| mature miRNA: TCAGGTCCTCGGTGGTTTAT species: Pinus taeda database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|74163696|gb|DT633627.1|DT633627 EST1148558 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW91 3' end, mRNA TCAGGTCCTCGGTGGTTTAT EST sequence (targeted fragment marked with yellow): CGGCCGGGGACTCTCACTCTGCTGCCCCTTCACAATTATTTTGAAGATTTCGACCTTTCAACCTCCCGATGGACATCCCCATTTTGGGATTTCTATGGTTTTCATTTTATCTTCATTGCCTTAATTTCGCTGGTGGGAGGAGCATTTCCTTCTTCATTTTCCAATCTTATCCAATAAGAAGGAAGAGAGGTATCAAGTATGGAGCAAGTAACAGCGAGGACAAGTATGGAGCAATACCAGGTTTTCATCAACCACCGAGGACCAGACATGAAGAATACTCTTGCCAGCCTCATCTACCATAACTTCACATCGTACCATTTGCGCACTCACTGTGGAGGGGTGGAAGATAACGCTCAGAGTAGCAGAAGCTATAGATATTTCTGCTCTGCAGTTCAAAACGAAAGAAAGGTGAATCCATACTTATTTCTTCATAATCCAGGGTAGATATTTCACTTATTTATCAAAACCCAGTATAAATATTTCACTTATTTATCGACTATCAACTCTCGGGATCTTGAATCTTCCGTTCTCTGACAATGGGGATCTTGATTCATCCGTTCTGTGACTATGGTAGACTGCAAATATTTCTGTATACAGTGATGACTGGAAGTTTGTGAAAGAAATTGAAAACCTTGTAATAGAACATCTAAAATATCACTTAGAGATAACTACTCACCCAGTAGAGATCGCTACACACCTAGTTGCAATAGACCAGGCCTTTCAAATATTTGGATGATCACAGTCACTGTAGCGCAATTTGATTGTAGATTTGGGCATATTTTGGAAATTTGATGGGCAGATTTCTATCAAATTTGATAGCTAAGTTAAACAATGGGCTTTATCATGTCCACGCATTTCCGAAATAT | |||||||||
gi|68251926|gb|DR384328.1|DR384328 RTHG1_1_B12.g1_A029 Roots plus added mercury Pinus taeda cDNA clone RTHG1_1_B12_A029 5', mRNA TCAGGTCCTCGGTGGTTTAT EST sequence (targeted fragment marked with yellow): GTTACTTGGAATATTGTCTTGTATATACATCGATCACTATCGTTTTCATTTGAAGATCTTCCCAACTGCAAGCTAGCATCATTCCACTCACATCATAAGTGAAGAAAGGGAAGGCAGGTGGACAATGGGATCTACAGCTGTTTCACCCCAGTCTGTTCAAACCACTGAAGCCGCACAAGTGAATGAATTCAGAAGTCAAGAGTTAACCATGCAAAAGAAGGATGTTTCAGAGGTTCCAATTTTGTCGCTTTCTGAGGTAATAGATAAATTGCGAGAGAGATTGGGTGGATGCAGCAAGCAACCTTACCCAGCTATGTATTCAAGCATATTTGGGGGTATTACCACTGATCCAACAATAATGGTAATTCCTATTGATGATCACATGGTCCACCGAGGACATGGTGTGTTTGACACTGCTATGATAATTGATGGTTATCTCTATGAATTGGACCCACACCTGGACCGGTTTCTGAGATCTGCGTCCGCGGCAAAGATTATTCCTCCTTTTGACCGCTTATCTTTAAGGAGCATTCTCTTGCAGACTGTAGCTGCTTCACAATGCAGGAAAGGATCTTTGCGATATTGGTTAAGTGCAGGTCCAGGAGATTTCCTACTTTCCCCTGCTGGATGTCCGAGTTCTGCGTTCTATGCCATTGTTATTGAAGATAACTATACACCAAGTAGCCAGGGGGTCACTGTTATAACATCCTCAACTCCTATGAAATCTCCAGAAATGGCAACAATG | |||||||||
