mature miRNA: TCAGGTTATAAGACTTTCTGG species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|86869141|gb|CI335708.1|CI335708 CI335708 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone TCAGGTTATAAGACTTTCTGG EST sequence (targeted fragment marked with yellow): GATCAAAGTCAAAATTTCTTATAACCTGAAATTGAAACGGAGTAGAGTACTATTCAGTATTCGTCCAAGGCACAAGTAAATGTAAGAACACCAAACGTGGCAAATTGCTGGTCATCCTAGACATCCAAGGATACAGAACTTATACTAGCACCATGTAGTACACAACACCTAGCTAGATGACCTCCAGTCCTAGTACTCGCTCCACCTACATATACAACTTTGTCCTCTTTTTTTACCCGGCAGTCTTGACCTCTTGGGACAAACTGCAGGCAAAGCATCTGTATTCTCTCCCTTTTTGCGCTCTCAACAAGGGAAAAGAATGTGTAAGTCATGTGGCTACCGCCATTGTGCTTGGGATTACTGAGCTCTGGAAGCTGTCGTCTGCACATTTACCTTTTTCATCTGGTCTCTTCCTGGTACGCCACAATAAACGAATAGGGGTTACTGGGA | |||||||||
gi|86874504|gb|CI316870.1|CI316870 CI316870 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone TCAGGTTATAAGACTTTCTGG EST sequence (targeted fragment marked with yellow): GCAACCAACAGCTTCACTTATATATATAAATAAATAAATAGAGAGATTACGAATTCAAGAATCAAGCTGCACCTAAACACATTAGGGGAACTCTACCGCTAATCCAGAATATGCTAATCTATCCTGCTTAACGACGATGTCGTAATGTGGTTACAAGGGCCATAATGCCATGCGAAGTGACATCCACAATGCCTCTTCCATTGAGATTTAATTTGTTTGTCGCAGTAGCGTAAGTAGTACTTCCTCCGTTTCATATTATAAGACTTTTTAGCATTGCCCATATTTATATATATGTTAATGAATATATATATATATATATATGTGTGCGCGCGCGCGCGCCTAGATTCATTAACATCTATATGACTGTGGGCATGCTAGAAAGTTTTATAAACTGAAACGGAGGTCGTAGATTATAAGATAGGGTCCCATTTCATTACCCAACAATGGGGTACAGTCTTGGTTACCGGCTCACCCACTCGTCTGGATGCTCTTCCCGACCTATCTATACTTCATAT | |||||||||
gi|88257301|gb|CI359689.1|CI359689 CI359689 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone TCAGGTTATAAGACTTTCTGG EST sequence (targeted fragment marked with yellow): GTGAAGAAATCTGCAGCAAACTTGTAAGTGTAAAACAATATGGCAAGGTGTTGCCGGCCGTCTCAAGTGCAAACAGATGGCTACACTTGACCGTTCCATCCAGGTAACAAAATACATAATATAAATCTCTTCGACAGACATCAAAGCCACACGCTAAGAACATAGAGACTGAAAGGCACGCTAACAAATAAAATTCTAAAACCCACGTAGACCTAAGTAGGGCAGGCCTACATGGTCAACCGCCACATAACCTTACCTCACAGTGACTATATCATCAATCTTCAGTATCATTCTAACACACTCGCAAGCTAGTGTGATGGCGCTTGTGCTCACCAGCAAAGGTTGCACAACGTTCTCCTCCAGGATGTTTTGTAATCTGACCCTTCCTCACATTGATGCCTGCATTCTTCTCACCCTTGGCATGACGATTCCGAAGCTCAGTC | |||||||||
gi|88211549|gb|CI211189.1|CI211189 CI211189 Oryza sativa (japonica cultivar-group) same as Lib 33(supermix) Oryza sativa Japonic TCAGGTTATAAGACTTTCTGG EST sequence (targeted fragment marked with yellow): TGGACATGCTAGAAAGTCTTATAACCTAAAACGGAGGAAGCAGCATATAGAACACACAATCTAATAGGATATATGTCCTGATGTACAAAACATTGTTGCCCTAATTCAAGAAAAACACTTTGATTATCATAGGATACATGTGGTTTCAACTTTGAATTCATCTCCTCAACTCACTCCATCAGGGCCACACTCTGGCAATGCCGCCGAGAAATTCAAGAATCCGATCGTGTCATCTTCCAGCTCAAGATCTCGCCGCGGTGGGCTTGGCCGCGGCGGACTCAATGTCCTCGTCGTCGGCGTCGGCGTCGGCGGCGTCGGCGTGCATCTCGAGCAGCTCCTTGATGGGGATCATGCTCTGGCCGTCGGTGATGGCGATGGCGATGTCGTTGGGGAAGAGCTTGTGGAGCACGAAGGCGTGGATCATGGTGGTGGCGAAGAGGGCGGTGACGACAAGCGTGGCGACGGCGGAGAGCGCGACGCAGAGCGCCCTGGTGAGCGCGTTGTCCACCTCGGTGGAGTAGCGGATGGAGGCGATGGCGGCGCCGGTCATGGGGAACGTGTACGCCCACCACGCCAGCG | |||||||||
