| mature miRNA: TCATCGTCGGCGTCATCGTGG species: Citrus clementina database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|110880805|gb|DY303060.1|DY303060 KN0AAQ4YL08RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence TCATCGTCGGCGTCATCGTGG EST sequence (targeted fragment marked with yellow): CGAATCTGCCGTAGCATCTGGGCTAGATTCGACCTTGTAAGCATGGGCATGGGTATCACGATCTTGGTTGCATCATTGGGAGTGCTTGCGATGTTCGCTCGCGGCGTCAACAGCGATCGTGGTGCTCTTACTCCCCTCCTGCTAGGCTGGGGTCTCGCAGGCACTGTCATTGGAGCCGCCCTCGGTGCACTCGCCGGCTTTGTGCCCTCCTTCACCTTCTTGCACACTTTGGCATTCGGTGCTGCACTTGGCGGCATCATTGGTATGTCGCTCGGCTTTTATCCCGCAAGAGAGGCACTGCGTGTACCCTACCCGCGCACATTCTGGGGTGGACTCAGCGCAGTCACCTGTGTCATGCTCTGCATTGGCTTTGCTTCTAATTCCTTCACAATCTGGGAGGACGAGCAGCTTCTGTTCTTCCTTACCACATTTGGTGTGCTCATGCTTGCGTCCTCTCTCGGTCTCGAAGACACTGCCGACCGAAATATGGGAGCAGCGAACGCCATCTCTTTCATCGTTGCGACAAGACTTGCTTCCGTGTTCCGCCTCTGTCGCGAAGAGCAGATGCCCTTCTGCAGGTCCACTTACTACGCCTCAGCAACATCTTCTACCTCCGCCACTTGGCAGTTGGCGATCCCGGTCATTGTCGCTCTCACCCTTCCTAGCGCGATGCAGTACTTCTACCACCGCACCAAGAACTACCAAGGCTCTGGTGTCATCTGGATTGGCATTGCTCTTCGCATTGGTCTTGCCTTTGTTTCTCTGTATTGGTTCCTCGATGTCGCCGATGATGGTGACTGGTATCCCTCCCTCTCCAAGTCCCTTCTGAAGACTACTCGTGTCACCCTGGCCACAATTACAATTCGCACTCGCTTTTCCCACCCGGGCTACGCAACCTACATCCTGTGCTCCGCCCCTGAATCGCGTAATCCAAAAAAGCTGCCCCCCCCCGAACCCCGGGGCCTGGCGAAACCTAATTGGAATCCCC | |||||||||
gi|218817930|gb|FC903033.1|FC903033 IC0AAA60AE03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60AE03, mRNA sequence TCATCGTCGGCGTCATCGTGG EST sequence (targeted fragment marked with yellow): AGTTAAAGAAAAGAAAAATAATACCACCATACCAAAGAGTGAAAGTGAAAGAGAAAAAGAAAGGTTAATCCAGTTTTTTGTAGCTAGTCCAGGAGAGAGAAGACCGAGAAAGAGAGAGAGAGAGAGAGAGAGAGGAATGAATAGAGGTATCTTGCCGAGCTCCCCGGTGCCGCCGATGATGGCCGGAAACCCTAATTGGTGGAATATCAATAGCATGAGGCCGCCTACTCCTCAAGCTTCCCCTTTCTTGCCTCCTCCCGCTAATAATCTTTTCCCACAATATCCTTCTTGTTATGATAATCAAGAACAGCTTCCTGAGTCATGGAGCCAACTCCTTCTGGGCCGGATGGTGGACGAAGAAGATAAGAGTGGTATGGTGGGCCATTTTCAGACCAAAAAGGTGGAGAACTGGGAAGAACAGATATTACATCACAGCTCATCAAGTGCTAATTCTGTTGTAAATGTGAAGCAAGAAATTAATCCTGCAGCAAACAGCTACTTTTATGGACATGCAAATGATGATCATTTCCAGGCGGCTGCAGCATCAGCAGCAACAAAAACTACTTCTTGGTCTCAAGTCATGCCTCCAGCTGCTGCTGCTTCATCTCCTAATAATAAGTCATGTGTCACAAGTTT | |||||||||
