mature miRNA: TCATCATCATCATCATCATCA species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|217051509|gb|GH218712.1|GH218712 HVSMEg0015B05f2 Hordeum vulgare pre-anthesis spike (white to yellow anther) cDNA library HVS TCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): CTCTATCCCGTCGTCTCTTTCCTCCCCACCTCGGCGCAGCAACAGAGGTTATGGCGATGGCGACGGCGGTGCGCTGGACCCAGACGGCGGGCGCGTCCGCGGCGGTGGCCGTCGCCGCGCAGAGGCTGCTGCTTCTCCTCGCTCTCGCGATGGAAGCTGTAAACAATGGAGCGGATATCTTCAATGATGGCCAGCAAGAAATTATCAAGCAATTTGGCAGAATCAAATCTGAGACTGTTCCGGAGAACAAGGATGCAGGGTCTGATGACGACGACGATGACGAAGATGAGGATGATGAAACTGGTGATGCTGATGACGATGATGCTGATGCTGGGGAGGACTTCTCTGGTGAAGAAGGCGAGGATGATGATGAGGACGATGACCCTGAGGCAAATGGCGATGATGCAGGCGCAGGGAGTGATGATGGTGATGACGATGATGACGATGATGATGGTGATGATGGCGAGGATGATGATGATGATGACGAGGATGAGGATGAAGA | |||||||||
gi|161476791|gb|EX584300.1|EX584300 HDP04O09T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP04O09, mRNA sequence TCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): CTAGTATCTAGGATTGGATTGAGCAGTCCATGTTCATCCTTCACAGAAACAACTACAAACCAAGTCCATCATGAGCAGCTGCTGCCTGCAACTTCTTAACAAAATATGTCAAACCTACATACATATCTTACTTATCAAGCCAAATTATATATTATACAACAGCAACAACAACAGCAGCAGCGACAAAGGGAGGAGAGGGGAGGCGAGGCTGGGCGATGATGATGATGATGATGATCCCTTTGATCGAAGCGAGACACTGCAAAACAAAAGGGATTTTAGTTTTACAAGATGCTGCATCCTTTCTGTGACTTCCTCTTCTTCCGCTTCTGCTTCGGAGGCTGGAGGACCACCTTGATCGCCGCATCAAACACCGCCTTGATGTTCTGCTGTGTTTTTGAGCTGCACTCGATGTAGGCAGTCGCGCCAATCACCTTCTTCAGCTCTTCACCCTGAGCAGTGGAAATAGGAACCGCCCCAGGGTGATCCACAAAAAACTGCTTGTCATCCCGCAGATCAAGCTTTGTTCCAACAAGAGTTATGGGCACGCCAGGAGCATAGTGCCGTAACTCTGGAATCCACTTCTTAGTGACATTCTCGTAGCTTGCTTTGCTGATGAGAGAAAAGGCGAGCAGG | |||||||||
gi|21160833|gb|BJ482373.1|BJ482373 BJ482373 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): GATCTTTCAGAAGGAGGAAACAGAAGCACATAAATTGAAAGGCACGTCCTCAGGGGATAACAGGGAGCTAATGAGAATCGGCCCTCGCCTTTTCGCATGCAAACTTCAGCGCCATCTGATGACAGTGATGATGGTGATCTCGGCCTGAATTATGGAAGGTTAACTCCTGGACTAAGAAACAAACTCAGGCAACATCCACAATACAAAATTCCTGGGGATAGCTTGCCACGTAAACAGTCCTTAGAAGGAGCTCCTGCCAGCATTGAAGAACCAGTGCATTTCAAAGAGAATGGCACATCATCTGAACAGACCGGTGATACTCATAAAGGTTCACGCACAGCCAAGAATTCTTTTGGTGCAAATTACCAGAGTGAACATCTTGATGGGAGACATACTGTTGGCAAACCTGTGGAATCAAGATCACCCATGACGAGGAATGACTTCTATTCAGGTGAATCAAGATCATCGTTGACGAGGAATGACTTCTATTNAGGTGAATCAAGATCATCCTTGACGAGGAATGACTTCTATTCAGGTGA | |||||||||
