| mature miRNA: TCATCATCATCATCATCCTCA species: Physcomitrella patens database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|208396232|gb|DC924026.1|DC924026 DC924026 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp TCATCATCATCATCATCCTCA EST sequence (targeted fragment marked with yellow): TTAGAGAAGNCTGTCGGAACGGAGATCGAGTGGAATTCTGNCAAGAACTTTAACGCAGAAGGTGATGAAGAAGAAAGCGAAAAAAGGATCAAAGAACACAAAACCTGTGACGAAGACTGAGAATTGTGATAGTTTTTTCAACTTCTTTAATCCTCCTCAAGTACCTGAGGATGATCAAGACATTGATCAAGAGATGGTCGAGCAACTTCAAGACTTGTTGGAGCAAGACTACGACGTAGGGTCCACGATTAGGGACAAGATTATTCCTCATGCTGTTTCCTGGTTTACGGGAGAGGCTTTGCAAGGTGAGGATTTTGAAGATGATGACGAAGAAGGCGACGACGACGACGACGACGACGAAGATGACTATGATGAAGATGAAGACGATGAAGAGGAAGATGAAGACGAGGAAGATGATGATGAAGAAGAAGTGCGAGGCCGCAAGCGTGTAGTTCCCACACGGAAGGGTGGTGCATCCAAGGCGTCTGATGGACAGCAACAAAGTGGCGAGCAGCCTCCGGAGTGCAAACAGCAGTAACCTTATGGGAAGGACGGATAATTTATTTTGAGGTTGAGATAGTACATTAAAAATTGTGGCAGCATTTTGAGGGACAAGATCCCAACTGAATCTTTAGTTGGCGAGGCACCTGCAATTATTACCTAGTTCGAGTGCTGAGGTTTTCTCGTTCATCCTCGAGGATGGTTCGTTAAATCTATTTGTTCGTGATTAGTGGATAGGGCATGAAATATTGCAGTGAAATCGGATT | |||||||||
gi|208384173|gb|DC919673.1|DC919673 DC919673 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp TCATCATCATCATCATCCTCA EST sequence (targeted fragment marked with yellow): TTTCCTGGTTTNCGGGAGAGGCTTTGCAAGCTGAGGATTTTGAAGATGATGACGAAGAAGGCGNCGACGACGCACGACGACGACCGAAGATGCACTATGATGAAGATGAAGACGNTGAAGAGGAAGATGNAGACGAGGAAGATGATGANGAAGAAGAAGTGCGANGCCGCAAGCGTGTAGTTCCCACACGGAAGGGTGGTGCATCCAANGCGTCATGNTGGACAGCATCAAANCTGGCGAGCAGCCTCCGGAGTGCAAACANCAGTAACCTTATNGGAAGGACGGCTAATTTATTTNGAGGTTGAGATAGTACATTAAAAATTGTGGCAGCATTCGAGNGACAAGATCCCAACTGAATCTTTAGTTGGCGNGGCACCTGCAATTATTACCTAGTNACGAGTGCTGAGGTTTTCTCATTCATCCTCGAGGATTGGTTCGTTNAATNTATTTGTTCGTNACTAGTGGNTANGGCATGAAATATTGCAGCNAAATCGGATTTNTATAGAAAATTTG | |||||||||
gi|208394970|gb|DC915679.1|DC915679 DC915679 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp TCATCATCATCATCATCCTCA EST sequence (targeted fragment marked with