AGCTTAAACCTGGACCAGNTCATCGCCGCGTTCGCCAAGAAGCAGCTGAGNCCGCGGGACCTCACGGCGCTCTCCGGCACCCACACCATCGGCTTCTCGCAGTGCCTCAACTTCCGCGACCACATCTACAACGGCACTAACATCGACCCGGCGTTCGCCGCGCTGCGCAAGGGCGCCTGCCCCGCCCAGGCTCCTAACGGCGACACCAACCTCGCGCCATTAGACGTGCAGACGCCGCTCCTCTTCGACAACGCCTACTATCGCAACCTGGTGGCCAAGCGCGGCCTGCTCAACTCCGACCAGGTGCTCTTCAACGGCGGCTCTCAGGATGCGCTGGTGCGCCAGTACGCCGCCAACCCGGCGTTGTTTGCCTCCGACTTGGTGACGGCCATGATCAAGATGGCGAGCCTCACCCCGCCCAGCGGAACCCCCTCCCAGATCAGGCGTAACTGCAGGGTCGTCAACAGCTGACGCAACATGCATCTTCGCATCGTATCTACGTGTTACAGTGTTAAGTAGTATACATGCACAACATGTAAATACGCATGCATGCATGGCAGAATAAGAGCCGTTTGGTTTCACAAAGTAATTTGTATTATTTCCTTTGTAAAGAAATATAAAAGCGTTTAGATCACTAGAAGGAGTATATACCTGGGGCGGGCACAGGTCCAGAGGTGAGTAACCGGACCCTCCACCTTCAAGATTGTAAAATACCTCCTTCATC | |||||||||
gi|282836255|gb|FL488867.1|FL488867 CWFTAALSCS-93B1-T7_N13_G07 Wheat anther full-length cDNA library Triticum aestivum cDNA clon TATTTCTTTACGGAGGGAGAA EST sequence (targeted fragment marked with yellow): ACATAGTCTGGTAAGACTTTACTTATCAAACTTGGAAATAGCAAGCATATTCATACACATTAAAATTACTCTCTCTGTAAAGAAATATAATGTTCAGTATACGTAAATCTTGCTACTCTCAGAAATACCTAAGTAGATTCTTGGCTTTATCAACAACTATGCGCAAGGAGCTCTACACCAGAAATCCAGAACTACTTCCAGGTCTTGTACTCTCAAGGGCAGTGATGGCATTCGAAACTTCATGAACTATAGTGTAAAGTTTCTTACACAGTTCACCATGTAGCTGCACAAATAATCAAATAACAATCCAAATGAATAAACAATGCTGATATGCCATATTATTGAATATAAGCAAAGTACTTCGAACAAGAGTCATAGGCGGGGGACCCGACCCCGCGCCGCTCAGCTCGAGCGACCCGGGGGGCACCACGCGCGTCGCTGGCAGATCCCTCCCGTGCGTTTCCTCTCTTCCGCCGCTGCCACAGGCCTCGCCACGGTGGACGCGCAAGTGTCTGTGCACCTGTGGTCATCGTCGCCGTGGCGATTGGTGCGGTGCTTGCTCGCCGGCGCTTGGTTGCGGAGCTCGTGGGCGCTCCCTTTGGCGTCTGATCTGGCTAGCGCGCC | |||||||||
gi|282836260|gb|FL488872.1|FL488872 CWFTASYZ1-22-A2-T7_I10_E05 Wheat shoot full-length cDNA library Triticum aestivum cDNA clone TATTTCTTTACGGAGGGAGAA EST sequence (targeted fragment marked with