gi|110859698|gb|DY278555.1|DY278555 IC0AAA46DH08RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence TCATCGTCGGCGTCATCGTGG EST sequence (targeted fragment marked with yellow): ATTCAAAGTCCTCCATGCCGACTGCTCGTTCCTCCCTTCCATGGCAAAAGCCCCAGACAAAAAACCCAGAAGAAGCGCCGGCTTTCTTTGCTGTTTTGGGGTTTCCCGGAAAGATGAAAATTTTTCCGAGAAAATATCATCAGTGAACAAAGTTGTTGAAGTTGAATCCAGTAACAGCGGCGATAAAGACAAAGGAACAGTCCCCTTAGATACTGCTACTACTACTGGTTTGTTTTCTTTTTGGCCAATGTTTCGTATGAAAAACTCCTCCGCTAAAACGGTCCCTTTAGATACTCCTTCGGACAAGAGCACGGATCTGTCTGAAAACAATATCCATTCATCGAAGTCATCGAACTCCTTTAAACCCAAATGGAAGATTCACAGGTTGTTCAAAAAGCGCACGAATTCAAACACCAAAACTATGCCGTTTCGCGAAATTAAAACTCTCGTGAAGGAAGAAATGATTGAAGAGGGACCCGAACAAAACAACACCCTTGAAAATCGGAAATCACTTGATCGTCGTCATGCGGATACTTCAAAGGACGCCACGTGTCGGAAGCGGTTATCATTCCGCCGCAAGATAGACGCCATAAGAAACGGGTCCTCGAATCAGCCCGGTTCGCCCGATGTCGTCGCCAAGCCCAAGCCTCCTCCTCGTGCTAGGACGACTGATTCCAACGCGGGTAAGGCTGCTGCTGCTACGTTAAAACACTCAGTTTCTATGCCGGTAGCGGCCCGTCACAAACGGGCGAACCAGTTGTCGTCGAAATCTCGGGTCGTGCCCAAGAAGACCGGCCAAGATGATAATGCGATGGTGGTCAACANGTTTGACCCGGGTGTGGGCATGTCCCATATTGTGGTCACTTTGATTATTATGTTCATCTGGGGGCGATTGTGTGCGATTTTGTGTACGTCTGCATGGTTCTACTTCCTCCCTCGATTAAGGGCCATCAAGAATGATGATGCTGCCGACGATGAAAATCAACCGGGGATCTTGATATGAATTCTCAAAAATACAAAAAAAAGGGGGGTTTTGGGAGGGATTTCCGGAAAAG | |||||||||
gi|218822626|gb|FC892445.1|FC892445 KN0AAQ4YL08RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ4YL08, mRNA sequence TCATCGTCGGCGTCATCGTGG EST sequence (targeted fragment marked with yellow): CGAATCTGCCGTAGCATCTGGGCTAGATTCGACCTTGTAAGCATGGGCATGGGTATCACGATCTTGGTTGCATCATTGGGAGTGCTTGCGATGTTCGCTCGCGGCGTCAACAGCGATCGTGGTGCTCTTACTCCCCTCCTGCTAGGCTGGGGTCTCGCAGGCACTGTCATTGGAGCCGCCCTCGGTGCACTCGCCGGCTTTGTGCCCTCCTTCACCTTCTTGCACACTTTGGCATTCGGTGCTGCACTTGGCGGCATCATTGGTATGTCGCTCGGCTTTTATCCCGCAAGAGAGGCACTGCGTGTACCCTACCCGCGCACATTCTGGGGTGGACTCAGCGCAGTCACCTGTGTCATGCTCTGCATTGGCTTTGCTTCTAATTCCTTCACAATCTGGGAGGACGAGCAGCTTCTGTTCTTCCTTACCACATTTGGTGTGCTCATGCTTGCGTCCTCTCTCGGTCTCGAAGACACTGCCGACCGAAATATGGGAGCAGCGAACGCCATCTCTTTCATCGTTGCGACAAGACTTGCTTCCGTGTTCCGCCTCTGTCGCGAAGAGCAGATGCCCTTCTGCAGGTCCACTTACTACGCCTCAGCAACATCTTCTACCTCCGCCACTTGGCAGTTGGCGATCCCGGTCATTGTCGCTCTCACCCTTCCTAGCGCGATGCAGTACTTCTACCACCGCACCAAGAACTACCAAGGCTCTGGTGTCATCTGGATTGGCATTGCTCTTCGCATTGGTCTTGCCTTTGTTTCTCTGTATTGGTTCCTCGATGTCGCCGATGATGGTGACTGGTAT | |||||||||
