mature miRNA: TCCAAAGGGATCGCATTGATC species: Populus nigra database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|161923486|gb|DB905630.1|DB905630 DB905630 full-length enriched poplar cDNA library, mixture of leaf, bud, stem, root Populus TCCAAAGGGATCGCATTGATC EST sequence (targeted fragment marked with yellow): CATTGGAATGTATGCCGAGCAGCTTGAAATGCTTTCTATTGCATTTGCTGGGGACACTGACAAGGGAATGAATTATGTGTTGAATGGTTGCAAAAAGCTTCGCAAGCTAGAGATAAGGGACTGCCCTTTTGGTAACGCAGCGCTTTTAATGGACGTGGGAAAGTATGAAACAATGCGATCCCTTTGGATGTCATCATGCGAAGTTACCCTTGGAGGCTGCAAGTCCCTTGCGAAGAAGATGCCAAGGCTCAATGTGGAGATCATTAATGAAAATGATCAGATGGATGTTAGTGCTGATGATAAGCAAAAGGTAGAGAAGATGTTCCTATATCGGACTTTGGCAGGGCGAAGGGAAGATGCACCAGAGTTCGTTTGGACTTTATAGGTGAACCAGGGGTGTGTTTTTTAGGCCCTGCTCAGTATTTCACTGTTATTAAGTAGTTGTACTTTGTTTAGGCAGCTGATTTTATGGATTTTTTAGCTATTGGTGTTCCAGTGGCATGCGACTATTTTTTTTTAAATTTGTAAGAGATTGCTACTTTG | |||||||||
gi|161921910|gb|DB905519.1|DB905519 DB905519 full-length enriched poplar cDNA library, mixture of leaf, bud, stem, root Populus TCCAAAGGGATCGCATTGATC EST sequence (targeted fragment marked with yellow): TCTACATTGGAATGTATGCTGAGCAGCTTGAAATGCTTGCTATTGCATTCGCTGGGGACACTGACAAGGGAATGCAGTAGCAATTGAATGGTTGCAAGAAACTTCGCAAGCTTGAGATAAGGGACTGCCCTTTTGGTAATGCAGCACTTTTAATGGACGTGGGAAAGTATGAAACAATGCGATCCCTTTGGATGTCATCCTGCGAAGTTACCCTTGGAGGCTGCAAGTCCCTTGCGAAGAAGATGCCGAGGCTCAATGTGGAGATCATAAATGAAAGTGACCAGATGGATATTACCGCTGATGATGGGCAAAAGGTAGAGAAGATGTTCTTGTATCGGACTTTGGCAGGGCGAAGGAAAGACGCACCAGAGTTCGTGTGGACTTTATAGGTGAATCTAGGGTGTGTTTTTGGCCCTACCTGGCATTTCTTTGTTATTAAGTAGTTGTACTTTGTTTAGGCCAGCTGATTTTATGGATTTTTTAGCCTGTTGGTGTTCTAGTGGCATGCTACTATTTTTTAATTTGTAAGAGATTTGCTACTTTGTACTGGATGTTTTTATAAATACATAACTGTGCTAGTATTGG |