gi|88269744|gb|CI381042.1|CI381042 CI381042 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone TCAGGTTATAAGACTTTCTGG EST sequence (targeted fragment marked with yellow): ATCAAATCAATAATTAAATATATTTTCATAATAAATTTGTCCTGGCTTGAAAATGTTATATTTTTTTCTACAAATTTGTCCTGACTTTGACCAAAAATCAAAACGTCTTATAACCTGAAACAAAGGGAGTATATAATTTCTTAGTCTACAGCACTCAGCAGATGGCAGCAAAAGTGTGTTCCTCGTCTAAATGATTGGCATTGAGTTGCTTCACCAGCGTCTACAGTAGATTTTGACAGAATGAACTGCACTCGAGAAGAAATCAACCAATATCAGCATTGGCTAGGATTGTCTACAAAAACCATCTTCTGGCTCTGGCGAACACAACCATGTGCATCAGTTTGGTCATGTTGTCGTCTTTGTTTGATGGTGATGGATCATCCCGTTCAATAATTA | |||||||||
gi|86484280|gb|CI126913.1|CI126913 CI126913 Oryza sativa (japonica cultivar-group) Panicles more than 5cm stage and Panicles one TCAGGTTATAAGACTTTCTGG EST sequence (targeted fragment marked with yellow): TTTTTATAACTATACTATTTTTTCATCATGCATTGCACAGCTGATACAATTATGTTCATAGCAAAAGGGGGGAACAAGGTGAATTTGTATTATATGTTATGATAAAAAGAACACTTTTACAATGCTCCTGATATCAATCAGTCCCACTTAAATCCCAACAAGAGGGAAACAAGAAAATGTACACACGCACTGACTACTCTTGACCAGTACGTAAAACAATCACAGTAATAACTACTTTATCTGTTTTATATCATAAAACTTTCTAGCATTGTCTACATTTATATAGATTTTAATGAATCTAGATATATGTGCATAGATTCATTAACATCTATATTAATATGAACAATGCTATAAAATTTTATAATCTGAAACGGAGGTAGTAATAAACAGTGGTAGCAGCAGCTAGCTAGCTAGGCTAAAAGCTTAAAATTAAGCTAGTAGCAAGCAGCTGCTGGAGGTGTC | |||||||||
gi|88225312|gb|CI225228.1|CI225228 CI225228 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) and mixed s TCAGGTTATAAGACTTTCTGG EST sequence (targeted fragment marked with yellow): TTGGAAAAAGGTGAATTTGTATTATATGTTATGATAAAAAGAACACTTTTACAATGCTCCTGATATCAATCAGTCCCACTTAGATCCCAACAAGAGGGAAACAAGAAAATGTACACACGCACTGACTACTCTTGACCAGTACGTAAAACAATCACAGTAATAACTACTTTATCTGTTTTATATCATAAAACTTTCTAGCATTGTCTACATTTATATAGATATTAATGAATCTAGATATATGTGCATAGATTCATTAACATCTATATAAATATGAACAATGCTATAAAATTTTATAATCTGAAACGGAGGTAGTAATAAACAGTGGTAGCAGCAGCTAGCTAGCTAGGCTAAAAGCTTAAAATTAAGCTAGTAGCAAGCAGCTGCTGGAGGTGTCAGCGGATGCACTTGCCCGGCGTGGTCCATCCGAAGCCTCCCCGGCGCCTCGCCGCCGGCGGTGCCGCCGTGTAGTTCCTCCAGTCGCGGAGGACGGCGGCGAGGTCGTGCACCTTGTTGGCGAGGCCGGTGCAGCAGTTGGCGTGGAGCGTGCAGA | |||||||||
gi|87007255|gb|CI277330.1|CI277330 CI277330 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa TCAGGTTATAAGACTTTCTGG EST sequence (targeted fragment marked with yellow): ATGCTAGAAAGTCTTATAACCTGAAACGGAGTGAGTATAAAATACTACCATGATGCCACGATGTGGTATACTCTATAACAAGCCATAAACAAACGCGAGAAGAAGATCAAGGTTAATGGATCCGAGAATGAGCCGTCGCAACTTGCAAGAACCGGAGCACGGCGGCGCGGAGGAAGAAGACCGTCTTGTTGCTGCCGGCGACGGCGAGGCCTACGTGGCTACGTGGGTGGTCGACGACATCTCCGACAAAGTCCTCGAGCTCGTCCTGCTGCGCCTCCACTCCGATCCGCCGCCTGCCTCATCCGCGCCGCGTCCGTCTGCAAGCGCTAGCGCCGCGTCGTCGTCGTTGATGCCGCCGACGGTGCAGTGTCTTCCTCCGCCGCTTCCGTGTCCACCACGGGCCCGACCTCGTCGGCCAATACCACGCCGTTGGCGGCGCGGTCTCCCATGCGGCGTTCGTCCACGTCTCCAGGCCGGTTCTCGTCTACGGCTGCCGCCTCTCACTCGACTTCGTCCCGGACACCGCCTCCTGGACGATCGCCGAGACTCCGACAGCCGCTGCTGCCCTGATGGCCTCATCGTCTGCGAGCCACTTACGCG | |||||||||