gi|218818002|gb|FC912335.1|FC912335 IC0AAA47BH01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA47BH01, mRNA sequence TCATCGTCGGCGTCATCGTGG EST sequence (targeted fragment marked with yellow): CCGGCTTTGCAACTCAAAGATAAGGCGCGCACGACCCATGCACCGGAGGCCGACGTCGTTTCGTTCATTTTGATTTGACTGAACCAGAGACTGCATGAGAGAGAAAGATTTCGCGAGTAATAGGCGGTGCTTCAAGTGGAACTTGAAGTTGAGTAAGGGTTTGGTTTTGTATAATAATACTAGAAAGAAATGGCCACGGCCTTGGCCATTAGTCAACCGGTGTCGTTTAATTTGTTCAACGTTTCCGCCGGGAAAGCTTCTGCTCTATCACAACAACCGCCGTCTCGAATTCGTTATCGCCTCTCTTCTCGCCGATGGTTGAACCTCGACTCCACCTCCGCTTCTCATCGTTTTGTTTCGAGGTGTTCAATAACGAATACGGAGGTACAATTGGACCATGTTGCTGCCGACGATGAGGTTCGAGAAGATATGTCAACTAATGAAATGGAGTGTCCAGTCTCCGTTGTTCAGCTCAATTCTGAAATGCTTCAGATCAATTCTGAAATGCTTCAGATGGATTCTTTGACTTTACTGACTGAAGGAACTTTTGTAGATAGTCTTTTGACAACAATACCTGTTTTATCTGAGGAGGAGCAGAATGCCCTTGCTGCAACTCCAGCCCACCCAGAGGGTTTGTATGCTCTCTATGCCTGTTGTCTAGCTGGCAATTTGGTGGAACAGCTTTGGAATTTTGCTTGGCCTTCTGCTATTGCATTGCTTCATCCAAGCCTTCTGCCCGTGGCAGTCATGGGATTCTTTTCCAAGCTTATACTAATTGTTGGAGGTCCGTTAGTTGGTAAGCTTATGGATCATTCTCCCAGAATACCTGCGTATATTTGCTTGAATACTGT | |||||||||
gi|218822402|gb|FC914143.1|FC914143 IC0AAA60CD05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60CD05, mRNA sequence TCATCGTCGGCGTCATCGTGG EST sequence (targeted fragment marked with yellow): CACATTGCTTCCATAAAATACTCTCTGCAACAGATCCAGAAACCTGTACGTCATCAAATACTCGTCATCCCATTTTCTCAAATATTCCCTCTTCAAATCACTCTCGCTTATCATTGTATCCCCTCCTTCCGAAGCCTTCACTATTGCCTCCCCACAAATCCTCCCTGATTTTGCAGCAAAATAGATTCCTTCGCCCGAACATTTTGTCACGTACCCAGCCGCGTCTCCTACGAGCGCCACGCGTCCCGACACCCGCACGCCACGTGGGTGTTCCGGTATCGGGTGGGCCTCCACTTTCATCACCCTCCCACCCTTGATCTTTTGCCTGACTCTTTCCCTGATCCCTCTTTGATAGAATTTGATATCCTGCTTCGCGCGCACCGTGCCCGTGCCCACTGCCACGTGGTCGCATTTGGGGAACACCCACGCGTAAAAGTCGGGCGACACGTCGTTCCCCACGTACATCTCAGCGAGGTCTTTGTAGTATTCCATTTTGTCGTCCGGCAGTTTGATTCTCTCCTGGAAAGCGATGGCGCACGTGTAACCTCCGGCTTTTATGGATTTGGCCACGCGGCTGTGCGCCCCGTCGGCGCCGACGATGACGTCGACGGCCAGAGTGCGCTTGGAGTTGTCGATCGTGTGGTGTACGATGTAGGGAGCGGTGGGGGAGGAACAAGACGGGAGGTCGACGGCCGTGACGAGAGCGTGGAGGAGGTGGGCGCCGCGTGACTGGGCGCGCGAGCGGAGGAAGGAATCCAGCACTTCGCGGCGGAGCATGGGGATGTACTCGTCGGGTTTG | |||||||||