yellow): GACGCTACTTACAGTATTTTGGTTGATAACAAAGAGAAGGAATCTGGTAGCTTGTGCAAAGATTGGGACTTGTTGCCACCCCGAAAGATTAAAGACCTCAGTGCTAAGAAGCCGGAAGACTGGGATGACAACGAATTCATTCCAGACCCCGAGGACCATAAACCCGAGGGGTATGACTCAATACCAAAGGAAATCCCAGATCTTGATGCTAAGAAGCCAGAAGAGTGGGATGATGAAAGTGACGGAGAATGGGAAGCTCCATTAATTCCAAACCCAGAATTCAAAGGGCCGTGGACGCCAAAGGAAATTAAGAACCCTAATTACAACGGCAAATGGAAGGCTCCACTTATTAGTAACCCAGNATTCGAAGAGGATCCTGATCTGTATGTTTTGCCTCCATTAAAGTATTTCGGTATGGAGCTATGGCAGGTAAAGGCAGGGTCGGTTTTTGACAACATTCTAGTAACAGACGATCCAGAGTATGCCAAAAAGTTTGCTGAGGAGACTTGGGGAAATATCAAGGAAGGTGAGAAGGAAATGTTTGACGAGCTCGAGAACAAGAACCGCGAAGAACAGAAGATCGACGACAATGATCCGAATGAAGAAAAGGACGATTATGACGAGGATGACGATGATGATGATCATGATGAACTTTGAATTCATAGCGGTTCGCCAAATGAGTGAATATGGAGCAGTAAGCTGATCTATCGAGAAGAGAATTTAGTACATGTGCGGATACGTCCCATTTGTGGATGGTGTGCAG | |||||||||
gi|208396018|gb|DC915778.1|DC915778 DC915778 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp TCATCATCATCATCATCCTCA EST sequence (targeted fragment marked with yellow): GGGCATCATCAGCATTGCCACCAGAAACCGTATCCCCCGACGAAAGACTCGGCAGCATGGAGAAGTCTCGAGCAGAAAGCATCCCTGATGACGAAGAAGTTGATGAGGATGATATGCTTGCTGCCATGTCAAGTCTCCAGCTGAACAAGCAGAAAGCTTCTTCTTCTGAAATGGATTCTGAGGCTAGACAAACGGAGGACACAAGAAACGATGTTGTAGAGAAGGCAGGTGTTCTATCACGGAGTGAGGAATCTGTAGTGGAGGATGGAGATATTGATGATGATGATGAGAAGCCAAAGAAGGGTAAGTCAAGGCGGAGGGCTAAACAAGATCGAAAACAAGCGGCTATCTCTAATCGTTTCGCCACCCCTTCAACTGACCTTGAACAACCAGAATCAGTATCACAAAATGGCGACGCTACTTCCGACACAGGGGGCCCCTCCATTGGAGCAAACGAGAACGTTCGTGCTGTTAGTGAAGTTCCCCAGGTGAAGCACTCGAAGTTGGCCCATCGGGGTAAAAAGATCAAGAAAGAGAAGCTTTTGCAGAAGGGTGCAAAGCAAGATAGCCACACTTGTCAAACATGTGGAGAAGATTTCGAATCAAGGTCGCAGTTGTTCAAACATATTGCAGCGGCTAATCACGCTATTCTTAAGTCGAAGTAGACTAGTTGCCATCACTTCATCCAGCTCGGCATAATTATCAGCCCTTGGAAATGTTTTCTGAAAACATGTTTGGAGGTCGTGGCTGTAACTCTGTATTGTACCAATATGCCGGCGTCCTACAATTGTGGCCACAAAATA | |||||||||
gi|208393079|gb|DC929574.1|DC929574 DC929574 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. paten TCATCATCATCATCATCCTCA EST sequence (targeted fragment marked with yellow): AGGACGCTGTGTGAGGTTTTCGTGAGAATTTTCATTGCAGCATTTTGCATTTTTCTACCTCACTCCGAGTTTGCCAGTATCGCTGCATTCGGTTGTACGCAGGGGTTCGCTGGTGTGTAGCTTTTGTTTGGGTGGTAGTGGAGGAATCAGCAAAGAGCCATGGAGGCCGTCGACACTGTGGTGAGGCCTGTGAAGGACTTCGCCAAGGACAGTATCCGGTTGGTGAAGAGGTGTCACAAGCCCGATCGTCGAGAGTTCTCTAAAGTTGCGATCAGGACAGCTCTAGGCTTTATCGTCATGGGCTTCATCGGGTTTTTCGTCAAGCTCATATTTATTCCTATTAACAACATCATTGTCGGTTCTGGATAGTAGAGATTTTGGTGCGTTCTGTGCCTCGTAGAAACTCATTCTACACTTGTATCTCAGACGCAGACATCATATGCTATAAATTATGTATTAGTGTGCCGAGTCACATCTGTGATTAACACTGAGTTTCAGTCTTTAGGTCCAGGATATAGTGTGTACTTTTCTCACACTAAGCAAAAGAATTGATTAATTGCACAGTTTGGAAGGATTGGGTAATTGGTGTTCGACTTTTCGGGCGTAAGAGGACAAGCCAGTCTCCTTCGTTCTATAAAATAGCAGATTTGCGAACAGTTCCACCAATGTTTTTGACCTTCACTCAGTTTTTAGAGAATTTTCGTGTCCGTGCTATCCACCTTTCAGATTGTCCTGAGCTAATCCTGTATCTGTAGTGTTAGTAAGCACATGAGGCGTTATCTCATGATGATGATGATGATGATGATGACTACGNTGCGTTT | |||||||||