gi|88259544|gb|CI363837.1|CI363837 CI363837 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone TCAGGTTATAAGACTTTCTGG EST sequence (targeted fragment marked with yellow): GCAACCAACAGCTTCTACTTATATATATAAATAAATAAATAGAGAGATTACGAATTCAAGAATCAAGCTGCACCTAAACACATTAGGGGAACTCTACCGCTAATCCAGAATATGCTAATCTATCCTGGTTAAGGACGATGTCGTAATGTGGTTACAAGGGCCATAATGCCATGCGAAGTGACATCCACAATGCCTCTTCCATTGAGATTTAATTTGTTTGTCGCAGTAGCGTAAGTAGTACTTCCTCCGTTTCATATTATAAGACTTTTTAGCATTGCCCATATTTATATATATGTTAATGAATATATATATATATATATATGTGTGCGCGCGCGCGCGCCTAGATTCATTAACATCTATATGAATGTGGGCAATGCTAGAAAGTTTTATAAACTGAAACGGAGGTAGTAGATTATAAGATAGGGTCACATTTCATTAGG | |||||||||
gi|86867857|gb|CI342754.1|CI342754 CI342754 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone TCAGGTTATAAGACTTTCTGG EST sequence (targeted fragment marked with yellow): AGATCAAAGTCAAAACTTCTTATAACCTGAAATTGAAACGGAGAGAGTACTATTCAGTATTCGTCCAAGGCACAAGCAAATGTCAGAACACCAAACGTGGCAAATTGCTGGTCATCCTAGACATCCAAGGATACAGAACTTATACTAGCACCATGTAGTCACAACACCTAGTAGATGACCTCCAGTCCTAGTACTCGTCCACTACATATACAATTTGTACTCTTTTTTTACCGGCAGTCTTGACCTCTTGGGAAAAAATGCAGGCAAAGCATTCTGTATTCTCTCCCTTTTTCCGCTCTCAAGAAAGGAAAAGCATGTGTAACTCATGTGGCTAACGCCATTCTGCTTGGGATTACTGAGCTCTGCAAGCTGTTGTCTGCAGATTTACCTTTTTTATCTGGTCTCTTCCTGCTACGCCACAATAAACGAATAGGGGTTCCTGGGAATCCAGCATCAGAGCGAAGCTTCTTTTCCATGTAAGGACGG | |||||||||
gi|86594088|gb|CI262316.1|CI262316 CI262316 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat TCAGGTTATAAGACTTTCTGG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTAAAGCTGAAACAGTTTGACTTTGACCAAAGTCAAAACGTATTATAACCTGAAACGGAGGTAGTATATATCATCACATATACCAGTACAAAAATGTACATGTGCACGCGTAGTCGCGTACACATCTATTAGTATATACATATCCCCTAATTTCTACCTCTAATATAGCATGATACGTACGTCCTACAAAACTTAACTAGAGCAAAGAAAAGATACAAACAAGATCCAAAACAAACAGGCAGGCCAGCATGCATGCAAAATCGGTGAAGAAACATCCACCGTCCATCTCCAGATGATCGATCCATCCGACGATCTCACGCTCATCTCCATCATATCCTCCTCCATGGCTGCTCCTGCTACTCGTCCATGTCTTCCTGTATCGGCTCCAGCTTGGACGGCGACGGCGGCGGCCGGCGGCCGCCGCCGCCCTCCTCCGCCTACACGGGCTCGACGTGCACGTCGCCCATGCTCATGATCTCC | |||||||||
gi|29622842|gb|CB627853.1|CB627853 OSIIEb03A23.f OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb03A23 5', mRNA sequence TCAGGTTATAAGACTTTCTGG EST sequence (targeted fragment marked with