gi|51496569|gb|CV033736.1|CV033736 RTNACL1_36_G09.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone RTNACL1_36_G09_A029 3', m TCAGGTCCTCGGTGGTTTAT EST sequence (targeted fragment marked with yellow): CTTCTGCTAGTTGGGGAGCTTATCTGCTAAAGAGGAACATCTTAACCATGTCCTTTGCACCAAGGGACACACATGAAGCACAGGTGCAGTTTGCTCTGGAACGGGGTGTTCCAGCAATGATAGGCATCATGTCGTCTGAAAGGATTCCATATCCAGCCAGAGCTTTTGACATGGCTCATTGTTCTCGATGTCTTATTCCATGGAAAGATTACGATGGTGTCTACTTGATTGAAGTGGACAGGGTATTGAGGCCTGGGGGTTACTGGATTTTATCTGGCCCCCCAATAAATTGGAAAAAATATCATAGAGGATGGGAAAGAACTCCCGAGGACCTGAAACAAGAGCAAGATGCTATTGAAGATGTTGCCAAACGTTTGTGTTGGAAGAAGGTTGTTGAAAAGGGTGATCTTGCTATATGGCAAAAACCCATGAATCACATGGAATGTGTGAAGAACAGAAATGTTTACAAGGTTCCTCATATTTGTAAAAATGATAACCCTGATGATGCTTGGTATAGAAAAATGGAAACCTGCATAACACCACTTCCAGAGGTCAGTGATATCGATGCAATTGCAGGAGGAGCCTTAGAAAAGTGGCCGAAGCGTGTAACAGCTGTTCCTCCCCGAATAAGCAGTGGCAGTATTCCTGGAATTACTGCTAAAAAATTCAATGAAGATTCTAAACTATGGAATGACAGGGTAGCAAACTACAAGAGGCTTATAGGACAACTGGGTCAAGGAAGATACCGCAATATCATGGACATGAACGCTGGTCTAGGAGGCTTTGCTGCTGCCTTAGTCAATGATCCTGTGTGGGTTATGAACGTTGTGCCATCAGATGCTAAACATAACACTCTTGGTGTCATCTA | |||||||||
gi|74165519|gb|DT635449.1|DT635449 EST1150380 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMGG94 3' end, mRNA TCAGGTCCTCGGTGGTTTAT EST sequence (targeted fragment marked with yellow): CGGCCGGGGGTAGCATCTATAGCAAATCAATCAAAGGATACTGAGTCTGGAGATGCACAAGGGTTGCTGCATACATATCTACCTTTGACAGAGAATGGGGTTGAACAGAATGGACAAAACATTTTAAGGAAAGCTGGTGATGCAAATGAAGTAGAACTCTGTATTGTGTCAGATGGTATTAGGGCAGATGTGATTACTGACAATGATCTCTTACATGATGTAAAGGTTTCTCAGGCCATGTCAACAAGCTATGTTAAAGTCTCTGCGAATGTTACATTGAAAGAGGCAATACAACTCATGATAGAAAAGAAGCAAAACTGTGTGCTTCTTGTTGATGATGAAGGTCTACTAGAGGGCATCATGACTCTTGGAGATCTCCAAAGGCAGGTGCAAGGGGCAGCCGATGCTAATGCCCAGGGTGATACAATTACGTTGGATGTAAATGCAACACCAGTTTCATCTGTTTGTACACGGCGAATAAATTATCGAGGACATGAGCGTGGGATTCTGGTCTGTTATCCAGATACAGATCTGATGATGGCAAAAGAAATTATGGAGGCTAGAGGAATAAAACAGTTGCCTGTTGTTACACGTGGTGGAGAGCGAAGGCAAGAGCGAGGGCATACACTTCTCGGTTTACTATGTCATGACAGCATTCCCAATTGTCTGAGGGAAGCAAGAAAACAAGTCATGGCACTAGCTGCTCAGTCAAGGCAGGATAAAGATGACGAGATCCTGCTTAGTGGACACTGAAAATA | |||||||||
gi|51495787|gb|CV032962.1|CV032962 RTNACL1_19_H09.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone RTNACL1_19_H09_A029 3', m TCAGGTCCTCGGTGGTTTAT EST sequence (targeted fragment marked with yellow): TTCTTTTTTACAAGGCTGTCCCATATCTATCTATTGAGCATAGAGTTATAGACAAAACACCCACATGGTCAGATGGTTTTCCATCTGGCTGTCTATTGAACATAAAGTTATAAAACACCCACATGGACCGAGCCTGTTTTATATCTTTTTATCTATTAAACTTAAAGTTAGAGACAAAATACCGACATGGCCACGCGAACTGATCTAATGGCTTTTACCATTTGGCAGTCAAGTTTTCCCAAATCCATGCACCAAAAGGGGAATGACCATGATATTCGTGGTGTTTGGCCGTAGCCGTTTTGAACATCATAAAACATCGTGGCCCAGACGACAATAACGCGTTCGGTTCATCTTCCTCTTCCTGCTCAAGAGCAAGAGGTAGCGTCCAATACTAAATCGGAGGAACAAATTAAAAAAACAGCAGTAAACATGTTCGAGTAGAGTGTGAAGACCTTGTTTAGGCATATGTGGTAGGGGAAACACCAAATCGAGATAGACTTCCAGCTTCTCCAACAAAACTCGTAATCCATGTAAACGAAGGCGGAGGTGCTCTTTTCATCTGCTCCACGATGGTTTATCGTAAACAAACGATGAGCAATAAACCACCGAGGACCTGATGTAAAGATCACCTTCCAAACCTCTTCCCCTATGTGGTAGGATAAACACCAAATCGAGATAGACTTCCAGCTTCTCCAACAAAACTTGTAATCCATGTAAACGAAGGCGGAGGTGCTCTTTTCATCGGCTCCACGATGGTTTATTATAAACAAACGATGAGCAATAAACCACCGAGGACCTGATGTAAAGATCACCTTCCAAACCTCTTCCCCTGCACCCCATCGCT | |||||||||
