| mature miRNA: TCCAAAGGGATTGCACTGTTC species: Brachypodium distachyon database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|270404782|gb|GT785609.1|GT785609 CCXG2111.g1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG21 TCCAAAGGGATTGCACTGTTC EST sequence (targeted fragment marked with yellow): CTCTCTATGCAGCCATTGCCAATTTGACATGCTAGCTAGCTGCTGTTTGTTTAATTTATAACCCCTTCTTCGATCTCCTCCTCCTCTTATAGCTTAGCTACTCAGATACATATAGCTCTCGTCGATCAGAAAGCGTTTGCAATTCGATCGACGTCCTAGCTAGCAACCATGGATGATATTTGAGCATATGCATGGCTAGCTCTGTGTGGGTAGCTGCTCTGGCTGGCAAATTAGTGTAAGCTTCAGGAAGCTAGTGGAGGACTCCAAAGGGATCGCATTGATCTCATCAGCTGCATCCAAGCATGAATCAACGGATGGATGGATCGATGCATATGCAAGATCAGTGCAATCCCTTTGGAATTCTCGACTCGCCTTTGCCTCGGTCGGTCACGCCCCTTTTTTTTTGCATCTGTCTGTAGACATGGATGATCAGCAGGTGCCGGGAGGATCAGCAAGCTTAATTTGGGTTTGGATGTTTGCAAGAATATTATCGATTTACCGTCACTTTGTCAGTAGTCTTTCAGGCCCAATTACTTATTTTTTTTGTTGTATATGGATCAACTGCTGCACATATGTTTCGAATATTTGGCAAAATGTAGATGATAGCAAAAAAAAGGAGCTAAGCTAGCAGCAGGCATCTCGGTACGTTTGGCAT | |||||||||
gi|270414062|gb|GT796201.1|GT796201 CCXG793.g1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG793 TCCAAAGGGATTGCACTGTTC EST sequence (targeted fragment marked with yellow): ATATCCAGGGCTATCTCTGTGGGGGTAGCTGCTTTGGCTGGCAAATTAGTGTAAGCTTCAGGAAGTTAGGGGAGGACTCCAAAGGGATCGCATTGATTTCTTCAGCGGCATCCAAGCATGAATCAACGGAGGGAGGGATCGAGGCATATGCAAGAACAGTGCAATCCCTTTGGAATTTTGGATTCCCCTTTCCCTCGGTCGGTCACGCCCCTTTTTTTTTGCATCTGTTTGTAACCATGGATGATCAGCAGGTGCCGGGAGGTAAATAATTTTGTCCCCCCGTATGCTTCTCCTTTTTCCGTTAATTATCTTTTTGTGGTTTTAAAAGGGTTCATTAATCGATCGATTTTCCCCATCTGGGTTGGGGTTTTTT | |||||||||
gi|270439131|gb|GT819845.1|GT819845 CCYO5675.g1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cDN TCCAAAGGGATTGCACTGTTC EST sequence (targeted fragment marked with yellow): TGCCAAGCTGGAGACAATGCGATCCCTTTGGATGTCGTCATGCTCGTTGACCCTGGGCGCATGCCGACAGCTTGCACAAAAGATGCCTCGCCTTACTGTGGAGATCATGAACGATCCTGGACGAGCATGTCCCTTGGATGCACTTCCGGATGAAAGCCCTGTTGAGAAATTGTATGTGTACCGGACAATTGCCGGTCCAAGGTCTGACACACCAGACTACGTCCAGATTGTTTAAGGGCGTCATGCTATATGGGGGTACTCTGGGTGTTCATTTTCAACCTCAATTGGTACCTTCTGCAATCTGCATCTTCCTAGCATAACATAGAGTTTTTTTAAGGCAAGTAGAAAGGCTGGTGGTTTGATGAACCTATCATAAGATCTCTACTTGACAAATGTAGGATGAGACTCGAGGCCTTTTTTCAGGTGTTAATAACTGTAGGGGGCTCGGTGGATTACAGAAACTACTAGATAGCGTCATGAGAAAACCTTGGTTTGTTTTCTTTAGCGTGTTTAGTTCCTTTTATGTATAAAAATATGGCACCATTTTAATCTTGTAATGTACTGTATTACTGGATAAG | |||||||||