yellow): GTTCGTTTTGTGCATCCATCCAGAATTCGTTCCAGATCCAGCCAGCCAGCCATCTCAAGCTTCTCTCTTCTCTTGTTATTAAGAGCAAGCAAACAGTAGTCTAGCGAAGCGAGACTGCGAGAGCAGAGCATTGTTCTTCTTCTCTAGCTATTAGTGGTGGGGAATAATGGCTCCCGCCACCACCGCAGCAATGGCCCTCGCGCCGCCTCCTTCCCATCACCATCACCATCACCATGTCAAGCAGCTGCAGCTCCCTCCGTCTGTCTCCGTCTCCGTGCCCCTCCGCTCCGGTTTCCTTGGCCGCGCACTGCCTGCTGCTGCCCACCCACAGCCGCTGCTCGCCGCCGAGAGCCGCCGCAGCAGCGCCGTGTCCGTGCGGATGTCGTGGGACGGGCCCCTCTCCTCGGTCCGCCTCATTATGCAGGGCCGCAACGTCAAGGTTCTCCTCTCCTACTGCTACCACTAGTTTGCTTCCCTGGAATTTCCTTCGTTTCATATTATAAGGTTTTCTAGCATTACTCATATTCACATATATATATATATGATAATATTCTAGATTCATTATCATATATATGATTATAGGTAATGCTAGAAAATCTTATAACCTGAAACAGAGGGAGTGTATATAATTCGGTAATGGAACTAGAGTATTTGTTTTATTAATTGGACCTTTATGAAATACTAGTAGAATTCAACGAAACTACATTCTTCTTTATTGGTTATATTAGTAGTAATTTGCTTCACTAGAATTCTATTTTATACTAGAGAGATTAAAAATTATTACAAAACTAACTGTATACCCGTTGCAACGGAATAGTAATATGGACCTATTACTTATTACTAC | |||||||||
gi|33689322|gb|CF317561.1|CF317561 HD--07-E21.g1 OsHDAC1-overexpressing transgenic rice plasmid cDNA library (HD) Oryza sativa J TCAGGTTATAAGACTTTCTGG EST sequence (targeted fragment marked with yellow): TTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAGTCAAAGTAACCATAAATAAGGTTCCAGCTTGTCTGCATAAGTAATTAACTGACAAATCACATAGATGATAGATCCTTCCTCCGTTTCATATTATAAAACTTTTTACCATTGTCCTTTTTAATGAATCTAAACATATATTTGTCCTTAAATTCATTAACATCTATATGAATGGGAGCAATATTAAAAAGTCTTATATCCTGAAACGGAAAACGGGGGTAGTATATAGCTACAGATAGGTACAGTAAACAGTCGAATTAACCTAATAGACCACTAAACTATTTGCTCAATTGGAAACAAAATCAAATCCGACGGGGATAAAATCGGCGATTTGGCAGGGGAGCAGGAAAACCCCCTTGGCCCTGCACACGGGGACCCTGAAGTCGAGGCGGGTTGTCAACAACGGCGTAACCCTTGCAATGGCGGACCCCCCGTATGGTCCCCTGG | |||||||||
gi|86852544|gb|CI320469.1|CI320469 CI320469 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone TCAGGTTATAAGACTTTCTGG EST sequence (targeted fragment marked with yellow): AATAAATTTGTCCTGGCTTGAAAATGTTACTATTTTTTTCTACAAATTTGTCCTGACTTTGACCAAAAATCAAAAGGTTTTATAACCTGAAACAAAGGGAGTATATAATTTCTTAGTCTACAGGACTCAGCACATGGCAGCAAAAGTGTGTTCCTCGTTTAAATCATTGCCATTCAGTTGCTTCAAAAGCGTCTAAAGTAGATTTTGACAGAATGAACTGCACTCGAGAAGAATTCACCCAATTTCAGCCTGGCTAGGATGGTCTAGAAACCACCATCTTCTGGCTCTGGCGAAGACACACCATGTGGCTCAGTTTGGTCATCTTGTTCGTTTTTGTTTGATGGTGATGGATCATCCCCTTCACTCAAGTTTCCCT | |||||||||
gi|86497688|gb|CI140321.1|CI140321 CI140321 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) Oryza sativ TCAGGTTATAAGACTTTCTGG EST sequence (targeted fragment marked with yellow): GGGTAATGCTAAAAGTCTTATAACCTGAAACGGAGTGAGTATAAAATACTACCATGATGCGCGATATGGTATACTCTATAACAAGCCATAAACAAACGCGAGAAGAAGATCAAGGTTAATGGATCCGAGAATGAGCCGTCGCAACTTGCAAGAACCGGAGCACGGCGGCGCGGAGGAAGAAGACCGTCTTGTTGCTGCCGGCGACGGCGAGGCCTACGTGGCTACGTGGGTGGTCGACGACATCTCCGACAAAGTCCTCGAGCTCGTCCTGCTGCGCCTCCACTCCGATCCGGCGCCTGCCTCATCCGCGCCGCGTCCGTCTGCAAGCGCTAGCGCCGCGTCGTCGTCGTTGATGCCGCCGACGGTGCAGTGTCTTCCTCCGCCGCTTCCGTGTCCACCACGGGCCCGACCTCGTCGGCCAATACCACGCCGTTGGCGGCGCGGTCTCCCATGCGGCGTTCGTCCACGTCTCCAGGCCGGTTCTCGTCTACGGCTGCCGCCTCTCACTCGACTTCGTCCCGGACACCGCCTCCTGGACGATCGCCGAGACTCCGACAGGCGCTGCTGCCCTGATGGCCTCATCGTCTGCGAGCCACTTAC | |||||||||