gi|208394970|gb|DC915679.1|DC915679 DC915679 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp TCATCATCATCATCATCCTCA EST sequence (targeted fragment marked with yellow): GACGCTACTTACAGTATTTTGGTTGATAACAAAGAGAAGGAATCTGGTAGCTTGTGCAAAGATTGGGACTTGTTGCCACCCCGAAAGATTAAAGACCTCAGTGCTAAGAAGCCGGAAGACTGGGATGACAACGAATTCATTCCAGACCCCGAGGACCATAAACCCGAGGGGTATGACTCAATACCAAAGGAAATCCCAGATCTTGATGCTAAGAAGCCAGAAGAGTGGGATGATGAAAGTGACGGAGAATGGGAAGCTCCATTAATTCCAAACCCAGAATTCAAAGGGCCGTGGACGCCAAAGGAAATTAAGAACCCTAATTACAACGGCAAATGGAAGGCTCCACTTATTAGTAACCCAGNATTCGAAGAGGATCCTGATCTGTATGTTTTGCCTCCATTAAAGTATTTCGGTATGGAGCTATGGCAGGTAAAGGCAGGGTCGGTTTTTGACAACATTCTAGTAACAGACGATCCAGAGTATGCCAAAAAGTTTGCTGAGGAGACTTGGGGAAATATCAAGGAAGGTGAGAAGGAAATGTTTGACGAGCTCGAGAACAAGAACCGCGAAGAACAGAAGATCGACGACAATGATCCGAATGAAGAAAAGGACGATTATGACGAGGATGACGATGATGATGATCATGATGAACTTTGAATTCATAGCGGTTCGCCAAATGAGTGAATATGGAGCAGTAAGCTGATCTATCGAGAAGAGAATTTAGTACATGTGCGGATACGTCCCATTTGTGGATGGTGTGCAG | |||||||||
gi|208394970|gb|DC915679.1|DC915679 DC915679 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp TCATCATCATCATCATCCTCA EST sequence (targeted fragment marked with yellow): GACGCTACTTACAGTATTTTGGTTGATAACAAAGAGAAGGAATCTGGTAGCTTGTGCAAAGATTGGGACTTGTTGCCACCCCGAAAGATTAAAGACCTCAGTGCTAAGAAGCCGGAAGACTGGGATGACAACGAATTCATTCCAGACCCCGAGGACCATAAACCCGAGGGGTATGACTCAATACCAAAGGAAATCCCAGATCTTGATGCTAAGAAGCCAGAAGAGTGGGATGATGAAAGTGACGGAGAATGGGAAGCTCCATTAATTCCAAACCCAGAATTCAAAGGGCCGTGGACGCCAAAGGAAATTAAGAACCCTAATTACAACGGCAAATGGAAGGCTCCACTTATTAGTAACCCAGNATTCGAAGAGGATCCTGATCTGTATGTTTTGCCTCCATTAAAGTATTTCGGTATGGAGCTATGGCAGGTAAAGGCAGGGTCGGTTTTTGACAACATTCTAGTAACAGACGATCCAGAGTATGCCAAAAAGTTTGCTGAGGAGACTTGGGGAAATATCAAGGAAGGTGAGAAGGAAATGTTTGACGAGCTCGAGAACAAGAACCGCGAAGAACAGAAGATCGACGACAATGATCCGAATGAAGAAAAGGACGATTATGACGAGGATGACGATGATGATGATCATGATGAACTTTGAATTCATAGCGGTTCGCCAAATGAGTGAATATGGAGCAGTAAGCTGATCTATCGAGAAGAGAATTTAGTACATGTGCGGATACGTCCCATTTGTGGATGGTGTGCAG | |||||||||
