| mature miRNA: TCATCATCATCATCATCATCA species: Linum usitatissimum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|295646082|gb|GW867976.1|GW867976 59B01 Flax fiber enriched Lambda ZapII Library Linum usitatissimum cDNA 3', mRNA sequence TCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): GATCAGGCNNAACGACTNCCNNGAAGCTCACCGGATCATGANGAAAAATGCCGNGGACTNCNTCAGACTTTACATGCCNATCTCNGTAGAACTTGCACATATTGCATATTACTTGAGCATACTTCCCTTTCGACTNCCTCAACTGAAGAAGGTCAGCATCCGTTAGTTTTACTTGAGTTGTAATATTTATCCCCACGACAACANTGTCTGCTCCAGATGTAAACACGACATCTGCTGCTTCTGGATCTCCATAAATATTTGCTTCAGCAGCAGGGTTAACATTTCCCAAAGCAAAGAAGGCTCCGCCAAGAACTACAATCTTTTTTACTTTGCTTGCAAATGAGGAGTCCCTTTTGATTGCCAAGGCCACATTTGTCAATGGCCCAAGTGCAAGAACGGATACTTCACCAGGGAACTCTAACACCTTGTCAACTAAAAATTCAGCAGCAGTCTTTGGACTTTTCTCTGCGTTTGGTGGAGACAAGTATGTGTTTCCCAGACCATCAGAGCCATGGACAAAGTCAGCAACACGGGGCTTCCCTCCCTTTAGAGGTTCATGAGAGCCCTCTGCAACTGGAATATCAGGACGCCCAGCAATCTCACACAGAAGCAAAGCATTACGAGTGGCATCTTCTGTGGCAACATTACCAAATACTGTTGTGAAGCCTAAGATTTCCACTTCAGGAGTTTGAAATGCCATTAAAATTGCCATGCTATCATCGATCCCAGGGTCTGTATCGATAATAAGCTTCCCAGGCTTAGCAGAAGAAGCAAATAGGCCGTCGGGAACTACACCATTGGCTTGCGCCATTCCGTGATCAATTCTTGGGGATCTCAGACCAGAAACCGGAACGAGAATCAGAGAAACGTGAAGAAATTGCTTTAACAACTGGCTGGACCGGCGAGGGGGAGACAACGGCAACCGCGACGACGAAGTAACCGCGGCTGCGACGTCGATGAGGATGATGATGATGATTAAGGTGAAATTGAGGAGCTGGGC | |||||||||
gi|295645932|gb|GW868383.1|GW868383 63E06 Flax fiber enriched Lambda ZapII Library Linum usitatissimum cDNA 3', mRNA sequence TCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): GACTTTCATCNTTTCTCAAGCTGGANCCTCTGATCGACCCGCTTCANNAAGTANCCGTACATNACCGAAGCTGCGTATNCCNGACCGACTCGAAGCTTGCTTATTTGTGCCACGGCTGATGGNTCTCCTANCCTGTTCCCTAGTATAAGAGTGAGATGGTTCTGGATCATCTCGAATGCTTCAGGGGAGTGAAGCTGTTCAAGCTTCTTCTCTTCTTTGCTTGCCCATGTATCAATCCGGCTAGATTGTTCCGACGGGGCCAATGTAGGTATCAATGAGACATTGGCATCCATGAACTTCTGCACAATCAAAGCGTAGAGAATCTCTTCCAATGTCTTTCTCCTTTCGTTAGCCTTCACTTCAGCAATTCTCCTGTAGAGAACCAAGTCGGTTCCTGGAGCAGCAGGCTCGTCGTTAGGCTTCTCCCCCTCTCGATCGGTTTGGAGCTGCTCGAGTTGCTGCTCGACAGCAGCCGGTACAAGGTGGGGATGGCTGACTAAGATCTGAGAGAGAAACTGTCCCACTGGTGACTCCAGCTTAAGGGGAGCAATTGATGAAATGGAGCCATCCGAATTCGGAGATCGTGATGACGATGATGATGATGATGAAGCCCTAACGACAACTGGAGATCTTCTACTTCTCAAAGACACATTTCTACGTCCAGACTTCAAGCCTAATCCAGTGGAGAATTGCTTGATTGGGGACGACGAAACCGGCAAGAGATCCGGCCCACTTGCAGAGACGAATCCTAATCTACTAACGGGAACCGACTGCCTCGAGTACACAAGGCTAGCGGATTGGACAACAGAAGCTGCTTCCATCTTCCAACAGAGAGCTTCTTCGATTACCGCAGCAGCTTACAATCGGAGAAGATTATCGGTCTACGACGGCGGCTGGAAAAAAAACAGAGGCGTGTATTGGTTTGAGAAGAAGAAAGTCGGAAGCAAGG | |||||||||
gi|295645932|gb|GW868383.1|GW868383 63E06 Flax fiber enriched Lambda ZapII Library Linum usitatissimum cDNA 3', mRNA sequence TCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): GACTTTCATCNTTTCTCAAGCTGGANCCTCTGATCGACCCGCTTCANNAAGTANCCGTACATNACCGAAGCTGCGTATNCCNGACCGACTCGAAGCTTGCTTATTTGTGCCACGGCTGATGGNTCTCCTANCCTGTTCCCTAGTATAAGAGTGAGATGGTTCTGGATCATCTCGAATGCTTCAGGGGAGTGAAGCTGTTCAAGCTTCTTCTCTTCTTTGCTTGCCCATGTATCAATCCGGCTAGATTGTTCCGACGGGGCCAATGTAGGTATCAATGAGACATTGGCATCCATGAACTTCTGCACAATCAAAGCGTAGAGAATCTCTTCCAATGTCTTTCTCCTTTCGTTAGCCTTCACTTCAGCAATTCTCCTGTAGAGAACCAAGTCGGTTCCTGGAGCAGCAGGCTCGTCGTTAGGCTTCTCCCCCTCTCGATCGGTTTGGAGCTGCTCGAGTTGCTGCTCGACAGCAGCCGGTACAAGGTGGGGATGGCTGACTAAGATCTGAGAGAGAAACTGTCCCACTGGTGACTCCAGCTTAAGGGGAGCAATTGATGAAATGGAGCCATCCGAATTCGGAGATCGTGATGACGATGATGATGATGATGAAGCCCTAACGACAACTGGAGATCTTCTACTTCTCAAAGACACATTTCTACGTCCAGACTTCAAGCCTAATCCAGTGGAGAATTGCTTGATTGGGGACGACGAAACCGGCAAGAGATCCGGCCCACTTGCAGAGACGAATCCTAATCTACTAACGGGAACCGACTGCCTCGAGTACACAAGGCTAGCGGATTGGACAACAGAAGCTGCTTCCATCTTCCAACAGAGAGCTTCTTCGATTACCGCAGCAGCTTACAATCGGAGAAGATTATCGGTCTACGACGGCGGCTGGAAAAAAAACAGAGGCGTGTATTGGTTTGAGAAGAAGAAAGTCGGAAGCAAGG | |||||||||
gi|295645932|gb|GW868383.1|GW868383 63E06 Flax fiber enriched Lambda ZapII Library Linum usitatissimum cDNA 3', mRNA sequence TCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): GACTTTCATCNTTTCTCAAGCTGGANCCTCTGATCGACCCGCTTCANNAAGTANCCGTACATNACCGAAGCTGCGTATNCCNGACCGACTCGAAGCTTGCTTATTTGTGCCACGGCTGATGGNTCTCCTANCCTGTTCCCTAGTATAAGAGTGAGATGGTTCTGGATCATCTCGAATGCTTCAGGGGAGTGAAGCTGTTCAAGCTTCTTCTCTTCTTTGCTTGCCCATGTATCAATCCGGCTAGATTGTTCCGACGGGGCCAATGTAGGTATCAATGAGACATTGGCATCCATGAACTTCTGCACAATCAAAGCGTAGAGAATCTCTTCCAATGTCTTTCTCCTTTCGTTAGCCTTCACTTCAGCAATTCTCCTGTAGAGAACCAAGTCGGTTCCTGGAGCAGCAGGCTCGTCGTTAGGCTTCTCCCCCTCTCGATCGGTTTGGAGCTGCTCGAGTTGCTGCTCGACAGCAGCCGGTACAAGGTGGGGATGGCTGACTAAGATCTGAGAGAGAAACTGTCCCACTGGTGACTCCAGCTTAAGGGGAGCAATTGATGAAATGGAGCCATCCGAATTCGGAGATCGTGATGACGATGATGATGATGATGAAGCCCTAACGACAACTGGAGATCTTCTACTTCTCAAAGACACATTTCTACGTCCAGACTTCAAGCCTAATCCAGTGGAGAATTGCTTGATTGGGGACGACGAAACCGGCAAGAGATCCGGCCCACTTGCAGAGACGAATCCTAATCTACTAACGGGAACCGACTGCCTCGAGTACACAAGGCTAGCGGATTGGACAACAGAAGCTGCTTCCATCTTCCAACAGAGAGCTTCTTCGATTACCGCAGCAGCTTACAATCGGAGAAGATTATCGGTCTACGACGGCGGCTGGAAAAAAAACAGAGGCGTGTATTGGTTTGAGAAGAAGAAAGTCGGAAGCAAGG | |||||||||
gi|295645912|gb|GW868363.1|GW868363 63C09 Flax fiber enriched Lambda ZapII Library Linum usitatissimum cDNA 3', mRNA sequence TCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): GGTAGNNGNATTTGANGGCGGCNGATATTATGCTTANGTTGTNGTTNTTCTTTCTGTGGTGATGGANCTGTTTGCTGNCCATAGGAACANGTGTGTGTTCCTCTGTATGTCACCTCAAAGATTGTCGNATCTTCATCTGACCTCTGGACTTGCTTTATTGCCCAGCAGTTTTGAGTGNTTCTGTATGTGCACCTGTAATAGCTTCTAGGATATTTGGCTCCAAGTATGTCTTTCTGACCATACTTCCTCCAGCTAAAGCCATCATCAATAGGACCTTCCAATCCATTATCAGAGCTCATTCTAACTTGATCAGTCCATCTAGGCATTGCCTTTCTTTTCTTAGAGGCATCAATTGGTACTTGATAACTATCCTTGCTTCCATCAAAATCCTCACTCCTAGGACTCCCATTCCTGGACAATGGAGATCCAGGAACTCCAGCAGAACCAGTAGCTGCTACTACTGCTGCTGCTGTTGTGCCAGTAACAACAGCTTGCAGAGTTTGCTCCATTGATGATGATGATGATGATGACCCATTATTCTTCCAGTTGAGAATAAATAGAGCCTTCTCATAAGAAGACAATATCCTCTGAACTAGACTGTCTGCAACTTCAACAGCAGATGCCCCCTTGAGATGACAGCTCAGCTGTTTCGCAACTTCCATCCCTTGGATTAGCTCATTCACCACTGTCCTCTGCTCCCAGCTCAATTCTGATCTCTCCATTGGTATACAAATTGGTAATCCAAAACAAACACGATTCTGTTCGCCCTTGAACGATGATCGAGACAGCTTGGACCAATTAGTTCACTAGAAGAAGGAAAAGCTTCAAACTTTAGCCTGCTATAGCTATTGACAGCAGAGAATTGAGAGTGAATAGGCAATATCATGGATTGGGAAGCAAAACCCAGAGGAGAAAAGGTGTTGTTTGGGAGGAAAGTTTGAACCTGCAGCCCGGGGGATCCACTAGTTCTAGAGCGGCCGNNNC | |||||||||