gi|86853553|gb|CI329011.1|CI329011 CI329011 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone TCAGGTTATAAGACTTTCTGG EST sequence (targeted fragment marked with yellow): GTTACATATGACGATTTAGTTTTTTGTTTTGTTGGATATAGCAAATCAATGCGTTGCCTTTCACCAGAGCTTACCACGTTGTGTCGACGTGTGCGAACAAGTTACATACTCTCTCCGTTTCAGATTATAAGTTTTAGGTTATAAGACATTTTGATTTTAGTCAAAGTCAACTAATTATTTTAAGTTTGACTAAGTTTATAGACAACTATAGTAATATTTATAATAATAAATAGTTTCATCAAATCAAAATTGAATATATTTTTATAATAAATTTGTCTTGAGTTGAAACTGTTTTTAATTTTTTCTATAAATTTAGTCAAATTTTTGACCGAAGTCAAAACGTCTTACAACCTGAAACGGAGGGAGTAATTTTTAATTTCTACACAAAAGACTTTACTGCATTTA | |||||||||
gi|66923508|gb|CX110356.1|CX110356 EI048B09 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl TCAGGTTATAAGACTTTCTGG EST sequence (targeted fragment marked with yellow): AGAATGTGCAGAGAAGGAAGTCCATGAGAACACCGGTACCACAGCCGAGCGAGCATAGGGAGGACCTGTTCGAGATCGAGGACCTCCAGCTCGCGATCGGCGGCGGTGGCGGCGGCGGCGACAGCAAGGCCGGGACCAGTGACCCTCCTGAGCAAGCGGCGGTGGCGGTGGCGGCGGCTCAGTTCCCGCGGAGGTCGTCGCTGGGGAGGCCGATCAGGAGGGCCACGGAGAGGGTGGCCTCCTACAAGGAGATGCCTGTCAACATTAAGCTCAGGAGGTCCTAGCCTAACATCCTCTCCTAAGGCCAGAATGTCTTATAGTCTGATAGAGCTGCGTGCTGCAATGATTCTTTGCAGTTTAGTTAGTTAGTGTAGCATGTCATTTTGTTTGTTGGAATGGTTGTTGGATTGAATTCTTGATGTACCATGTGTGTATTCTGAGCTGTGACACATTTATTTACGGTCAAGAGGGGGTGCTTTGTGTGAAA | |||||||||
gi|58671305|gb|CK059991.1|CK059991 62875rsicek_7479.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gr TCAGGTTATAAGACTTTCTGG EST sequence (targeted fragment marked with yellow): CTGCAGGAATTCGGCACGAGGCTCATGGGGTTAACCGAATAAGGCCTAACTGGTTTATAGTGCCCAACAAGCAAATAGAGGTTTTGCAGCGTGTTCCAATGGGGCAACTGCTCATTTGCCTTTGTACTGTTACAGTCATGTTCAAGAGCAAGTTTTTCCTTTCTACTTCCTCCGTTTCATATAATCATATTATAAGACTTTATAGCATTACCCACATTCATATATGTGTTAATGAATCTAGACATATATGTGTGCGTAGATTCATTAACATCTATATGAATGTGGGCAATGCAAAGTCTTATAACCTGAAACGAACTGAGGTAGTACTTCTTTATGTTGGGACAGTCGTTTCATTATGTTTTCTACAAACGTTCAACAGACAACATTCTCTAGCTCGGTGGCCAAGTTATTTATGGGCAAAAGGTTGAAGAATATGAGGGTAAGGTTAACAGAGATAGCAGCAGAATGAACACACTATGGATTCACTCTAGATACCTACCCTAGGGATCTAGAACGGGAAGAGATCAGCAAGAGGGAAACAACATCAAAGATCAATAAGTCAGCTGTTGTTGGAAGAACAAAGAGGGTGAGTTAGCTGCAACCAGATGGCAACAAGAGTGATGGGAGATGATTTCTTGAATTCGTGATATTAGC | |||||||||
gi|87011612|gb|CI279521.1|CI279521 CI279521 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa TCAGGTTATAAGACTTTCTGG EST sequence (targeted fragment marked with yellow): TTACCTGATAAGTATAAGCATAAGAAAAAGATGAGGCCTGAAAAAAAAAAAAGGAGAAATAGACAGACGGTTGGTGGAGTGGAAGGGCCTCCAGGCTCCAGCAAATGACATTGTCAAATGACAAGATGGCAAATGCGATGGCTCTAGCTGTCGAGCGCATATATGGTAGTCCCTCCGTTTCAGGTTGTAAGACGTTTTGATTTTGGTTAAAGTCAAACTGATTTAAATTTGACTAAGTTTATAGAAAAATATAGTAATATTTGTAATACTAGTACCAAATTAGTTTTATTAAATCAATAATTGAATATATTTTCATAATAAATTTGTCTTGGGTTAAAAATGTTATTATTTTTTCTACAAACTTAGTTAAACTTGAAGCAGTTTGACTTTGACTAAAGTCAAAACGTCTTGTAACCTGAAACGGAGGTAATATTATCGATGAACAATGTTCTGATAGCTTTAGGGTACATTTCTTAGATACGGTTGGAGTAAAAGGGCCGGAACAAATACAGACATTAGGACAGAAATTATACTGCTTGGCACGCTCAAAGTAATCC | |||||||||