gi|74167324|gb|DT637253.1|DT637253 EST1152184 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMH143 3' end, mRNA TCAGGTCCTCGGTGGTTTAT EST sequence (targeted fragment marked with yellow): CGGCCGGGGGTGACGCATCCTGGGGGTCCACCACGACGAAGTTTTGTAGGATTTCCCCTGCGCCCTCATCACTCTCACTCTGCTGCCCCTTCACAATTATTTTGAAGATTTCGACCTTTCAATCTCCTGATGGACATCCCCATTTTGGGATTTCTCTGGTTTTCATTTTATTTTCATTGCCTTAATTTCGCTGGTGGGAGGAGCATTTCCTTCTTCATTTTCCAATCTTATCCAATCAGAAGGAAGAGAGGTATCAAGTATGGAGCAAGTAACAGCGAGGACAAGTATGGAGCGATACCAGGTTTTCATCAACCACCGAGGACCAGACACCAAGAATACTCTTGTCAGCTTCATCTACCATAACTTCACATCGTACCATTTGCGCACTCACTGTGGAGGGATGGAAGATAACGCTCAGAGTAGCGGAAGCTATAGATATTTCTGCTCTGCAGTTCAAAACGAAAGAAAGGTGAATCCATACTTATTTCTTCATGATCCAGGGTAGATATTTCACTTATTTATCAAAACCCAGTATAAATATTTCACTTATTTATCGACTATCAACTCTCGGGATCTTGAATCTTCCGTTCTCTGACTATGGGGATCTTGATTCATCCGTTCTGTGACTGTGGTAGACTGCAAATATTTCTGTATACAGTGACTACTGGAAGTTTGTGAAAGAAATTGAAAACCTTGTA | |||||||||
gi|57887793|gb|CX652964.1|CX652964 COLD1_62_C07.g1_A029 Root cold Pinus taeda cDNA clone COLD1_62_C07_A029 5', mRNA sequence TCAGGTCCTCGGTGGTTTAT EST sequence (targeted fragment marked with yellow): GAGGACGTGTCGAAGGAGATCGCCTGATTTCCACGGTGGAGCCATCGCGAAGGTCCTCGGAGTTGTCAAGACACTCTTCCCTGATAATGAAACCGATCTCGTAACGCTCGAAGGCGGTCTTATCATCACTCCGTATCACCCAGTGAGAGTAGAAGGCAAATGGTACTTCCCCAAAGACCTCGCTCCAGTTGCAAAGAAACCTTGCGAAGCAGTTTACAGCTTTGCACTCGAGAGCGATCACACCATGGTCATCAACGGAGTTGAATGCGTGACTTTGGGACACAACTTCCAAGACGATGCAGTGGTTGCTCATCCATACTTCGGATCTCAGTTAATCATCGAGGACCTCAAGAACATTCCAGGATGGGAGGAAGGCCTGGTAGAGTTCGTTGCTGGCTGCATGATTCGTGACACTAAGACAGGATTGGTGTCGGGACTCCGCTACGAATCCTTGTTTAACTTAGGTGCTTGAATGAACTTCATCAATTGCGATTCTAACACAACTGTACAATAAATTCACTTATTAATGAACAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|57883655|gb|CX648826.1|CX648826 COLD1_31_E05.b1_A029 Root cold Pinus taeda cDNA clone COLD1_31_E05_A029 3', mRNA sequence TCAGGTCCTCGGTGGTTTAT EST sequence (targeted fragment marked with