gi|59944930|gb|DN159036.1|DN159036 GNW004B18r GNW Hordeum vulgare cDNA clone GNW004B18 5-PRIME, mRNA sequence TCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): AAAACGACGAAATGAAACGCCAGTCTAATCTGACAAGGGAAGTGTTCAATGACATGCTGCTTTATTTTCCTCCATGAAACCCTTCCTTATTCTATCGCTCCACAGTCCTTACGCCAGCCAAAAGCAAATAAAAACCATTCATTCACTGGTACAGACGATGAATCTCTGACGCCGTTATCAGAACCAATGGAAATCAGGGGGGAAGTTCATTCACGACGATGATGATGATGAGTTCTTGAGGACCCACTCCCCC | |||||||||
gi|30085232|gb|CB883239.1|CB883239 HQ01J24w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ01J24 3-PRIME, mRNA sequence TCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): ACGCGTCCGCACGACTCNCGTAGATGGCAGCATCGGCGTCCCACATCGCGGCTTTGGCCGCCGTCCTCCTCTTCTTCCCTTCCCTCCTCGCCCCCGTCGCCGCGCAGCAGGGCAAGGCCAAGGCCTTCTGCATCAGTCAGTTCGCCATTGCCAGCCAGGCCTGCTCCATCCTGCCGCCCAGCCCTCCGGAGGACGACCGACACCATCACCACCACGACGATGACGATGATGACGATGACGACAACGATGATGACGACGGCGACGACGATCACCACGGTGGAGACAGTGACCGCCGCCTCCGTGGACGCCATGGCCACGCGGCGGTCATCAACATCTCGTCCCTTGGTCTGATGGCGGCAAACAGCAACAGCAGCGGCGTTGTCGTTGCAAGAAACGGCACCGGTCACCATGGCGGCAACCACACGCGCCGCGGGCACGGCCGTCTGCGTGGGCGTGGACGCGGGCGTGGGCGTGGACGTGGGCGCCGTGGTCGTGTGCGCGACGGTGATGAGGACCCCGACCATGACGACGACCATGAGGAGGACCCCGACCATGATGATGACCACGAGGAGGACCCCGATCACGACGACGACCATGAAGAAGACGACGACCATGACG | |||||||||
gi|18209552|gb|AV913775.1|AV913775 AV913775 K. Sato unpublished cDNA library, cv. Haruna Nijo germination shoots Hordeum vulgare TCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): ACGAGGAGNAAGTCCTAGTCGTAGCAGGAGCCGCAGCTACAGTCCTGTTGATGACAGGAAGGGTGGCAGAGACAGTTTGTCGCCCGCACGCAGAAGCACTAGTCGCTCTCCTCGCAAGACACCACCTCCTCGCGAGGGGTCTCCGGCTAGGCGCAATGATGACCAGTCTCCTGTTAGGCGCAGTGATGAGCGGTCTCCTGTTAGGCGCAATGATGAGCGGTCTCCTGTTAGGCGCAATGATGAGCGGTCTCCAGGCTCTCGTAGCCCTTCAACATGAGCTGAATGTCAAACAACTGAGGATCAATGGAACAGAGCTGCTCGTATCGGAGGCTGCTCAGTTGCTTTATCATGAACAATCTGCAGTTACAAATTAAAAATGTTGTGGTGCTTGATATCAGTGACTACTTCAAGCTACAGATGCTGCTTTGTGGATGTCTGGATACTTGTTAGAACTATGTGTACTACTTCACCTTCCCATTCAATCTTGTCTATTAGCACTAAGTATTACTATTTCCTTTCCAGTGTTGGGCACTTACTATAAATGGTAATTTGCACATTTCTAGTTACATGATGTGGTGAAGAGGTGCTGGTTGATAGAGGGTGAACACACAAGTTGCTTGCTGTTGCGGTTGATATTGTTTGTGCTGTATCCCTTAATGATGCTGATGCTGGTGATGGAGATGAGGATGGTGATGATGGTCGGTGTTGATGACGCTGATGATCATTTTGCTGCATG | |||||||||
gi|21967562|gb|BQ759090.1|BQ759090 EBma07_SQ003_B23_R maternal, 21 DPA, no treatment, cv Optic, EBma07 Hordeum vulgare subsp. vu TCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): CTCGAGAGCGAGCGTGCAGTGAGTAGATAGACTAGACCAACGACGACGGCAGGCATGGCGATGGCGATGGCGATGGCGATGAGGATTTGTGCACGGAGGCCGTGATGATGGTGATGGTGGTGACGCTGGCGGCGGGTGCGGTCTGCGTACGGTTTGCGAGCCGGCGCAGCTGGCGGTGTGCGCGTCGGCGATCCTGGGCGGGACGAAGCCGAGCGGCGAGTGCTGCGGGAACCTGCGGGCACAGCAGGGGTGCTTGTGCCAGTACGTCAAGGACCCCAACTACGGGCACTACGTGAGCAGCCCACACGCGCGCGACACCCTCAACTTGTGCGGCATACCC | |||||||||
gi|161476414|gb|EX584276.1|EX584276 HDP04O21w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP04O21, mRNA sequence TCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): GCCGGAAAGTTGACACAGGAATTGATGGACCTCAGAGGGGAAGAGTTTTCTTGCGGAAGGAATATGACAACTGATTTCGTGACATTTACCGTGAAGTATGGCTGCAGGAGTTACAAAGCGAGCAACACTGGATGGAGCAAATCAGAAGTTCCAGTGCTCCATGTCGAAAGTGATTCTGCTGATGATGATGGCCGTAGAACAGTAGTATCAGTTGATACCAGGTCATCTACACGATGGTCGCTCGCAATCAATGTGCAGGAAATTGACGACTTCACTATTGAGGTGGCTTCAGATAAGTTGGTTCAACTGGGTGGTAAGACTGAGGTCGGTGGATGGCATACAATCCAGTTTGCAGGCGGCAAGAACGCGCCAACGAAATTCCAGTTAGCCCTTTTCTAGTCAAGTAATGCAGCGCATGCATCTCCAAAGGAAGCAGAAGGCCCTCCCCTCCTGGTAAAACTAAGAACAGACGTGAATAGGGTCACGCCGATGGTCGAGACGGTTCTCGAGAAGCTTCCACGCTGGTGTGCGCCCTTCGGCAAGTCGACATCTCCTTACACGCTGGCGTTCCTGACCGCTCTTCCAGTCAATATTTAGGCGACCCGCATTGCGTTCCCCAACATTTTAGCCTTTTAGGGTACTACTAGGAGTTTGACATAGCGTTCATTTGTGCTGTATCTAGCTGTTCATTTTAGATTC | |||||||||
gi|21803542|gb|BQ662409.1|BQ662409 HS02D21u HS Hordeum vulgare subsp. vulgare cDNA clone HS02D21 3-PRIME, mRNA sequence TCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): GGGAGCAAGCCAAATAAATCGGTTATACTATTACAGCATGTCCAGATCATAATGTGGCAATGCCATGACCACATCAAATGTTGCAACTGCACACTGGAAAAAGTACATAACACTAAAAATATTCATGACAGATGCCAAATGCATGTCTAGGAGACATTCAGAGGGGCCTTCTCAAACTACAGTAGCTAATTTAAACAAGTTGACACCGCAACAATGAAATGACAATGCAATGTCTACCAGATGATGATGATATCCCAGAAAATCCACTTAGTGAAGATGATGAAGATGATGATCATGCCCC | |||||||||
gi|21948851|gb|BI777608.2|BI777608 EBro04_SQ001_M01_R root, 3 week, salt-stressed, cv Optic, EBro04 Hordeum vulgare subsp. vulga TCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): CGTCGTCTCTTTCCTCCCGAGCTCGGCGCAGCAACAGAGGTTATGGCGATGGCGACGGCGGTGCGCTGGACCCAGACGGCGGGCGCGTCCGCGGCGGTGGCCGTCGCCGCGCAGAGGCTGCTGCTTCTCCTCGCTCTCGCGATGGAAGCTGTAAACAATGGAGCGGATATCTTCAATGATGGCCAGCAAGAAATTATCAAGCAATTTGGCAGAATCAAATCTGAGACTGTTCCGGAGAACAAGGATGCAGGGTCTGATGACGACGACGATGACGAAGATGAGGATGATGAAACTGGTGATGCTGATGACGATGATGCTGATGCTGGGGAGGACTTCTCTGGTGAAGAAGGCGAGGATGATGATGAGGACGATGACCCTGAGGCAAATGGCGATGATGCAGGCGCAAGGAGTGATGATGGTGATGACGATGATGACGATGATGATGGTGATGATGGCGAGGATGATGATGATGATGA | |||||||||
