| mature miRNA: TCATATTCATCATCATCGTGC species: Zingiber officinale database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|87098013|gb|DY364797.1|DY364797 ZO__Ee0003G15.r ZO__Ee Zingiber officinale cDNA clone ZO__Ee0003G15 3', mRNA sequence TCATATTCATCATCATCGTGC EST sequence (targeted fragment marked with yellow): AACATTCATTACCNGTAGCACAACCAACAGCAGCACCACCATCATCCCATAAATCATCCAAACATCACAATAATAAACATTCCATGAGTAAACAGAAAAAAAAAAAACGGGATGAAGAAGTTGATGAGGAAGATGAGGATGATGATTTTGATGAAGAACCACCATCCGATGAAGAAGAAGATGAAAAACCTGAACGTCCTAATGCTTCATGGACTATTCCACAATTGAAACAATATTTACGTGATAATGATGAACCTATACCATCAGGTGCTAAAAAAGCTGATTTATTACAAGCTGCATTGGATGTAGATCCAGAACCATCAGAGGCAGGGGAAGAAGATGATGATGATGATGAATTTGATTCAGAAGATTATGATGATTGAACTCAATCCAGTGTGCAAATCTGAACCACCACCACCGCCACCACACTGCATCATCAGCCACTCACACCCATTAGCTACAATATCCATTCTCTCCAAAGCTCACTCCATTGATCAAACCCGGCCCCGGCCCCTGCCCCGCTCTCATGCTTAATATCTCATGATTTGCCTTGCTTATTCGACGCCAGCACCCCCAGCCAGCCAGCCACCTCTCCCCCGCGATTGTTCCCTTGTTCCCTGTTTGTCCTTTGTTTCACTGTTTGTTTTTACTCTCCCTTTCTCTCGTCTCTCGCTTCAGTGGATTTTCCACTTTTCCCTTAATATCTCATCATTTTGTCTATTGGTTTTTTTTGTCATGTTTACAGTACTACGATGTATCATC | |||||||||
gi|87095878|gb|DY362662.1|DY362662 ZO__Ed0009E05.f ZO__Ed Zingiber officinale cDNA clone ZO__Ed0009E05 5', mRNA sequence TCATATTCATCATCATCGTGC EST sequence (targeted fragment marked with yellow): GCACCTTGGTCGCCGTCGCCGTCAACTCCCGCCGCGGTGGCACCGGGCGCCGCCCGCCTCGCACCGACGTGCAGTGCAAGAACCGCATCGACACGCTGAAGAAGAAGTACAAGGTGGCCAAGGGGCGGATCGGGTCCGGGTCGGGAGCCGCCGGCAGCCAGTGGCCGTTCTTCGCCCGCCTCGATGCGCTCGTTGGATCGTCGGCGTCTGCTCCCGCTGTGAAGAAGCGTGCTTTGTCGCCTCCGCTAGCCTTGCCGCTCCCGTACCAACGAAAGGGCGCGCCTTTGCCGGTTGCTGCGGCGGCCGCCGTCCGGCCGTTGAATTTGAAGGAGAAGCGTCCCACGGCGCCCTCCCTTTCTCTGGCGGACTCCATCTTCCGGAGGGCCGCTGCCGCTGCGGCTGCAGCGGAGGAGGACGATTATGAGGAATATGACGAGGACTTGGGATCGCCGTCTAGATCTCCGGACAGATCTGGATGGGGATGGAAGAGGCCTATAGGGGAGGGGGATGGAATCCGTGAGCTTGCGAAGGCGATGGAGAGGTTTTCCGAGATATATGAGAGGGTTGAGGTGGAGAAGCAGCAGCAGACGATGGAAATAGAGAAGAAGAGAATGGAGTTTGCCAAGGAGCTAGAGATCCGGCGGATGCAGATGCTTGTGGATTCACAGGTACAGCTTGTGAAGATTAAGCGCACCAAG | |||||||||
gi|87105366|gb|DY372150.1|DY372150 ZO__Ef0005L04.r ZO__Ef Zingiber officinale cDNA clone ZO__Ef0005L04 3', mRNA sequence TCATATTCATCATCATCGTGC EST sequence (targeted fragment marked with yellow): GCACGAGGCCTCGTGCCGAATTCGGCACGAGGGTGTGGCGAGCGGCGCGGCCTACGCCGCCCTCTGTTTCACCGGGGCGGCTTGCTTCTACTCCTACTGCTACCGCTCGAAGCTCCGCGGGCGGTACGACATCTCTGAGGGGCCGGCGCCGGACTTCCTCGTCCACTGCTGCTGCGAGGCCTGCGCTCTGTGCCAGGAGCACCGCGAGCTCAGGAGGAAGGGCTTCGACATGGGAATCGGGTGGAAGGCGAACGCGGAGAGGCAGCGCCGAGGGATGATGATGGATCCTGTGATGGGGGCTCCGGCGATGCGTGGCGGGATGACGAGATAACCATGGGCTCGTGCACGTGTTCTGCACGGAGTTGATGAATATGAATAAGTTTTTTTTTTCAGTCGCATCTTTCTTTCAAGCTTAATTACTGTCTTTGGGAGGCAGTTGCATTTGTAATGAATGATTACTTTTAAAAAAAATGTTAAACAATGTTATTTAATCTCATTGATATATGAA | |||||||||
