| mature miRNA: TCAGCATCCTCACCACCTGA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|60704959|gb|DN494769.1|DN494769 M125H02.5pR Populus female catkins cDNA library Populus trichocarpa cDNA clone M125H02 5', mR TCAGCATCCTCACCACCTGA EST sequence (targeted fragment marked with yellow): TGGTATTTAATGCCTGCAGGTTGTGATGAAGAGAGCACAGAGCATGGCCCAGGCGGCATGGACCACACGCCCTTCCCTTCAGTTGTCTTCATGGTCGTGCATTGGACCCCGCCACCGAGCCACAGCTGCAAGTTCAAATTCAGGAGAGGGAGGTTCCCCAGGATCTGGCTTAAAAGCTGAAACTTCAGAGCCTCTTCTTACATCTCCTGACAGTAACACAACCACAGCTTCCACTGGAACTATTGAACATCCTGCTTCTTCTGGAGGAGCAGAATGGACTTCAGAAATTGAATATTCTTGTACTGATGAAATGGCTTCACATGCTCATATGGGTGCTGATCTTGATCATGGAGAGGACCTCATGAGTGATTCACATGAAGACCGAATGAATGAAGTGGAGTTGTGGCAACAGCTTGAGCATGAGCTGTATGATAGATCAGATAGTGAGGATGCTGATGTGGCAAAGGAAATAAGGGAAGAAGAAGCAGCAGCCATTGCAGAGGTAGGTGAGGACCAGCCTGGAAGCACTGCTCCAGGAATGAAGGAAGTGCGCAGATTCTTCCCTCCAGGAAAGATTATGCATATTGTTACCCTGCATCTTGATAGTGCAGAGAGTGAAGGTGATACCCCCACCTCGAGTGGTTCTGACAACAACCAGCCACCGGTGGAGACTAAAGTTGGGATCTTCCCGGACTCCCAAAAC | |||||||||
gi|73893616|gb|DT496354.1|DT496354 WS01123.BR_C17 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01123_C17 5', mRNA sequence TCAGCATCCTCACCACCTGA EST sequence (targeted fragment marked with yellow): GCATTCCTGAGGTTGACAAACCGAAAGCCAAGTTTATCGCCGGAAGGATCATCCCCGCTATCGCAACCTCCACAGCTACGGCCACGGGTCTCGTGTGCTCGGAGCTCGTATAGGTTCTGGATGGTGGACACAAGGTGGAGGACTACCGCAATACATTTGCCAACCTCGCACTCCCTCTATTCTCCACGGCTGAGCCCGTCCCACCCAAGGTTATCAAGCATCAGGATATGAGCTGGACAGTTTGGGACAGGTGGATTCTAAAAGACAATCCTACCTCGAGGGAACTTCTGCAATGGGCTCAAGCATAAGGGGCTCGATGCCTATAGCATTTCACATGGTAGTTGCCTGCTTTACAATAGCATGGTTCCCTCGGCACAGAGACAGGATGGACAGGAAGAAGGTTGATCTGGTTAGGGAAGTGGCCAAAGCGGAGTTGCCTGGCATATCGTCACCACTTTGATGTTGTTGTCGCATGGTGAGGATGATGAAGGCAATGGATGTTGACATTTCCCCCAGTATCCGTTTACTTCTCCTAGGTTGGTCTTGGTCCATTTTCCCCAGCCAGCTCGTCAGTCTTGGATTTTAGGATGAGGGTTTGGAGTCCTTTCAACAGTTAGATTTTATTTCAATGGCTGCATCTGAGAGTACACAAGATTTGATATTTTTCACACAACCATGGTGACACAAACTAAATAGTAACTTATATTCCCCTGGGATGGTTTTTTATCGCTAGATATGAATAGGAAGTAAGGTGAAACCTGAGTTTTTG | |||||||||