gi|88965162|gb|CI009198.1|CI009198 CI009198 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c TCAGGTTATAAGACTTTCTGG EST sequence (targeted fragment marked with yellow): TTATCGCGATATAATAAATAAATAATCCCCTAAAAGAGATGATGAAGAAAAGAAGGCCACTCCAACTAGAGCTAAATTTACAACCTCGCAAATACTTCATCCGTTTCATATTATAAGACTTTTTAGCATTACCCACATATATATGCCTAGATTCATTAACATATATATGAATGTGGATAATATTAGAAAGTCTTATAACCTGGAACGGAGGTAGTACGTATCAAAAGTATAGTAGATCGTGTGCTGTAAAATATAAACAAATCCAATCCAAACTAAACGATCACTTTGGTCGGACACGGAAACATGCATGCATTTGGTTGCCTCACGAGATCTCGACGTCGCACGGCACGCTGTTGAAGGACCGCGCCGCCGACGGCGACAAGCCGATGTTCACCGGCGAGCAGGTCACATTGACTTGGTAGTACCTGGAGGCGACGCCGCCGACTATGAACCGGACGCCCGTGGTCACCTCAACGTCCACGCTCAGCTCGCCGGCGGCGAGGTCGTGCTCCAGCTCCCAGGC | |||||||||
gi|89196177|gb|CI397179.1|CI397179 CI397179 Oryza sativa (japonica cultivar-group) seed Oryza sativa Japonica Group cDNA clone J TCAGGTTATAAGACTTTCTGG EST sequence (targeted fragment marked with yellow): ACAGTTAATATTCCATCCTTATAACTGTAAATATCTCAAACACATCTTAAAATATATGCCCACGCGAATGCGCGGACTACCTTCCTAGTTCATATGAACGTGGGTAATGCTAGAAAGTCTTATAACCTGAAACGGAGTGAGTATAAAATACTACCATGATGCACGATATGGTATACTCTATAACAAGCCATAAACAAACGCGAGAAGAAGATCAAGGTTAATGGATCCGAGAATGAGCCGTCGCAACTTGCAAGAACCGGAGCACGGCGGCGCGGAGGAAGAAGACCGTCTTGTTGCTGCCGGCGACGGCGAGGCCTACGTGGCTACGTGGGTGGTCGACGACATCTCCGACAAAGTCCTCGAGCTCGTCCTGCTGCGCCTCCACTCCGATCCGCCGCCTGCCTCATCCGCGCCGCGTCCGTCT | |||||||||
gi|218480571|gb|FG956281.1|FG956281 MA_PA64s_04092 Mature embryo cDNA Library of PA64s Oryza sativa Indica Group cDNA 5', mRNA s TCAGGTTATAAGACTTTCTGG EST sequence (targeted fragment marked with yellow): GGGCTGCAGGATTCGAATTCATAATAAATTTGTCTTGGGTTGAAAATGTTATTATTGTTTTCTACAAACTTAGTCAAACTTGAAGTAATTTGACTTTGACCAAAGTCAAAACATCTTATAACCTGAAACGGAGGTAGTAGTAGATTGACGCGTTGGCATTAGTAAAGGCAGACTCCAGAATTTGTTATTACTTGTTTTGCTTGTTTTATTCTTCACCATTATTAATTCACTGTTGTGAGCTTAATGTTTTGAAAACTGTGGGCATATATTCAATATAGGTCTCTCCAGCGGTCGGCATAATATCTCCGGGACAGACGGTAGAGGTCACTTTGCAGCACAGAGACCTGCATAGCCAACAAAACTATAATGGAACTTCATTGGATATTTTGCCTGGTGGAGCTACCCAACAAAAGGCAGCAACTGTATTTGCGAAAATAACTGGAGTATATTCAACAGTTGCAAAATATTACGAAATACATGTACAACACCAGAACTGCAGGAGCACATTGCCATCGAGAGGTTATAACTTAGGTGACCGGTTTTTTTAATTTTGAGTTTGGTATCAGG | |||||||||
gi|88243520|gb|CI243917.1|CI243917 CI243917 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat TCAGGTTATAAGACTTTCTGG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATTATATGCCCACGCGAAATGCGGCGGACTACCTTCCTANGTTCATATGACACGTGGGTAATGCTACGAAAGTCTTATAACCTGGAAACGGAGTGAGTATAAAATACTACCATGATGCACGATATGGTATACTCTATAACAAGCCATAAACAAACGCGAGAAGAAGATCAAGGTTAATGGATCCGAGAATGAGCCGTCGCAACTTGCAAGAACCGGAGCACGGCGGCGCGGAGGAAGAAGACCGTCTTGTTGCTGCCGGCGACGGCGAGGCCTACGTGGCTACGTGGGTGGTCGACGACATCTCCGACAAAGTCCTCGAGCTCGTCCTGCTGCGCCTCCACTCCGATCCGCCGCCTGCCTCATCCGCGCCGCGTCCGTCTGCAAGCGCTAGCGCCGCGTCGTCGTCGTTGATGCCGCCGACGGTGCAGTGTCTTCCTCCGCCGCTTCCGTGTCCACCACGGGCCCGACCTCGTCGGCCAATACCACGCCGTTGGCGGCGCGGTCTCCCATGCGGCGTTCGTCCACGTCTCCAGGCCGGTTCTCGTC | |||||||||
