| mature miRNA: TCAGGCTGTGTGGGATCCGG species: Pinus taeda database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|74158771|gb|DT628703.1|DT628703 EST1155273 Subtracted pine embryo library, Lib_B Pinus taeda cDNA clone PIMD105 5' end, mRNA TCAGGCTGTGTGGGATCCGG EST sequence (targeted fragment marked with yellow): CAAACTAAAAATCCAAAGATTATACTGGAACAAAAATATGGTTCTAAGCATCCAAAGACTACTGGATCAAAAATATGGTTCTCATCAAAGTATTTTGCCAAAACCAGGTGCGAGATTATATGCAAAAAAAGTAATATTGTAGCAGCAAAAAAATTCGATTTCAGGAAGGAAGCCTGCGTCTTTCAAAAATCCCAGCTGTGTTCATCTACAAAGTTCTGTCCTGCTGCCTTGGAGGTTGAAGGCCTAATTTTAACCCATGAAAACAGGGTTTGTAGGATCCGGTAATGCCGCAAAAACAAATGACACCGCCTCAGGCATTGGCGGAGGAAGTGAGGCCGTCATAAAATCAAATGAAAACGTCAAAGTGGCTGTAGGCATCGGTGGACAATGTGAGGCCTCATCAATACCGCTTCACTTTATCCACCAATGCCTACAGTCACTTTGACGCTGCTATCTTACTCTGTGGCGTTACCGGATCCCACACAGCCTGATTTCATGACTTCTATTAACCAAAACGGATCTGGGTCTGGTTGTCTCTCTCTCCTCCACCGCCTTCATTTATCGCCTATGTTACTGCTACAGGCTCGGTATTCTTCAAGCAATTACGGTTCCCCCGCGT | |||||||||
gi|70977531|gb|DR746267.1|DR746267 RTCU1_35_G07.g1_A029 Roots plus added copper Pinus taeda cDNA clone RTCU1_35_G07_A029 5', mRN TCAGGCTGTGTGGGATCCGG EST sequence (targeted fragment marked with yellow): GAGGGGGAGTGGCTCGCGGGCTTCTCTATCTGCACGAGGATTCTCAACTGCGGATTATTCATCGGGACATTAAAGCAAGTAATATTTTGTTGGATGCAAATCTGAATCCTAAGATAGCAGACTTTGGCTTAGCAAGACTATTTCCTGAAGATGAGAGCCACGTCAGCACAAGAGTTGCTGGAACTTACGGGTATATGGCACCAGAGTATGCTATGCAGGGGCAATTATCTGTAAAAGCAGATGTCTATAGCTTTGGCGTTCTCCTCTTGGAACTTGTTACAGGAAGAAAAAACAGTGATTATAATCTGCCACTTGATATGCAGACGCTTTTAGAATGGGCGTGGAGATTATACAAAGGAGGGAATATTGTGGATATGATTGATCCAGCCATAATTGAAATGTGCAACGTGGAGGAAGCATTGAGATGTGTTCATGTTGGTCTTTTATGTACACAAGCTGACTCATCACTTCGTCCATCCATGTCTGTCATCACTTTGATGCTTTCATCTCATTCTGTGACATCGCTGGAACCCACAGAGCCTGCTTTTCTGAGACCTCATGTTTCTGAAAACAGCAAGTCCACCAGTTGTGGCTCTGGGG | |||||||||
gi|61669936|gb|DN612436.1|DN612436 EST965486 Subtracted pine embryo library, Lib_B Pinus taeda cDNA clone PSABF50, mRNA sequence TCAGGCTGTGTGGGATCCGG EST sequence (targeted fragment marked with yellow): ACCTCTATTCAACTCATGAAAACAGGGTTTGTAGGATCCGGCCATGTGACAGGATCAGATGGCGGCGGCAGGCATCGATGGACGAAGTGAAGCAGCGTCTGCAGGTATCGGTAGCCGAAGACGAAGTGAGACAGTAGGCCTCCCTGCATCCAGCGATGCCTATAACAGCCACTTCGTCCATCAATGTCTACGGCCACTTTGACTCTGCCATCTGATTCTGCGACATTACCGAATCCCACAAAGCCTGTTTCCATAGAGTTCTGTTGCCCAAAACAGATCTGTGCCTTTCCCCGCGT | |||||||||