gi|295646048|gb|GW868499.1|GW868499 64G06 Flax fiber enriched Lambda ZapII Library Linum usitatissimum cDNA 3', mRNA sequence TCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): CCNNNNAGTTTTTTTTTTTTTTTTTTTANNNAAANNNTAATCATAGAANCCTCAAAGTATATTAGAATATAATTTCACATGTATNNAACTCATTCAAGGAAGAAGTGAAATGATANGAAAAAACTANTGGAGCCGCTGAGATGGGCNNTCAATTTGCTGATGCTGATGCGGACCAGCCACACCATTATGATTCAAGCCATCTGATGCTGCCAAACCCAACTGATGATGCTGATGCTGATTCTGATGCTGATGATGGTTAGGAGTAGGAGTAGGAGGCATCACATTCGTCCCTATCCCTTGATGCTGTGCATAGAACATCCGATGTTGCTGATCATTCGGGGGCTGTGGCACGCCGTATTCATATCCGCCACCATTTGCAGCATCCTGATGCTGCAAATGGGAGTAGCCCGGATACTGGTGGGGATGGAATTGCTGGTGGTGATGGAGATGGTAGAGCTGCTGCTGGTGGTTTGTGCTGTACACAATTGATCCCGTTTCTGCTGCCTTCCCACCAGAAGGACTAGGAGGAACATGTTTAGTTGGGTAAATTGGTGGCTGATGTTGTGGCATTGGCATCGGCATTACATAAACAGCCTGAGCAGGATACGGTTGTTGATGGTGATGATGATTCGGGGACGGCGGTGGAAGCGCGTAGTAAGACGACGACGAGATCATCTGCTGTCCTCCTCCTGGACCAGGTTTTAAGTAATGCACCTGTTGTTGATGCTGATGATGTTGATCAAAGAAAGGGTCTTGAATCTGGATTGGAATATGGGTTGATGGGGTTTGACTAGCCGTTACAGTATTATTACTAATCACATTACTACTAGGATGATCGCCATTGTTGTTGGTCTCAATTTGCTTCACAAGTTCACCGGAGTTGTTGTGACCGTTATTCTTTGCCAGGGACGATGAAGCCACCATTGACAATGCAATGCTGCTACTCTNTC | |||||||||
gi|295645932|gb|GW868383.1|GW868383 63E06 Flax fiber enriched Lambda ZapII Library Linum usitatissimum cDNA 3', mRNA sequence TCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): GACTTTCATCNTTTCTCAAGCTGGANCCTCTGATCGACCCGCTTCANNAAGTANCCGTACATNACCGAAGCTGCGTATNCCNGACCGACTCGAAGCTTGCTTATTTGTGCCACGGCTGATGGNTCTCCTANCCTGTTCCCTAGTATAAGAGTGAGATGGTTCTGGATCATCTCGAATGCTTCAGGGGAGTGAAGCTGTTCAAGCTTCTTCTCTTCTTTGCTTGCCCATGTATCAATCCGGCTAGATTGTTCCGACGGGGCCAATGTAGGTATCAATGAGACATTGGCATCCATGAACTTCTGCACAATCAAAGCGTAGAGAATCTCTTCCAATGTCTTTCTCCTTTCGTTAGCCTTCACTTCAGCAATTCTCCTGTAGAGAACCAAGTCGGTTCCTGGAGCAGCAGGCTCGTCGTTAGGCTTCTCCCCCTCTCGATCGGTTTGGAGCTGCTCGAGTTGCTGCTCGACAGCAGCCGGTACAAGGTGGGGATGGCTGACTAAGATCTGAGAGAGAAACTGTCCCACTGGTGACTCCAGCTTAAGGGGAGCAATTGATGAAATGGAGCCATCCGAATTCGGAGATCGTGATGACGATGATGATGATGATGAAGCCCTAACGACAACTGGAGATCTTCTACTTCTCAAAGACACATTTCTACGTCCAGACTTCAAGCCTAATCCAGTGGAGAATTGCTTGATTGGGGACGACGAAACCGGCAAGAGATCCGGCCCACTTGCAGAGACGAATCCTAATCTACTAACGGGAACCGACTGCCTCGAGTACACAAGGCTAGCGGATTGGACAACAGAAGCTGCTTCCATCTTCCAACAGAGAGCTTCTTCGATTACCGCAGCAGCTTACAATCGGAGAAGATTATCGGTCTACGACGGCGGCTGGAAAAAAAACAGAGGCGTGTATTGGTTTGAGAAGAAGAAAGTCGGAAGCAAGG | |||||||||
gi|295645932|gb|GW868383.1|GW868383 63E06 Flax fiber enriched Lambda ZapII Library Linum usitatissimum cDNA 3', mRNA sequence TCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): GACTTTCATCNTTTCTCAAGCTGGANCCTCTGATCGACCCGCTTCANNAAGTANCCGTACATNACCGAAGCTGCGTATNCCNGACCGACTCGAAGCTTGCTTATTTGTGCCACGGCTGATGGNTCTCCTANCCTGTTCCCTAGTATAAGAGTGAGATGGTTCTGGATCATCTCGAATGCTTCAGGGGAGTGAAGCTGTTCAAGCTTCTTCTCTTCTTTGCTTGCCCATGTATCAATCCGGCTAGATTGTTCCGACGGGGCCAATGTAGGTATCAATGAGACATTGGCATCCATGAACTTCTGCACAATCAAAGCGTAGAGAATCTCTTCCAATGTCTTTCTCCTTTCGTTAGCCTTCACTTCAGCAATTCTCCTGTAGAGAACCAAGTCGGTTCCTGGAGCAGCAGGCTCGTCGTTAGGCTTCTCCCCCTCTCGATCGGTTTGGAGCTGCTCGAGTTGCTGCTCGACAGCAGCCGGTACAAGGTGGGGATGGCTGACTAAGATCTGAGAGAGAAACTGTCCCACTGGTGACTCCAGCTTAAGGGGAGCAATTGATGAAATGGAGCCATCCGAATTCGGAGATCGTGATGACGATGATGATGATGATGAAGCCCTAACGACAACTGGAGATCTTCTACTTCTCAAAGACACATTTCTACGTCCAGACTTCAAGCCTAATCCAGTGGAGAATTGCTTGATTGGGGACGACGAAACCGGCAAGAGATCCGGCCCACTTGCAGAGACGAATCCTAATCTACTAACGGGAACCGACTGCCTCGAGTACACAAGGCTAGCGGATTGGACAACAGAAGCTGCTTCCATCTTCCAACAGAGAGCTTCTTCGATTACCGCAGCAGCTTACAATCGGAGAAGATTATCGGTCTACGACGGCGGCTGGAAAAAAAACAGAGGCGTGTATTGGTTTGAGAAGAAGAAAGTCGGAAGCAAGG | |||||||||
gi|295646048|gb|GW868499.1|GW868499 64G06 Flax fiber enriched Lambda ZapII Library Linum usitatissimum cDNA 3', mRNA sequence TCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): CCNNNNAGTTTTTTTTTTTTTTTTTTTANNNAAANNNTAATCATAGAANCCTCAAAGTATATTAGAATATAATTTCACATGTATNNAACTCATTCAAGGAAGAAGTGAAATGATANGAAAAAACTANTGGAGCCGCTGAGATGGGCNNTCAATTTGCTGATGCTGATGCGGACCAGCCACACCATTATGATTCAAGCCATCTGATGCTGCCAAACCCAACTGATGATGCTGATGCTGATTCTGATGCTGATGATGGTTAGGAGTAGGAGTAGGAGGCATCACATTCGTCCCTATCCCTTGATGCTGTGCATAGAACATCCGATGTTGCTGATCATTCGGGGGCTGTGGCACGCCGTATTCATATCCGCCACCATTTGCAGCATCCTGATGCTGCAAATGGGAGTAGCCCGGATACTGGTGGGGATGGAATTGCTGGTGGTGATGGAGATGGTAGAGCTGCTGCTGGTGGTTTGTGCTGTACACAATTGATCCCGTTTCTGCTGCCTTCCCACCAGAAGGACTAGGAGGAACATGTTTAGTTGGGTAAATTGGTGGCTGATGTTGTGGCATTGGCATCGGCATTACATAAACAGCCTGAGCAGGATACGGTTGTTGATGGTGATGATGATTCGGGGACGGCGGTGGAAGCGCGTAGTAAGACGACGACGAGATCATCTGCTGTCCTCCTCCTGGACCAGGTTTTAAGTAATGCACCTGTTGTTGATGCTGATGATGTTGATCAAAGAAAGGGTCTTGAATCTGGATTGGAATATGGGTTGATGGGGTTTGACTAGCCGTTACAGTATTATTACTAATCACATTACTACTAGGATGATCGCCATTGTTGTTGGTCTCAATTTGCTTCACAAGTTCACCGGAGTTGTTGTGACCGTTATTCTTTGCCAGGGACGATGAAGCCACCATTGACAATGCAATGCTGCTACTCTNTC | |||||||||
gi|295645912|gb|GW868363.1|GW868363 63C09 Flax fiber enriched Lambda ZapII Library Linum usitatissimum cDNA 3', mRNA sequence TCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): GGTAGNNGNATTTGANGGCGGCNGATATTATGCTTANGTTGTNGTTNTTCTTTCTGTGGTGATGGANCTGTTTGCTGNCCATAGGAACANGTGTGTGTTCCTCTGTATGTCACCTCAAAGATTGTCGNATCTTCATCTGACCTCTGGACTTGCTTTATTGCCCAGCAGTTTTGAGTGNTTCTGTATGTGCACCTGTAATAGCTTCTAGGATATTTGGCTCCAAGTATGTCTTTCTGACCATACTTCCTCCAGCTAAAGCCATCATCAATAGGACCTTCCAATCCATTATCAGAGCTCATTCTAACTTGATCAGTCCATCTAGGCATTGCCTTTCTTTTCTTAGAGGCATCAATTGGTACTTGATAACTATCCTTGCTTCCATCAAAATCCTCACTCCTAGGACTCCCATTCCTGGACAATGGAGATCCAGGAACTCCAGCAGAACCAGTAGCTGCTACTACTGCTGCTGCTGTTGTGCCAGTAACAACAGCTTGCAGAGTTTGCTCCATTGATGATGATGATGATGATGACCCATTATTCTTCCAGTTGAGAATAAATAGAGCCTTCTCATAAGAAGACAATATCCTCTGAACTAGACTGTCTGCAACTTCAACAGCAGATGCCCCCTTGAGATGACAGCTCAGCTGTTTCGCAACTTCCATCCCTTGGATTAGCTCATTCACCACTGTCCTCTGCTCCCAGCTCAATTCTGATCTCTCCATTGGTATACAAATTGGTAATCCAAAACAAACACGATTCTGTTCGCCCTTGAACGATGATCGAGACAGCTTGGACCAATTAGTTCACTAGAAGAAGGAAAAGCTTCAAACTTTAGCCTGCTATAGCTATTGACAGCAGAGAATTGAGAGTGAATAGGCAATATCATGGATTGGGAAGCAAAACCCAGAGGAGAAAAGGTGTTGTTTGGGAGGAAAGTTTGAACCTGCAGCCCGGGGGATCCACTAGTTCTAGAGCGGCCGNNNC | |||||||||