| mature miRNA: TCATTGAGTGCAGCGTTGATG species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|45980129|gb|CN142646.1|CN142646 WOUND1_11_G04.b1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_11_G04_A002 3', mRNA s TCATTGAGTGCAGCGTTGATG EST sequence (targeted fragment marked with yellow): GTACATTTCCAACTACATTCATAAGAATGATTGAAGGGAGGTTGATACAGTTCAGTTATTCTCTATATGGTACCAGTTCTATCAAATGTCATCTGCAAATGAACAATGCAATAGAGTTCCAATTAGAACCCTAAATTGTCCACAATTAAGAGCTGCCAATCTATAACTGTTCTCTTGTGTTACTACAATTTTTCTTCTTATCTCCAGTCTGTGACTCCGTGTTTGCATGTAGATATCATACAAAACTCGTCATACAGCTGCTTGAAATACTTGTTCATTTGGATTTGCAAACATTGTCCGTAGAAATTTTTCAACGACAGAGAGGAATTCCTCAGGTCTTTCCTCCTGGGGCAAGTGACCGCAACTCTTGATCACCTCAAACGTTGCTCCAGGTATAGCGCGTGCTACACGCTCAGCATTCCAAGCAGGAACGATGCGGTCAGTGTCACCTGTCACCACTAGCACTGGGCATGAGATCTCAGAAAGCCTCTTTGAAACTGGTGCTCTTGATGCAGATGCAGAATCTATGATCATGGATATGGTGTGCTCCAGAAGAGCTGTCTCCCAACCCTTGGATTTTAGAGGCTTTGTGTAACCTTGTATGACATGATCAGTTACTTTGCTTGGGTCATACCATGCGTTCCGGACACCCAATACACCAAATTTATCCATCACCCACCTTACCAGTGCTGCACCCAATGATGACCGAAGAAAAGCG | |||||||||
gi|33109897|gb|CF073238.1|CF073238 FE1_28_D12.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA clone FE1_28_D12_A002 5', mR TCATTGAGTGCAGCGTTGATG EST sequence (targeted fragment marked with yellow): TGGATCTCAGCTCATGCTTAGGTTTATGTTCTAACTTTGCTTCTTATGCCGATAGTTCAAGGCCAAATCTTGAGCACATATGATGTTCAGCAGGAGGATGGACTCTTAAAGAATACCCCAGCTATCCTTTGGAATCAGGACTAAACATGAAGTTCATGCTCCATATTTTGAGCATCTTCTGCTGTTTGTGTTCCTGTGCACTTGGACAAAACATTTCTGTGAGACCCAGTGTTGTAAACATTGGAGCTCTTTTTACATTCAGTTCGACAAATGGAAGAGCTGCCAAGGTTGCCATCGCTGCTGCAGTCAATGACATCAACAAAGATCCAAGTGTTCTTCGGGGAACAAAGCTGGTTGTTCAGATGCAAGATACCAACTACAGTGGTTTCATCGGCATTGTTCAAGCCTTGCAATTCATGGAGAAAGATACAATTGCAATCATCGGGCCACAATCTTCAGTTGTTGCACACGTCATATCCCATGTTGCAAATGAACTCCAAGTACCTTTGATGTCCTTTGCTGCAACTGATCCGACTCTGACACCACTTCAGTATCCTTTCTTTGTGCGTACCGTTCATAGTGATCAATT | |||||||||
gi|13393108|gb|BG464522.1|BG464522 EM1_70_G08.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence TCATTGAGTGCAGCGTTGATG EST sequence (targeted fragment marked with yellow): CGACATGCAGAAGTACGAGGCAGGCAAGGGGAAGGGCAAGGCTGCCGAGCAGGCCGAGGCCGAGGCTGGTCCCAGCGGCACCGGCAGGTCCCCGGCTGCTGCTGGTGATGCGTCTGCGAGAGCCACTGTCAGGTCGGTGCTGAAGGAGGTGAACCTGAAGGCGCCGACGCCGCCGCTGCACTCGATGAGCGTGCCCAAGGTGAAGTCCATTCTGGGGAGCGCCGGGCCGGGCTCTCGCCGCCCCGGTGTCCTCGAGTCGGTCCGTGCGGCTTCAGCCGTTTGAGTCGAGACGAT | |||||||||
gi|45986317|gb|CN146408.1|CN146408 WOUND1_41_B10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_41_B10_A002 3', mRNA s TCATTGAGTGCAGCGTTGATG EST sequence (targeted fragment marked with yellow): AGAGGAACAAACCAATAAAATCGCTTAATCAAGAGAGATATAATGTACATTTCCAACTACATTCACAAGAATGATTGAAGGGAGGTTGATACAGTTCAGTTATTCTCTATATGGTACCAGTTCTATCAAATGTCATCTACAAATGAACAATGCAATAGAGTTCCAATTAGAACCCTAAATTGTCCACAATTAAGAGCTGCCAATCTATAACTGTTCTCTTGTGTTACTACAATTTTTCTTCTTATCTCCAGTCTGTGACTCCGTGTTTGCATGTAGATATCATACAAAACTCGTCATACAGCTGCTTGAAATACTTGTTCATTTGGATTTGCAAACATTGTCCGTAGAAATTTTTCAACGACAGAGAGGAATTCCTCAGGTCTTTCCTCCTGGGGCAAGTGACCGCAACTCTTGATCACCTCAAACGTTGCTCCAGGTATAGCGCGTGCTACACGCTCAGCATTCCAAGCAGGAACGATGCGGTCAGTGTCACCTGTCACCACTAGCACTGGGCATGAGATCTCAGAAAGCCTCTTTGAAACTGGTGCTCTTGATGCAGATGCAGAATCTATGATCATGGATATGGTGTGCTCCAGAAGAGCTGTCTCCCAACCCTTGGATTTTAGAGGCTTTGTGTAACCTTGTATGACATGATCAGTTACTTTGCTTGGGTCATACCATGCGTTCCGGACACCCAATACACCAAATTTATCCATCACCCACCTTACCAGTGCTGCACCCAATGATGACCGAAGAAAAGCGACGAGACCTTTAAGACAGAAAGACCGAACCACATCTTGTATTGCTGTGATCATCTTGAAAACAAGCCCTGCAATGTGCTTCCATAGCT | |||||||||