yellow): CTTGGAAAACCTTGATTCATCTTTGCCGACAGGCTACTTGGCAACAGAACCGGTTAAACCGCGGCATTGGATATCACAGGACATGAACAATGTTCAGACCTGTTGTTTCCCAACTCGATTGTGAACATTTTAAACAAAGTGGTTTGCAAGAATTACAGTGTTACAGAAGTAAAATACTCCCTCTGTAAAGAAATATAAGATCGTTTAGATCATCTACTTTACAGAGGGAGTAGAATCAAAGCCCTACTAATCAAACACCCCCAGAACAACTTAATGCAATCTGAATCCACAAATGTCAGATCTAAAAGAATTATCAGTAATCAGGTCACGTGCTTTGCAAAACTTTAGGCCATAAATAGATTGGTCAGCTGCATCCTTGGAGAGCCTGACTGCTGTAGCTTTGGCGAACAAGCTTGCTCTGGCAAAACTCGTCGGCGCTAGCACTGCTGCTATAGCTCAAATCTTTAGATCCTTTGACACTGACACAATGAACCTGAACCGGCAGTCTCTCTGGTGACACAGGTGCATGTTTCTCCAGCTGCAAGCAGTAGCTCCCGAATGTCTCTAGGTTCACTTTAAGCCTGAAGTCCAGATTAAACAACAAATCCAGCTCGAGACGATTCATCTCAATTGTGCTGATTCCTCCCACCCTAGCATAGAATGCATTGTTGAAAAACGCATCATCTGTGAATTTGGCAGCAACCACCACACTTGTAATCAGCAAGCGATGAACACTGAAGGGCGTCATGTACACATTTGGCTGCTGTAGATATCTCTCCATGTAGACAAGTGCCAACACAAAGCAGGATGGACTGCACTCGGCATATTTGAAAATGCGCTCTGCATAGAGCTGTATACTGAGATCTGGCACCTTCTGGCCATG | |||||||||
gi|222362048|gb|GH721776.1|GH721776 AZO2.108F20R010329 AZO2 Triticum aestivum cDNA clone AZO2108F20, mRNA sequence TATTTCTTTACGGAGGGAGAA EST sequence (targeted fragment marked with yellow): AATAGCAAATGAAAAAGAAACCAATATTTTTTTATTTCAGTTGAGTGACACATATTTATCCGAAAATAAGCTGAGTGATACATACTCCCTCTGTAAAGAAATATAAGAGAGTTGGGTTGTCTTGTTTGATGTCTTGGTTGGCTACCTGGCTTCCTGTCATGTTTGTCCTTTCATTTATCTTCCTTCGGTTCCTCTTTCTCCTTGGCTTTCTTTGCTTCTGCCTCCTCTTCCTCCTTCGCCTTTGCCACTGCTGCAGTCGTGACCGCGTCTTTCTTGGCTTGTTTGAGCGCCGCGATGAGGCCTGCCAAGCACATGTTCGGGTCCTTCTTTTTCTTCTTTGACATGGGCATCAGGTTCTCTGCCACGTCGGCCGGTGACATGTCGGTCTCTTCGAGCAGCTGCCGGATCTCGCCAAACAACACATGCTCGACGATATCTAGGTAGTTCTTGGCGAGCACCTTGAAGCCCTCAAAGCGGCAGTAGGACATCTCGATGTGTTTGTCCATCCTACCCCGCCGAATTAGCGCCGGGTCCAGCTTCTCCTTATGGTTGGTGGTGAAGATGAAGATCCGCTCACCGCCGCTTGCTGACCATAGCCCGTCGATGAAGTTGAGTAGGCCTGAGAGCGTCACCTTGCTTTCATCGTCCTTCCGCGGCTCCGTCGGGTCGGGTTCATATTCATTGTCAGAGTCCTTGTTACTAGAGGCCTCTTGTCCTTGCGGCGCTTCCAGTGAGGTCGAT | |||||||||
gi|282836258|gb|FL488870.1|FL488870 CWFTALYZ1-14-B2-T7_D16_B08 Wheat seedling full-length cDNA library Triticum aestivum cDNA cl TATTTCTTTACGGAGGGAGAA EST sequence (targeted fragment marked with yellow): GTTTTTTTTTTTTTTTTAAGTGTCTTAATTTTAGTATAATTTTGAATTGAATCTAGAATAAAGTTGAGGACATTTATTTTGAGACGGAGAGAGTAATAGTGAGGGCAAAGTTGCTTTCCGTGTCCGAAGCAGCCGCGTAACTGGATATACTACTAACTGGCTACAATGACTGCGAAAAATACAACTGGACATCGGTCTATACCAGAAATCTACTCCCTCGGTAAAGAAATGTAAGAGCGTTTAGATCACTAAAATAGTGTTCTAAACACTCTTATATTTGTTTCCAGAGGGAATACTAGTCTAGGATCCAGCAGCAGCACGGTGCAAACTGAAGACTTGGTAGAGCTGTACATCATCATTCACATACAAGCCTATCGTTGCCTCTCACTGCTGCTGGGACTCTGGAATCCGGCGTACCCATCTGAATTTTCCAGTAGTACCAAAAACATTCAGAAGCGCGGCAGCAGCAGCAGCACCACCAGGTGGGTGCATTCTTCAGAGGAACGCCGCAGCTCGGCGACCACCGGCAAGCAGCTGTACAACGGAGCGGCAGATATATGTCCATGTTCAGCTGAGCACGTCCACCGGCCAGAATCTCCGCCACGTTGAGATCTCGTCTTTGGTCTGGAGCTTCCTGATGCCGCCGTAGAAGCCGTCCGTCTCGTCCCCTTTCTCCCGGTGGTCTTTCCTGCTCACCGTCGTCTGCCTCCACCTCGACCCGGCCGCGTAGTGCTTGAACTCCAGCATGATCGTATCATCTTCATGGCAGCGGC | |||||||||
gi|143802193|gb|CJ968114.1|CJ968114 CJ968114 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul9m13 TATTTCTTTACGGAGGGAGAA EST sequence (targeted fragment marked with yellow): GAATAAATGGTATGTTGTACATTANTTCGGTGGGATTTTTNTTTGGCTTTATATAGGAAGAATTGGAGCATAAATGTCCTNGTATATCTATAAGTACAGGAGCATCTGGATTCTTCAGAGAGAAGTGCTTGTGGAGTAACAAAATTCAGTTTCATGATACTTCGTNTGTTTTAAAATATACTCTCTTCGTAAAGAAATATAAGAGTGNTTAGATCGCTATATTTCTTTACGGAGGAAGTATTTGCAGATCTAGGTTTGTCCTAAGTNNGTAGAAATATGCAGCTTTGTAATTAGGNTTTNGTAGGCCAGCAGAAGCCGTGCATCCTGAGTTGCCCACAGCACAAGTACANTTCCNTTTCTTAGTTTT | |||||||||
gi|222365128|gb|GH725445.1|GH725445 G118.110B23F010720 G118 Triticum aestivum cDNA clone G118110B23, mRNA sequence TATTTCTTTACGGAGGGAGAA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCCCACGCGTCCGCTTCAAAAACCTTCATGGGAAAAGGCTGCGCAAATAATAAGGGAGAGATATGACCCTGAAATGGATGGCAGAATTCTTCTCGGGAAAGTTGACTGCACTGAGGAAGTTGAACTGTGTAAGAGGTATGTACTAATTAATTATCAAATTAGAGATCGATAAACGAATAAGTGGGGTTGATTATATACTTTTAATTCAATGCGTTTTCTCTTTCGTCCAAAATTGTACTTTCTTCTTATTTTAACCTTTCTATTTATGTATTAATAGACTGACATCACATGAATATGCTACTCTCTCTGTAAAGAAATATAGGAGTGTTAAACACTTATATTGTTGTAATAGACTGACATCACATGAATCCAAAATCCTCGTTTGTCTTCTACCATGAAATTTGATTAATTTTGTTGTAAATATCTGTTGAAGTTATATGATGATCCCACGGTCTTGTCATGATTTAGTGTGTCCTTGCATGCTGCTCTTGCGGGTGCTATTCCTTCCTTCTGGAACTATTTGATTAAGAATGAGTTTGAAGCACCCGCAAAAAAAGAAAAAGAAAAAAGAATGAGCTTGAAGCATTTCCCTATCTT | |||||||||
