| mature miRNA: TCAACTATGGACTACATACGGAA species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|21973156|gb|BQ764684.1|BQ764684 EBca01_SQ004_H18_R carpel, pre-anthesis, no treatment, cv Optic, EBca01 Hordeum vulgare subsp TCAACTATGGACTACATACGGAA EST sequence (targeted fragment marked with yellow): GGCGCATCTCCTCCGGCACCACCACCACCACCACCGGCCACCGCCCCCGCCACCGCCGGAAGAAAGGGAGGGAAGAAAGGAAGGTCGGAATCGGATCAAACAAGGAGCAAGCAAAGCAAGATCCAACCAGACCCAAGATCCAACCAGACCAAACCAAGATCCAAGCAAACTATCAAACCAAGATCCAAGCAGAGCAAACCAAACCCAAGATCCAAGCGGGAAGGGAGGATGCTGCGGCGGCACAGAGGGAAGGGGAAGGGGAAGGAGTCGGCGTCGGCGTCGGCGTCGGCAGGGTCGGATTCCACCAACTTGTTCTACGAGCTACGCCCCGACTGCGCACACAACGTTCCCGACACCAAGTTCAAGATCAAGGTCTATTCTTTCCTCTTTCCTCTTGTCTTGTTTCGACACCAAGTTCAAGATCAAGATAAGAATAATGGATGTTGATTTCAGATTGGCAAGACGCTGAGCGTACGGAAATGGCACGCCGCATTCACGCACCACGGATCCCTCAACATCTCCTCTGTTCTAACCAGGATACAGAGCGGGGTATGTACTCTACTCTAGTCATAATTTAGAGTGTAATTTCAATCATTTTTGCTCCGTATCTAGTCCCTAGTTGAATGGATCTTTAAAAGACAAAATATTTGGGAACGGTGGGAGTAGTAATTTTCTTCCTATAACAAAGTAACAAGTACAGT | |||||||||
gi|21158631|gb|BJ480160.1|BJ480160 BJ480160 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TCAACTATGGACTACATACGGAA EST sequence (targeted fragment marked with yellow): TTCGGCACGAGGTACTCCTTCCGTTCCTAAACATAAGACCTTCTAGAGATTTCAATATGGACTACATATGGATCTATATAGACTTATTTTAGAGTGTGCATTCACTTATTTTGCTCTGTATGTAGTCCATAGTGGAATCTCTAAAAGGTCTTACATTTAGGAACGGAGGGAGCAGAATGCTGTTCTCAATAATGCAACAGTTGAAACAGACAATCCTGATCTGCGTGATCGAGCTTACATATACTGGCGACTTCTTTCTACTGATCCTGAGGCAGCAAAAGATGTTGTTCTGGCAGAGAAGCCTGTGATCAGCGATGACTCTAACCAGCTTGACTCTTCGCTTCTTGATGAGTTATTAGCAAACATTTCTACATTATCATCAGTTTATCACAAGCCCCCCGAAGCCTTCGTCAGCCGTGTTAAGGCAGCTCCTAGGGCGGATGATGAGGAGTTCGCTGATGCTGGAGAAACTGGGTATTCGGAGTCACCATCTCAGGGAGTGGATGGGGCATCACCGTCCTCTAGTACTGGCACTTCATCAAATGTACCA | |||||||||