yellow): TATGGATCCATGTTATTTCATCTAAACACCAATTTCACCTAAACACCAATTTCATTCTTGACCTGGCTTATTTCATCTAAACACCAATTTAATTCTTCACCTGGCCTGTAAGCAGAATTATGAAAAACAGATTAAAATAAAGCAAAATTCAAAGAACATATAAAGAAGAAGAAGAACAACAACAAAAAACCAAATCGAAACATTTTTTATACATCTAGGCTCTCAGTACTAAATACATCTGATACAATATGGATCTATGTTTGCACTATATTGACTCAAGCGTGTTGTCAGGTAGAGAAAATACCCAGTTAGACAGAGACGGTTGCAATAGCTGCAATGAGGCAAGATTCCTAATTCCGTGCAACCAAAGGCGAGGTATCATTGTTGTCTGGGCCCCGGGGGCTATGAACAGCATAAGTGATCATTAACCACCGAGGCCCTGACGACAATCACACATTCGCTTCCTCATCTGACTCGAAGACCAGATCAAAAAAAAAAAAAAATTGATCACCCTCTGAAACCGGTGGTAAAGTGCTCATCCCCAGTAGGGTTTAAGGAGGATAAACTCACTCTCACACCACTTTGAATCTGAACATGGGGCATAGAAAATACCCACATGGACAGGAGCCATCCATCCAAACGAATGCGAAGGTATTCTTCTACTCTAGGTCACTATGGTTTATTGATAC | |||||||||
gi|66980979|gb|DR057412.1|DR057412 RTNIT1_5_D12.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone RTNIT1_5_D12_A029 5', mRNA s TCAGGTCCTCGGTGGTTTAT EST sequence (targeted fragment marked with yellow): GACCTTTCATCTCCTGATGGACATCCCCATTTTGGGATTTCTCTGGTTTTCATTTTATCTTCATTGCCTTAATTTTGCTTGTGGGAGGAGCATTTCCTTCTTCATTTTCCAATCTTATCCAATCAGAATGAAGAGAGGTATCAAGTATGGAGCAAGTAACAGCGAGGACAAGTATGGAGCGATACCAGGTTTTCATCAACCACCGAGGACCAGACACCAAGAATACTCTTGCCAGCCTCATCTACCATAACTTCACATCGTACCATTTGCGCATTCACTGTGGAGGGATGGAAGATAACGCTCAGAGTAGCAGAAGCTATAGATATTTCTGCTCTGCAGTTCAAAACGAAAGAAAGGTGAATCCATACTTATTTCTTCATGATCCAGGATAGATATTTCACTTATTTATCAAAACCCAGTATAAATATTCCACTTATTTATCGACTATCAACTCTCGGGATCTTGAATCTTCCGTTCTCTGACTATGGGGATCTTGATTCATCCGTTCTGTGACTGTGGTAGACTGCAAATATTTCTGTATACAGTGACTAATGGAAGTTTGTGAAAGAAATTGAAAACCTTGTAATAGGACATGTAAAATATCCCTTAGAGATAACTACTCACCCATTAGAGATCGCTACACACCTAGTTGCAATCGACCAGGCCTTTGAAAGATTTGGATGATCACAGTCACTGAGCGCAATTTGATTGTAGATCTGGGCATATTTTGGAAATTTGATGGGCAGATTTCTATCAAATTTGATAGCTAAGTTGAACAATGGGCTTTATCATGTCCACGCATTTCCGAAATATTCCAAAATCTTATTTGCCCAAATTACTCATCACATTCAGGAACAA | |||||||||
gi|51497958|gb|CV035123.1|CV035123 RTNACL1_13_F05.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone RTNACL1_13_F05_A029 5', m TCAGGTCCTCGGTGGTTTAT EST sequence (targeted fragment marked with yellow): GCTTGCCTGGTATTCGTCCATACTAATGTGAATAACTCGTGCGGCCTTGACATGCAAGTTCTAGAGATTTTGAAAAGAAACTCAAATATGGAATGCTTGATGCCATTGTTGCAATAAGCTTGTAATATTCAAGGTTACATGCTTGATGCTACACTAAAAAAACAACACTAATTACAAGATTACAACTGCAGCTCAACCCTAGCATTATCTCCTCCTTGTAATTTAACTCATAAGCTACCGTGCTGGTTTTAATTGAGATTAGAACCCTCTTCAGCCTAATTCACGAGCTGTTGATCTCCATATGTAGATATTAATTATCGAGAACCTGACTTAAAGAACCCAGACAAAGCCAGGCCTCATTTGTTAGATTATGCTGTCATTATGGATTATTGAGTTTTTTAGTACTACAGTTATCCCTGAGCGGATGTAAAAGCCTTGTGAGGGTCTATCCGCTTCCTGTACATTATCAGTGTTTGAAATCGTAACATTCTTTCCAATCCTTGCATTTTTGTCAATAATACAATTCCTTATTTTTGTGTTCTTCCCAATTCCAATAGGTACTTTCCCTTCTGCTAGGAGTGCTGCAATCTCAGCCTCTGTTTCATAATAGTCAGCGCCAATCATCATGGTATCCTTCAATTCAACTCCAGATTCCAGACGTGAACGAATTCCAACAATGGAATGCTCGATATTGCATTTCTGAAGAAAACATCCATGTGAAACTATTGAATCCCGTACCTGGCATTTATCTATTTTAGTTGGTGGCAGAAAACGGGGTGATGTGAAGATTGGCTTCTTGGCATC | |||||||||