miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TCCAAAGGGATCGCATTGATC
species: Populus trichocarpa x Populus deltoides
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|52535795|gb|CV282820.1|CV282820 WS0185.B21_L01 PTxD-IL-N-A-9 Populus trichocarpa x Populus deltoides cDNA clone WS0185_L01 3' 

TCCAAAGGGATCGCATTGATC
|||||||||||||||||| |
AGGTTTCCCTAGCGTAACAAA

EST sequence (targeted fragment marked with yellow):
TGCAGCTGTGACTGAAGTGGGCTTGGTTGCTCTTTCAAGTGGTTGCCGCAACCTTCACTCAATCCTATACTTCTGTCAGCAGATGACCAATGCAGCCCTCATAACTGTAGCTAAGAACTGCCCCAATTTTACCCGTTTCAGGTTGTGCATCCTTGACCCCACAAAACCGGACGCTGATACCAATCAGCCATTGGATGAAGGTTTTGGGGCTATTGTTCACTCATGCAAGGGGCTCAGGCGGTTGTCAATGTCTGGTCTGCTGACTGATAAAGTTTTCCTCTACATTGGAATGTATGCCGAGCAGCTTGAAATGCTTTCTATTGCATTCGCTGGGGACACTGACAAGGGAATGCAGTATCTATTGAATGGTTGCAAGAAACTTCGCAAGCTTGAGATAAGGGACTGCCCTTTTGGTAATGCAGCACTTTTAATGGACGTGGGAAAGTATGAAACAATGCGATCCCTTTGGATGTCATCCTGCGACGTTACCCTTGGAGGCTGCAAGTCCCTTGCGAAGAAGATGCCGAGGCTCAATGTGGAGATCATAAATGAAAGTGACCAGATGGATATTACCGCTGATGATAGTCAAAAGGTAGAGAAGATGTTCTTGTATCGGACTTTGGCAGGGCGAAGGAAAGATGCACCAGAGTTCGTGTGGACTTTATAGGTGAATCTAGGGTGTGTCTTTGGCCCTACCTGGCATTTCTTTGTTATTAAGTAGTTGTACTTTGTTTAGGCCAGCTGATTTTATGGCTTTTTTAGCCTGTTGGTGTTCTAGTGGCATGCTACTATTTTTTAATTTGTAAGAGATTTGCTACTTTGTACTTGGATGTTTTTATAAATACATAACTGTGCTAG


gi|73900584|gb|DT503322.1|DT503322 WS0136.BR_D16 PTxD-IL-FL-A-4 Populus trichocarpa x Populus deltoides cDNA clone WS0136_D16 5' 

TCCAAAGGGATCGCATTGATC
||| |||||||||||| ||||
AGGATTCCCTAGCGTA-CTAG

EST sequence (targeted fragment marked with yellow):
GATTTCCATGCGCTAGCAGCAGCGAAGAGCTCTTTTATCATTTAGAATCGACAACAAAATCCTGAGCTCTTCAACCGTTTCGAAATCAATATCCTTCTTAGTGCAGCTGGAGTGTTCCAAAGGGATCGCATTGATCTAATGACTCTCGATGTCTAAATCATATTAATGTTTAGTTTTTTCGTTGGATCATGCGATCCCTTAGGAATTTTCCAGCATTCAGCTCTAAATTTCCACCATGTTTTCAAGGTAAGCCAACACAAGCTTTGTATGGACATGTTTGATCCCTTCTATATATGTTTTTACAGTTTAGTGGTTTTGATTTCTTTTAATGTTTGAATTCAGTGTTAAGTCTTTATCAATATATATAGTAGCAAAATTAACTCAGCTAACTGTTCCACAGTGAGTAGGTGATCTCTTAAAGGGCAGCAGTAATAGCTTGACCCTTTGAAGGAAATAGTAGAATAGAGATCCCCCCCCCCCCCTCTCTCTATGATCCATGTCTTGTTTGTTGACTGGTAAACGTGTTTGTCTATGATTTCTTGGCTGCTGTACTTCAAGTTTCATGATCATATATAGCTATTATCACTTGTTAATTAGGTCAGGTTGCATCCCCTGATCAAATAAAAGATGGGGTTATGAGTTATGATCCTTTTTGTTTAACCATATATGCAACTAGCTAGGACAGATATTAGATAAATTAATAAAATTAGTAGAATATTACAGTAATTAAGAGAGAGTTAACACTTGATTAATTCTCCTCTTTTCGCTCTTTCCTCAACTGGATTATACATATTTCATTAAAATTCTAGTACTAGTTCAGGGCTCATCATTTATAAGTTACTAAAAATATATTAAACTGGATTAAATCTCAGCTTTGGTTTTGGTTCAAACATTTTGTACTCATCTGCT


gi|28604664|gb|CA821121.1|CA821121 F09C05 two-month-old leaves from clone 'Beaupre' Populus trichocarpa x Populus deltoides cDNA 

TCCAAAGGGATCGCATTGATC
|||||||||||||||||| |
AGGTTTCCCTAGCGTAACAAA

EST sequence (targeted fragment marked with yellow):
CGTGGGAAAGATTGAAACAATGCGATCCCTTTGGATGTCATCCTGCGACATTACCCTTGGAGGCTGCAAGATCCCTTGCGAAGAAGATGCCAAGGCTCAATGTGGAGATCATAAATGAAAGTGACCAGATGGATATTACCGCTGATGATGGGCAAAAGGTAGAGAAGATGTTCTTGTATCGGACTTTGGCAGGGCGAAGGAAAGATGCACCAGAGTTCGTGTGGACTTTATAGGTGAATCTAGGGTGTGTTTTTGGCCCTACCTGGCGTTTCTTT