gi|208399007|gb|DC904416.1|DC904416 DC904416 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp TCATCATCATCATCATCCTCA EST sequence (targeted fragment marked with yellow): AAAAAAAGTCTGTCTGCCGCACAGATTTGGCCGCGCTGCCGTGGAAAATCTGTCACCTGGGCAGTGATTATGATGCGATGGCAAACCGCGCGATCCTTTCAACCGTTGTGAACTTGGAAGATGATGACGACGACGATATTAAGCTTCCCAGTAAGTCTGGGGACGCACTTGCTCCCCAGCCACCGGGAACTATTTCCGACAGCAGGTCTCCCTCCTATGTGAGTGACCTGGAACAAGATGATACCGATGACGAATTCAAGCCTCTCTTTGATTATACTGAAACCGTTCCATCTCCAACCTATTTTAGCGATGACGATGAGGACGATTTCAAATTCTCATCAGCTCCTAAACGCAGGTGCGTTAGGGCGCAAGCTAAGGAACCATCAACACCAAGTCCTCAGGAGGAGATAGTCACTGTGGGTGATGATGATGACGATGAAAGCTGGTTGTTACCCTCGCCCCCAAAGTCCTCGCCTCTCAAGTTTCCGAATAGGGCTACGTCTGCATTGCTTTCTGCAAATTATGCATTACACCAATTAAGGCAGAGTCAGACTGAGCTGATGGGGCTACAATTTGCGGCATCACCAGAGGGAATAAAAAGAGTTGAGGAGCAAGCAAAGCTGCAATTACAACATCGTCCAGACCCGGAGTCTCCTTTGGCCGCGAATACTTCCAAGGATTTGAACTTTCACGAAGAGATACTAGAGAGTAAATCCGTTACTCCGG | |||||||||
gi|208394970|gb|DC915679.1|DC915679 DC915679 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp TCATCATCATCATCATCCTCA EST sequence (targeted fragment marked with yellow): GACGCTACTTACAGTATTTTGGTTGATAACAAAGAGAAGGAATCTGGTAGCTTGTGCAAAGATTGGGACTTGTTGCCACCCCGAAAGATTAAAGACCTCAGTGCTAAGAAGCCGGAAGACTGGGATGACAACGAATTCATTCCAGACCCCGAGGACCATAAACCCGAGGGGTATGACTCAATACCAAAGGAAATCCCAGATCTTGATGCTAAGAAGCCAGAAGAGTGGGATGATGAAAGTGACGGAGAATGGGAAGCTCCATTAATTCCAAACCCAGAATTCAAAGGGCCGTGGACGCCAAAGGAAATTAAGAACCCTAATTACAACGGCAAATGGAAGGCTCCACTTATTAGTAACCCAGNATTCGAAGAGGATCCTGATCTGTATGTTTTGCCTCCATTAAAGTATTTCGGTATGGAGCTATGGCAGGTAAAGGCAGGGTCGGTTTTTGACAACATTCTAGTAACAGACGATCCAGAGTATGCCAAAAAGTTTGCTGAGGAGACTTGGGGAAATATCAAGGAAGGTGAGAAGGAAATGTTTGACGAGCTCGAGAACAAGAACCGCGAAGAACAGAAGATCGACGACAATGATCCGAATGAAGAAAAGGACGATTATGACGAGGATGACGATGATGATGATCATGATGAACTTTGAATTCATAGCGGTTCGCCAAATGAGTGAATATGGAGCAGTAAGCTGATCTATCGAGAAGAGAATTTAGTACATGTGCGGATACGTCCCATTTGTGGATGGTGTGCAG | |||||||||
gi|208396232|gb|DC924026.1|DC924026 DC924026 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp TCATCATCATCATCATCCTCA EST sequence (targeted fragment marked with yellow): TTAGAGAAGNCTGTCGGAACGGAGATCGAGTGGAATTCTGNCAAGAACTTTAACGCAGAAGGTGATGAAGAAGAAAGCGAAAAAAGGATCAAAGAACACAAAACCTGTGACGAAGACTGAGAATTGTGATAGTTTTTTCAACTTCTTTAATCCTCCTCAAGTACCTGAGGATGATCAAGACATTGATCAAGAGATGGTCGAGCAACTTCAAGACTTGTTGGAGCAAGACTACGACGTAGGGTCCACGATTAGGGACAAGATTATTCCTCATGCTGTTTCCTGGTTTACGGGAGAGGCTTTGCAAGGTGAGGATTTTGAAGATGATGACGAAGAAGGCGACGACGACGACGACGACGACGAAGATGACTATGATGAAGATGAAGACGATGAAGAGGAAGATGAAGACGAGGAAGATGATGATGAAGAAGAAGTGCGAGGCCGCAAGCGTGTAGTTCCCACACGGAAGGGTGGTGCATCCAAGGCGTCTGATGGACAGCAACAAAGTGGCGAGCAGCCTCCGGAGTGCAAACAGCAGTAACCTTATGGGAAGGACGGATAATTTATTTTGAGGTTGAGATAGTACATTAAAAATTGTGGCAGCATTTTGAGGGACAAGATCCCAACTGAATCTTTAGTTGGCGAGGCACCTGCAATTATTACCTAGTTCGAGTGCTGAGGTTTTCTCGTTCATCCTCGAGGATGGTTCGTTAAATCTATTTGTTCGTGATTAGTGGATAGGGCATGAAATATTGCAGTGAAATCGGATT | |||||||||
gi|208392005|gb|DC941853.1|DC941853 DC941853 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. paten TCATCATCATCATCATCCTCA EST sequence (targeted fragment marked with yellow): GCATTCTACCGCCTCCCTTTCACTGTCTTCCTCTCCTCATCGCTTCCCTATCCGTTGTCGCTGTCGCTCCGGAGCCCCGCAATCAACATGGGTGCGTCGTTCGACTTCTCCGGCTCTGATGGCTTGAAGAAGCTTGATGAGTACCTCGCCACCCGCAGTTACATCTCTGGGTACCAAGCTTCTCGGGATGACCTTGCCGTCTACGTTGCCTTGGAGAGCGTGCCCGCGGAGTATGTGAATGCCTCCAGATGGTACAAGCACATCTCAGCGTTGGTCGGACCCTCATTTTCCGCCCCCGGCGCTGGAATCCAAATTTCAAGCGGCGCTGCCCCTTCCGCCGTTAAGAAGGAAGCTGCCCCAGCTGAATCTGCACCTGCCGCCGAGGCTGCCACCCCCGCCGCCGAGGGAGAGGATGATGATGACCTTGACTTGTTCGGTGATGAGACCGAGGAGGAGGCCGCTGCCAACGCCGCCCGTGAGGAGGCCGCCAAGAAGGCCAAGTCCGAGAAGCCCAAAGTTGTTGGAAAGTCGTCTATTGTCATGGACGTCAAGCCATGGGACGATGAGACTGACATGGTGAAGTTGGAGGAGTGTGTTCGATCTGTCCAAATGGANGGTCTGCTTTGGGGTGCCTCCAAGCTNGTGACCGTGNTTGCTGGAATCAAGAAGCTTCAAATCATGATGANCATTGTCGATGACCTCGTCAGTATCGACAACCTGATTGANGACATCTGACTCGAGCCNACA | |||||||||
gi|208399007|gb|DC904416.1|DC904416 DC904416 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp TCATCATCATCATCATCCTCA EST sequence (targeted fragment marked with yellow): AAAAAAAGTCTGTCTGCCGCACAGATTTGGCCGCGCTGCCGTGGAAAATCTGTCACCTGGGCAGTGATTATGATGCGATGGCAAACCGCGCGATCCTTTCAACCGTTGTGAACTTGGAAGATGATGACGACGACGATATTAAGCTTCCCAGTAAGTCTGGGGACGCACTTGCTCCCCAGCCACCGGGAACTATTTCCGACAGCAGGTCTCCCTCCTATGTGAGTGACCTGGAACAAGATGATACCGATGACGAATTCAAGCCTCTCTTTGATTATACTGAAACCGTTCCATCTCCAACCTATTTTAGCGATGACGATGAGGACGATTTCAAATTCTCATCAGCTCCTAAACGCAGGTGCGTTAGGGCGCAAGCTAAGGAACCATCAACACCAAGTCCTCAGGAGGAGATAGTCACTGTGGGTGATGATGATGACGATGAAAGCTGGTTGTTACCCTCGCCCCCAAAGTCCTCGCCTCTCAAGTTTCCGAATAGGGCTACGTCTGCATTGCTTTCTGCAAATTATGCATTACACCAATTAAGGCAGAGTCAGACTGAGCTGATGGGGCTACAATTTGCGGCATCACCAGAGGGAATAAAAAGAGTTGAGGAGCAAGCAAAGCTGCAATTACAACATCGTCCAGACCCGGAGTCTCCTTTGGCCGCGAATACTTCCAAGGATTTGAACTTTCACGAAGAGATACTAGAGAGTAAATCCGTTACTCCGG | |||||||||