gi|57884241|gb|CX649412.1|CX649412 COLD1_35_D03.b1_A029 Root cold Pinus taeda cDNA clone COLD1_35_D03_A029 3', mRNA sequence TCAGGCTGTGTGGGATCCGG EST sequence (targeted fragment marked with yellow): TCCTCGTGGGCTTCTCTATCTGCACGAGGATTCCCAACTGCGGATTATTCACCGGGATATTAAAGCAAGCAATATTTTGTTGGATGAAAATCTGAATCCTAAGATAGCAGACTTCGGCTTAGCAAGACTATTTCCTGAAGATGAGAGCCACGTCAGTACAAGAGTTGCTGGAACTTACGGGTATATGGCACCAGAGTATGCTATGCAGGGGCAATTATCTGTAAAAGCAGATGTCTATAGCTTTGGCGTTCTTCTCTTCGAACTTGTTACAGGAAGAAAAAACAGTGATTATAATCTGTCACTTGATATGCAGACGCTTTTAGAATGGGCGTGGAGATTATACAAAGGAGGGAATAGTGTGGATATGATTGATCCAGCCATAATTGAAACGTGCAACGTGGAAGAAGCATTAAGATGCGTTCATGTTGGTCTTTTATGTACACAAGCTGACTCATCACTTCGTCCATCGATGTCTCTCATCACTTTGATGCTTTCATCTCATTCTGTGACATTGCCGGATCCCACCCAGCCTGCTTTTGTGAGATCTCATGTTTCTGAAAACAGCAAGTCCACCAGTTGTGGCTCTGGGGTTTCACAATCTGCTGCATCTCACGCTCCTCCGTCAAACGCCGATGCTTCGATTACAGAGTTGGTAACCAGGTAACGCGCATCTCGGCCTTAAAAAATGGTACGTCTTTCAATGTCGTGACATAAGTGGGTTCAAAGATACGGACGTGCATAATGTGTAATAATATTACTTTAGTATGCAATTGTAATATTAAGTGTGTGCGTTTT | |||||||||
gi|34345614|gb|CF387197.1|CF387197 RTDR1_11_B11.g1_A015 Loblolly pine roots recovering from drought DR1 Pinus taeda cDNA clone R TCAGGCTGTGTGGGATCCGG EST sequence (targeted fragment marked with yellow): CTGCAGCAAGCCTATCAGAAAGTTTTCACGATGTGATGCTGGCAGTAGAAGCTGCCGCCGGTACCGCGCCTTCCCCTCCCTCCACACCGCAAGGCCCTTCCCCATCACGCTACGGTCCCTCCATCTCGCAGGGCACATACACGCCGCAGTACTCTCCACTCAAAGCCAAGAGTCGTCACTCTACACCTCTCCGATCTTCCTTCAGATCTCCAGAAAACGGCGCCTATACTGAGCTCCAAGAGGTTCGTTGCTACGTTTGAGCCTCGCGTCGTAAACAACTCCCTGTCAGAAATATAGTCTGCTCCAGCGCGGGTTCATCACCCTTGAGGGTAAATATCAACGTCGTCGAGAAGAGCTCGTGAAACTCAAAGAAGAGCTACGAGTTCAAGCCGAAAGAGAAGCTCTGCACACCAGCGAACTAAGACACAAACTTGAAATCAATGAAGCGGAACTGAGGAGAACCCGTGATGAGTTTGGCAATGTAGCTCATGCTACGCGCGCCGTCAAGGACATCGTAAATCAAGTTATGGGTGAACTTTCGACTCAACTGAAATGCCCAATCTGTTCAAATCTATTGCGGATACCACACAGTCTGTGTTGCTCCCACGTCGCGTGCTGTGTCTGCATCATCGATTCTTTCCAACACCACGGGGTAAAGTGCCCGATCTGTGGGCAACCTTGTACACAACCCCCGAAGCANGAGGCTGTGATCGTTGGCATCTTATCCGTCACATATAAACTCTTTAAGTCGGAGGAGCCCACGTTCACTTCA | |||||||||