gi|29676857|gb|CB673132.1|CB673132 OSJNEe07I10.f OSJNEe Oryza sativa Japonica Group cDNA clone OSJNEe07I10 5', mRNA sequence TCAGGTTATAAGACTTTCTGG EST sequence (targeted fragment marked with yellow): ATTAACATATATATGAATCTTGGCAATGCTAGAAAGTCTTATAACCTAAAACGGAGGTAGTAATATATTTTCAAATATTAATGGTACAAGAGTAAAGGTAGTACTAACCTTATGTTCCAGTGTAAAGCATCATCTGCTGAGGATTTGAGGACTTCCTGTTTTATAAAAAGGGAGAAGACGTTCACATTACTTTTGATTCGATAATTATCAATCCAATGGAATGATGGATCATTCAAAATACTGTAACAGTGTAACTTCATTAGCCTTGATTCAAATTAGTAATCAGTAAATTATCGATTCCGAGTACCAACTAGAGCTAGGCCTCGCAGCCTCGTCGCCGCTCGCCGTTCCCATTGCTCCGCTTGGCAACATCGGCGTTGTGCTGCCTGCTGCCGTGAGGCGTAATGCTGTCGCTGCCGCCTGCTGTGCTGCACACACGCAGCAAGTCGCGTCTCTCCACGAGTGAACACTAAAAAGTAAACAGTTAAGACGGAGCGACATATGTCTTCCGCCTGGGCACCTAGCGTAGCTCCTGATCTAGGGCCAGGCTGCAGGCCTACTCCGAGGCGGGGGCCCCCAAAAATAGGGGGCCTTGTGCGGCCGCCGTGCTCGCACATGGCCTTAGACGGCCCTGACAAAGACATGTTAACTGGGTACATAAATGCACAAACAGTCATGCCGTCAACATCGATACTTGTCGAGTAGGCGGCTAATGCACAAACAGTCCAAGTACTACGGAAAA | |||||||||
gi|33677860|gb|CF306099.1|CF306099 HDA1--02-L03.g1 OsHDAC1-overexpressing transgenic rice lambda phage cDNA library I (HDA1) Ory TCAGGTTATAAGACTTTCTGG EST sequence (targeted fragment marked with yellow): GCACGAGGCTCAGTTCCCTGGCAAGAAGCAGAGAAGAGGATGATGGGAGGAAGAAGGACAAGAAAAAGAGAGAGAAAAGAAAAGCCTGACAAGTGGGCCCATAAACAGTACTGTCTCCATTTCTCGATTTCAAGTTATAAGACGNTTTGTCCAAAGTCAAAACGTCTTATAACATGAAACGGAGGGAGTTACCTTTAGTATTTTCTAGATTTAATCCAAATCCTATTATTTAGAAGCCCATATCTCCTAAACCATATATCCGATTCCAATGAAATTTGACCTAAATTCATCTAAATTCAAACTCTACATTTTGATATCAGACTTGCTATTTTAAGATTTATTTGAATTTCCTTAATTACCATTTGAATTTATATTTGATTCAAACTTATATTTGAATTCTTACTTTAAACTTATATTTGATTATCGCATATCTTCTTTCATTCCAAAATACCCATTAGCCCCTAAAGAGCCGCCGGTTGGAACTTTACGCCTTTCAT | |||||||||
gi|29668742|gb|CB665017.1|CB665017 OSJNEd11B14.r OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd11B14 3', mRNA sequence TCAGGTTATAAGACTTTCTGG EST sequence (targeted fragment marked with yellow): TGTTTTGTGATTTATTGGTTTGCAGCTCTGATGTACAGATGAGTAGCAGATGACTCGCCGTCTCTCCATCGCATATCAAGAATGCCTATTGCCTGTGATGCCTTCTATGTTTCGGTTCTGAGCAGCAGTAAGCCCATTTTTATCTGTTTTAATGCTATGTGTGTTCCTAATTTTTCTCTTCTATTTCATTAATTAATTAGTTTATCCATTGTGGGTTCTAAATAAAAAATATGTTAATTCCCTCTTGACTGACGCCATGAATCAGTGACCAGCGTTTATCTTGCAAACCCAGTTAAGTTTGCTTATCCTGAACATTTTTCTGATAGTACGTTGGTGAGCTAATCAGTTGGTCCTCTTTGTGTAGGTTGACCAAATAAGGAGGCAAGATTCTAAGGATTCAAACTCATTGCGTTTAGTTAAGCAACACACCAAGGTACACTGTGCCATAATTCTGCAGATTGAGCAGTCACGAATTGAGCATATGCTGATCGCTGTACGGATCATGGTACTTCCTCTATTTCATATTATAAGACTTTCTAGCATTGCCCCCATTCATATATATGTTAATAAATTTAGCCATATATATGTCCCTAGATTCATTAACATTTATATGAATGTGGCCAATGTTAGAAAGTCTTATACCCTGAAATGGAGGTAGTATAAAATAATGTGTAAACAACGCATGCCAATGGCGCCTACAGCCTAACTTGTGTTACTGTCATGTTCAGCAATAATCTATTAATCATGCGTTTCATATC | |||||||||