gi|87095734|gb|DY362518.1|DY362518 ZO__Ed0009A18.r ZO__Ed Zingiber officinale cDNA clone ZO__Ed0009A18 3', mRNA sequence TCATATTCATCATCATCGTGC EST sequence (targeted fragment marked with yellow): CTGAAGCTGGTGAACTACAACCACATCATGCCCACCCGCTACACCCTAGATGTGGATCTGAAGGATATTGTCACCCTCGATGCTCTCCAGACTCGGGACAAGAAGGTCGCTGCTTCCAAGGAGACGAAGGCCCGCTTCGAGGAGCGATTCAAGACCGGAAAGAACAGGTGGTTCTTCACCAAGCTCAGGTTTTAATCTAAACAGCGCCTTTTGCTCCTACTTGTGTCTCCGATTGATGATTTGGACCTTGTCTACTGAGATTAGCGTGCTATTATGGCTTGTTAGTTTATCATTTGATCATCCGACTGCTGAATCGTTGCTATTCATAAATAGATTGACATTTAATTTGGTTTGTCGGCGATTGGGCGGATGGCCCGGCAGGAGGGCGTCGCAAGCCTGTGGCGCGGGTCCTCTCTGACAGTGAACCGAGCGATGATCGTAACGGCGTCGCAGCTGGCGACGTACGACCAGGCGAAGGAGTCGATCCTGCGGCGACGCGGGGCGAGCGCGGATGGGCTGGGGACGCACGTGGCGGCGAGCTTCGCGGCGGGGCTGGTGGCGTCGGTGGCGTCGAACCCAGTGGACGTTGTGAAGACGAGGGTGATGAATATGAAGGTGGAGAAGGGGGCGGCTCCGCCGTACGCCGGGGCTATGGACTGCGCCCTAAAGACGGTGAGGGCGGAGGGGCCGATGGCGCTCTACAAGGGCTTCATCCCCACCGTCTCCCGGCAGGGCCCCTTC | |||||||||
gi|87096636|gb|DY363420.1|DY363420 ZO__Ed0010N12.r ZO__Ed Zingiber officinale cDNA clone ZO__Ed0010N12 3', mRNA sequence TCATATTCATCATCATCGTGC EST sequence (targeted fragment marked with yellow): AGTGGGGGATATTCCAAATAGAATTTTCTCTGCTCCAGGTAAACCAAATTCAGAAACCATCACCTAGGCATGGACAAGGATCTGCAACTTCCAAGGTCATTCCCAACAGAGGACAACCAACAGTACTTCCTCAACATAATGGAGTACAGGATGAATATGAATGATTTGTTTCCGATCCAAGGTGTGGCTACTGAAGACTACAATACGCCTGGAGACCAAAAAGAACTGCGTGCTCCGACTCCTGCTGTTGCCACACCAAACCCAAATAAAGACGAAGCAGGAGAAGATGATGAGCCACCCCTCAATGAAGATGATGACGACGATGACGAGTTGGATGATGATGAAGATGATGATGAGCCAAATGCTCAGCATTTGGTTCTAGCTCTATTTGATAAGGTGACTCGGACAAAAAGCAGATGGAAGTGTACCCTTAAGAATGGCAAAATGCATCTCAATGTCAGGGATCTTCTTTTTAACAAGGCGAATGGCGAGTTTGAGTTCTGATTTTCTTCCTCTCGCTCTCTTGAATTTGTCAAGGGGAAGCTTGAACGAACTGTGGTGTTCTCAATTCTAAAAGGGGATTTGCGTTCTTGTAAAGACG | |||||||||
gi|87087292|gb|DY354079.1|DY354079 ZO__Ec0006J10.r ZO__Ec Zingiber officinale cDNA clone ZO__Ec0006J10 3', mRNA sequence TCATATTCATCATCATCGTGC EST sequence (targeted fragment marked with yellow): AAGAGTTTCACGAGGGAGGAGATCGACCGGTACTGGAGGATGAGAAGGATGGTCGAAGAGGATCACCTCCTCTTCGCTGAGAAAGCGGCGGCTAGGATCAGGGCCAAGGCTCTCAAGGAGGAAGACCAGAGGCGATTCGAGGAACTGCTGAAGGAGATGCTGGAAGAGAAGGAAGACGAGAAAGCCGATGCCGGAGAAAACAAGGAGCTGCAGATAGGAATCAAGGACTGGTGGACCAAAAGTAAGTATGCCTACCTGAACCAACCAGCGATCAAATCTATGGGCATGGGGGAGAAGAAGGCGTCCGGTCTCCACGAAGCCTGCTTCTACCTCTTTCCTCCGGTGGAACCCGCATGTGTCACGCCCTTCGGAGTTTATTAGGGCGGAGACAAGGGAGGAAATGCATGAATATATAGATAAATAAATAAATAAATAATCACTATGGTGATGAATGTGATGTGATGTGACGTGTGTGTTTAAAGTTAGAATTAAATTTGATGGTTGCTGCTAATTAATGGCACGCTTGCGCGGTTGCGCATTGATAACTAGTAAGTTTGGATTTTTGAAATGGTTGCATGTCAAAGGTAGGTGAAGATGTTGATAATCTGATGATTCAATAATTTTTGAATTGTGCCCCTCGGGGTACTATTGGTGCGATAGTAAATGTAAGAACGAGTTTTTTAAGTAGGAGGATTTAATTCTCCTACAACATAAATTAATATCGACGGAGTTCCCCTCGTGCCGAATTCGGCACGAG | |||||||||