| mature miRNA: TCAGAGTTTTGCCAGTTCCGCC species: Pinus contorta database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|262137171|gb|GT244831.1|GT244831 PCO015.C21_H16 Pco01-Bark-Wounded-Norm (PCO01) Pinus contorta cDNA clone PCO015_H16 5', mRNA TCAGAGTTTTGCCAGTTCCGCC EST sequence (targeted fragment marked with yellow): GGGGGAACTAATTTTTCCCAGGCTGTTTCCTTTAGCCAAAGCTTAAGAGTTCTGTTTTTTTCAGAACTATCATTGCAAAGCCATGGAGGTCCATGAAACAGAGATGGGATTTCTGTTTTCAAAAAGATTTTTAGTTTGAAAATGTTGTGAAAATTAGCGATTTTGCATTCATATATTTAGTATAAATTTGCAATGGCTTGCTCTGAGATGGTCGTTAGCTTTTAATTCCACTATATTACACTGAGCATGTAATTCCTATTTTGTAGAAGGAAAGTGTTACGAAATAAATTGAGTCATGCCTGACCTTGGCTTAGTTTCTAGATTTCTTGGTGTGGAAATGACAATCCATTCAGTTCTGCAGGTAATTACTATTTCCCTTTCCAACCAGAAAGAGTTGACATCTCTCAAATACCGGGCAACCACCATGACGGCTATCTTCAAGCAGATTTGGCAAAACTGTCCTTTTGAAGAGAGTTTTCAACAGTCAAAAGGTGAGAGATATGGGTGGATCTGGGAAAACTCTACTTCTCAAGACAGTCTTCAACAGCCAAAAGGTGAGAGATAGAGGTGGATCCGGCAAAACTCTGCTTCTCAAGAGAGCCTTCAACAAACATAAGGTGAGGGATAAGCGTGGATCTGGCAAGACTCTGCTTCTGAAGAGAGCTTCCAATAGCGAAAAGGTGAGGGATAGGGGTGGATCTGGCCAGACTATGCTTCTGAAGA | |||||||||
gi|262157757|gb|GT267144.1|GT267144 PCO0213.CR_I14 Pco02-Xylem-wounded-Norm (PCO02) Pinus contorta cDNA clone PCO0213_I14 3', mR TCAGAGTTTTGCCAGTTCCGCC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTCTCAAGGCCACACCAGGCTTATCTTTAACATCATCATTGTAAACATCAGCCGCTAGTTCAAAACACCTAATACCAAATTCCTAGACAACTGCTGACCCAAAAATTAAGCTCCTGATTTTCTAAGGGTAACTTCCCTTCAACGTTTAAATAAACTACATCCAGTGAACATTTTTGGTTCTGAAGGCAGGAGTTAACTGGAGAAAATCCCAAATCAGCCAAACAAATTAAAGGGATGAAGATGTATAAAGCAAGGCATCTACAAAACAAATTAAATCTACCGATCTATACTCGGGTACTGTTGAAATCGGTAAAGAAAGTAACTAAACATTAAAATAATTACAAAGAAAAATCATATTTCCAAGGCAGAAGGATTAAGAAAAAACCAATATCTGCAAATTAGCACTTACTCTACAATTATTGCCTGCAAAATTAACCGCTCCTCCAAAATGTATAAAATAAAGAAGAAAATTTCAGTACATAAAAATAGCAGAGCGGTTACCAAGCATCGATGTATGCTCCTACTGAGCACATCTTATTTGTCCATTTTTGTAATTACTTAAAGGCACCGAGCATATCGAATTGCTCCATTTCTAAAATTACTTAAAAGGCACAGTAGGAATGGGCGGAACTGGCAAAACTCTGACCATCTCTGACAGTAAAATATGGGCGGAGTTATGCCAGCCCGCCTGTTCCTACCAAGCCAATAAGCAGAGGCGGCCATGGCCCGACTGCCTTCTCATTTCTCACAACCACCGCCCT | |||||||||