gi|88836751|gb|CI014752.1|CI014752 CI014752 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c TCAGGTTATAAGACTTTCTGG EST sequence (targeted fragment marked with yellow): TGCAAGCCAAAATATCAATATCTTATATTAGAGGACGGATGTAGTAATACTTTTCTCTACGAACTTAATCAAAATTAAAGCAGTTTGACTTTAACCATAGTCAAAATGTCTTATACCCTGAAACAATGGGAGTAGAGATTTTACAACTCTCAACTGTGTGATTGTGCTTAATTACCAAATTCACCCTTTTTTCAATGGAAACATGGTGAAGTAGGTCTGCATAACTGCGAGCACGACGGCGACTGCGGCGGCGACGAAGGAGATGGCCGACCACGGGCTGGCGAAGTAGTCGCGCCGGAGCGCCGCCGTCTTCCTCCGCCACCATGTCCCGCAGTAGCGGTCCACGTCCTTGTAGAGCCCGACGAAGGCGTGGCTGTCGTGGTTGACGGCGCCACAGTCGCCGAGGTGGTTGAA | |||||||||
gi|88221144|gb|CI221100.1|CI221100 CI221100 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft TCAGGTTATAAGACTTTCTGG EST sequence (targeted fragment marked with yellow): GAACAATGTTAGGAAGTTTTATAACTTGAAACGGAGGTGGTACATATTTAAACATTTATGTTCTTGATTTTGTTTTGCAACTCAAAACAATTTGAATTCCAATATGTACACACTACGTTGTCACCGAAACCTACGCCACGTCAGAGTGCGCCGCGCGCCGGAGGGGACGCCGGCCGGCCGCAGCGCACGGCACGGTCACCGGAGCGTCAGCGTCGAGAGGACCCCGACGAACGCCGCCGCGGCGACGCCGGAGCAGAAGAAGTCGACGGCGCCGTCTCGCCTCGCCTTCTTCACCTTCCTCGCCGCCCTCCCCCTCGCGAGCGCCTCGTACCGCCGCCACGCCGCCGCCTCCGCACCGCGGCCGTGCCTCGCGCCCTCCATGGCCGCCGCCACCGCGGCCAGCACGCCCCGCCCGCTGACGCCGCCGCCATCGCCGTCCTCCGCGCGCAGGCTCACCTCCCGGACGTGGCCGTGCCGGTCGTCGCATGTCACCGCCGCGTCGAGCGCGACGACGCCGCCGCCGAGCACCACGGTGAACCGCGCCACGGTCTCCCCG | |||||||||
gi|29668084|gb|CB664359.1|CB664359 OSJNEd10A12.r OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd10A12 3', mRNA sequence TCAGGTTATAAGACTTTCTGG EST sequence (targeted fragment marked with yellow): ACGGCGGACGCGGACGAGGGCGGCTGCGTCGGTCCCGGTGAACGCGGACGAGGGCGGCAGCGGCGGAGGTCGTGGACGAGGACGGCGGCGGTTGGCAGAGGGAGGCGGCAGTGGTCGAGGGCGCGGTGGACGCGGACGAGGTCGGCGGCGGTGACGGACGAGGGCGGTGGCAGCGGTTGAGGACGACGGCGGACGCGGACACGGACGAAGGCAGCAGCGTCGGTCACGGTGAACACAGACGAGGGCGGCAAGCCGGCAACGGCGGCGATCGTGGCATATGATGTGATAAAATGTTTTGTGATTTATTGGTTTGCAGCTCTGATGTACAGATGAGTAGCAGATGACTCGCCGTCTCTCCATCGCATATCAAGAATGCCTATTGCCTGTGATGCCTTCTATGTTTCGGTTCTGAGCAGCAGTTGAACAAATAAGGAGGCAAGATTCTAAGGATTCAAACTCATTGCGTTTAGTTAAGCAACACAACAAGGTACACTGTGCCATAATTTTGCAGATTGAGCAGTCACGAATTGAGCATATGCTGATCGCTGTACGGATCATGCTACTTCCTCTATTTCATATTATAAGACTTTCTAGCATTGCCCACATTCATATATATGTTAATAAATCTAGACATATATATGTACCTAGATTCATTAACATCTATATGAATGTGGACAATGTTAGAAAGTCTTATAACCTGAAATGGAGGTAGTATAAAATAATGTGTAAACAACGCATGCCAATGGCGCCTACAGCCTAACTTGTGTTAAGGTCATGTTCAGCAATAATCTATTAATCATGCGTTTCAAAAAG | |||||||||
gi|29635088|gb|CB640097.1|CB640097 OSJNEa13D23.f OSJNEa Oryza sativa Japonica Group cDNA clone OSJNEa13D23 5', mRNA sequence TCAGGTTATAAGACTTTCTGG |