gi|13190487|gb|BE602842.2|BE602842 HVSMEh0100B15f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009 (5 to 45 DAP) Hordeum vu TCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): GGGAAGNAAATTCTCTTGCGAGAGTTCGTGTCTAGTAGAAGAGTGGAGGAGATGAAGCCGGCGGTTGAAGGCGACGAGCGTGCGGCGGAGATCGCCCGCATCAAGGCCGCCGCGGCCGCCGCCAAAAAGGCGGCGGAAGAGGTGGTGGATGTGGACGATGAAGGTGAGGATGACGAGGAGGAGGCGGTTGACGGCGACGACGACGACGACGACGTCGACGACGATGGGGAAGAGGACGACGACGGCGGCGATGAAGAGGACGGTGGTGACGATGACGATGACGATGACGACGACGACGACGATGACGAGGAGGACGACGATGAAGTGGATGAGGAGGAGGACCCCGAGGAGGAGTTAGGAACTAAATATCTCGTGCAGCCACTTGGCCGTGCTGAAGATGAAGAGCATTCCAGTGACTTTGAGCCAGAAAAAAATGGTGATGGTGCTGATGATGAGGAGATTGAGGATGATGATGCTGAAGAAGATGGTGAGGATTCTGTTAAGGCT | |||||||||
gi|24327501|gb|CA031353.1|CA031353 HX09L11r HX Hordeum vulgare subsp. vulgare cDNA clone HX09L11 5-PRIME, mRNA sequence TCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): CAAAGGGTAGCCATTACCGCCATTGAATTGGGAGTTAGGGACGACGAACCGATGCAGTTTTTGACGGCCTCTCTTCTTCCTCCTCCTCCTCCTACTCCTACTCCATGATGCAGTGCAGGATCTGCCACGAGGAGGAGGACGAGAGCTCCGCGGCAATGGAGTCTCCCTGCGCGTGCTCCGGCTCTCTCATGTACGCGCACAGGGGATGCGTGCAGAGGTGGTGCGACGAGAAGGGGAGCACCCTCTGCGAGATTTGCCTTCAGGGTTTCGAGCCAGGCTACACAGTCCCTCCCAAGAAAGCCCCGGTGGTCGAGACGCTGGTTACTGTCAGCGATGATGAGGATGATGATGATGAGGAGGAGGAGCTGCACGGGCAGCTGGGCATGCACTACGCGGCGTCCGACACGCCGATGGACGGCCCGGATCCCACCGCTTGCTCGTGGTGCCGGCCATTGGCGATAACGTTCACCATCATCCTGCTGGTGTGGCATCTCATCGCCGTGGTGACCATCGAGGCCGCGGAGCACTGCGCGTTCAGCCTCCTCACGATGTACCTTCTTCGGGCCACGGGGATCTTGCTGCCGCTCTACGCCGTCATGAGGGTGGTCCGAATG | |||||||||
gi|13117446|gb|BF255014.2|BF255014 HVSMEf0005L19f Hordeum vulgare seedling root EST library HVcDNA0007 (Etiolated and unstressed TCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): CCCTTTCCCCCGACCAGGCCGCCGCCGTGACCTGAGAGCATTCGCACGATGTGGCGCCGCCTCCAAACCCTAGCCCCCGCCCTCCGCCGCGCTGCCGCCGCAGCCGGCTCGCCCCCCTCCCCGGCCATCGCCCGGGCCGCTCCCATCTCCACGGCGGTCGCGGCCTTCCGCCGCACTGCCCCTCTCCTCTCCGCGGACAAGCCGGCGGCGGCAGCGACGAGTGTGGAGGATGTCATGCCCATAGCCACGGGGTTGGAGCGCGAGGAGCTCGAGGCGGAGCTCCAGGGGAAGAAGCGCTTCGACATGGATCCCCCTGTCGGTCCCTTCGGTACCAAGGAGGCGCCAGCTGTCATTGAGTCCTATTTTGACAAGAGAATAGTAGGTTGCCCTGGTGATGAAGGAGAGGATGAGCATGATCTCGTATGGTTCTGGTTGAAAAAAGATGAGCCGCATGAATGCCCAGTCTGCTCACAATACTTTGTGCTTAAGGTCATTGGTGATGGTGGAAATCCAGATGGGCATGATGATGATGATGACGGTCATCACCACTAATGATGCCTCGTGGTTCTGAAAATAAGACATTTGTGAGGCATATGATTTCGCTTACGCGTNCTAAGCACCAGACTGCTCCACGGCATCCTTGTTTATGAATATACANTTGGGCCATCAAGCAGGTGGTAGTTNTCGCCTTAGGTTTTTTCGGAGAAACACAACTTTTGTCAGATTTGTCCAGTGCATGTCCTATGGAGCATCATCCAATAAGAAATGGCTGCGGGAGACTTTTACTTTTGCTACCGAGTGTCCATCCGGGGGGATGGGACCTGAACCGATTCATACAGCAGGAAATTGTGTTGGGCCAGTTGAAAAAAAAC | |||||||||
gi|24329897|gb|CA033021.1|CA033021 HX14O04r HX Hordeum vulgare subsp. vulgare cDNA clone HX14O04 5-PRIME, mRNA sequence TCATCATCATCATCATCATCA |