gi|222361744|gb|GH725464.1|GH725464 G118.110N09R010925 G118 Triticum aestivum cDNA clone G118110N09, mRNA sequence TATTTCTTTACGGAGGGAGAA EST sequence (targeted fragment marked with yellow): GGATCAATTAAGTCATCCTATACAATTGGACTCTCGTACACCTCTGATCAAGCAAGAAAGTAAAAGAACAGTTCTTCTACCTAGCCCCCGGGGTGGCCACAGTCCCTACCTCTCTCAAAAGTCCTAGTTTATAAGTCCTTTGCTTCAACATCGGATTGCCTAATCCTGAACCAGCTAGATTTACACTTCTAATACCAGCATTGTACACCAGATCAGGATGCCACCTTGACAAAGTAAGACGACGTGGTGTCCCTAGTCTGATAACTATGTCTGGTTTTCCATTTCTGAATACAGAAATGTACTCCCTCCGTAAAGAAATACTAGATTTTTTAGACCACTAAAGAGGGGGTAGTTATTTCTAATCACTGGGACTATTGTCCATCCTGAACTTCATTCTACTCAAAGAACATTCTGCATCTCAAGATTACACTCAAAAGTATTCGCACATTGGAATTGAAGCAAGACTACAACGTGTTAGCTTTACCTGAGATTTGGACCAGCAGAGATCAAGCACATCCTTTAAATGCCCTGCGAAGGTTATAACAGGCTTCTCAGACAGTGCAAACACATGCTCTGGCACCATCAACTGGTCTGAGCCCCCAGATCTCCGACTCTGCAGATCCGTTGCTGGCAGCTTCTTCTCCCAATGGCTG | |||||||||
gi|222366584|gb|GH730635.1|GH730635 G750.118J01R010803 G750 Triticum aestivum cDNA clone G750118J01, mRNA sequence TATTTCTTTACGGAGGGAGAA EST sequence (targeted fragment marked with yellow): ATAAAATTTTCTCAAATGGTTGCCACATCCTAGAAGCAAGTTGCACCAGAAAATGCATATGCATCAGTATTCCATACCGATTAGTTCCCCTCCAGAATGCTCTAGATTATCTCTATGTAATAAATATTGCAAAGAAAAATCAAAGTACCACAATGTACTCCCTCTGTAAAGTAATAGTACTCTGCTTTCCAAATCACTAAGTAGTGATCGGTTCCGCTCCACTATTGTGTTGTTGACTAACTCCTGAACATTGTCTTGAGCGCATCATGATTGTGGTCGTTGATGACTATACCGTGATATGTGCAAACTTGATGAAGAGTAGCTTGAGCAACCTTTTTCTTCTGAAAGCTATTGATCACAAAATTTGTAATGCCAATTTAACTTCAAAAGAACATGGCAACATGGAACCTTCTCTTTNATGACTGCTAAACATCGTCACCATAATATTTCAAT | |||||||||
gi|222371359|gb|GH733182.1|GH733182 FUZ.001B09F001109 FUZ Triticum aestivum cDNA clone FUZ001B09, mRNA sequence TATTTCTTTACGGAGGGAGAA EST sequence (targeted fragment marked with yellow): CGAAAGATACTCCTGTCGTCCCCGGGATGTCGGTGACCAGCCTGCATCGGTAGATCACATTAATATTGGTTCAGCACTTAATTACAAAAAAGCACTCCCTCCGTAAAGAAATATAATAAAATAATGATCTAAACGTTTTTATATTTCTTTACAGATGGAGCAGATGAGTAGTCTTCAGTGAAATTGATGATTAAGTTTGTGCAGGAGATTCTGGTCTCAGGAAACCTCTGCAGTTTGGACCTTTGGGGTGACCCTTTTAGGCTATGAGTAGGCCATCCAGGTATTTGCGAATTGGTTGTCAAGCAGCCCCAGCATGGGCATGTAAAGAGGGATACAAATTTGGCGCCCCCTGCCTCAATATAAGTGCAAAGCAAACATTGCCTTCCATGCCGGTGTTCTAGATTTTTATATCGCGTCACAGGAATTAAGTAATTGATGGTGTTAAAATAAATATTTCTCGCCGAAGCCAATTTTTGTGCTGCACAAGTTTTATTTGAAAAATAAAAACTGAATAAAGCATGAGATATGCATTTATTGGCATGTTGCACTATATATTAGTTTCTTTTAGATGATGACTCTTTTTATTTCTTACACTAATG | |||||||||