gi|270478436|gb|GT863406.1|GT863406 CCYP15521.g1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA c TCCAAAGGGATTGCACTGTTC EST sequence (targeted fragment marked with yellow): AATTCGATCGACGTCCTAGCTAGCAACCATGGATGATATCTGAGCATATGCATGGCTAGCTCTGTGTGGGTAGCTGCTCTGGCTGGCAAATTAGTGTAAGCTTCAGGAAGCTAGTGGAGGACTCCAAAGGGATCGCATTGATCTCATCAGCTGCATCCAAGCATGAATCAACGGATGGATGGATCGATGCATATGCAAGATCAGTGCAATCCCTTTGGAACTCTCGACTCGCCTCTGCCTCGGTCGGTCACGCGCCTTCTCTTCTGCATCTGTCTGTAGACATGGATGATCAGCAGGTGCCGGGAGGTAAATGATTTTGTCCCTCTGTATGCTTCTCCTTTTTCCGTTAATTATCTTTTTGTGGTCTTAAAAGGGTTCATTAATCGATCGAGTTTCCCAATCTGGGTTTGGATTTTTATTTTATTTTGGAAATCTGGGTTTGGATTTTAAGCAGCTAGCGGCCTGCGGGTGTAAAATTGGAACGGGGTAGTAATTCGTTGTTAAGAATTATTATAGCACTTCTTTCTTTATTTTTTGTTACAGGATCAGCAAGCTTAATCTGGGTTTGGATGTTTGCAAGAATATTATCGATTTACCGTCACTTCGTCAGTAGTCTTTCAGGCCCAATTACTTATCTTTTTTGTTGTATATGGATCAACTGCTGCACATATGTTTCGAATATTTGGCAATATGTAGATGATAGCAAAAGAAAGGAGCTAAGCTAGCAGCAGGC | |||||||||
gi|270414061|gb|GT796200.1|GT796200 CCXG793.b1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG793 TCCAAAGGGATTGCACTGTTC EST sequence (targeted fragment marked with yellow): GGGAATTCGGGCATTGCGGCCGGGGAGCTACCAAAGCAATCTCCTGCCCCTGTGGCTCTCCCCCTTCCTCCTCTATAACTCTCTTCCTCTTCTCTCTATGCAGCCATTGCCAATTTGACATGCTAGCTAGCTGCTGTTTGTTAATTTATAACCCCTTCTTCGATCTCCTCCTCCTCTTATAGCTTAGCTACTCAGATACATATAGCTCTCGTCGATCAGAAAGCGTTTGCAATTCGATCGACGTCCTAGCTAGCAACCATGGATGATATCTGAGCATATGCATGGCTATCTCTGTGTGGGTAGCTGCTCTGGCTGGCAAATTAGTGTAAGCTTCAGGAAGCTAGTGGAGGACTCCAAAGGGATCGCATTGATCTCATCAGCTGCATCCAAGCATGAATCAACGGATGGATGGATCGATGCATATGCAAGATCAGTGCAATCCCTTTGGAATTCTCGACTCGCCTCTGCCTCGGTCGGTCACGCGCCTTCTTTTCTGCATCTGTCTGTAGACATGGATGATCAGCAGGTGCCGGGAGGTAAATGATTTTGTCCCTCCGTATGCTTCTCCTTTTTCCGTTAATTATCTTTTTGTGGTCTTAAAAGGGTTCATTAATCGATCGAGTTTCCCAATCTGGGTTTGGATTTTTAC | |||||||||
gi|270442139|gb|GT825445.1|GT825445 CCYO853.g1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cDNA TCCAAAGGGATTGCACTGTTC EST sequence (targeted fragment marked with yellow): AAGCCGTTGCTGGCAATGCTGCCAAGCTGGAGACAATGCGATCCCTTTGGATGTCGTCATGCTCGTTGACCTGGCGCATGCCGACAGCTTGCACAAAAGATGCTCGCTTTACTGTGGAGATCATGAACGATCCTGGACGAGCATGTCCCTTGGATGCACTTCCGGATGAAAGCCCTGTTGAGAAATTGTATGTGTACCGGACAATTGCCGGTCCAAGGTCTGACACACCAGACTACGTCCAGATTGTTTAAGGGCGTCATGCTATATGGGGGTACTCTGGGTGTTCATTTTCAACCTCAATTGGTACCTTCTGCAATCTGCATCTTCCTAGCATAACATAGAGTTTTTTTAAGGCAAGTAGAAAGGCTGGTGGTTTGATGAACCTATCATAAGATCTCTACTTGACAAATGTAGGATGAGACTCGAGGCCTTTTTTCAGGTGTTAATAACTGTAGGGGGCTCGGTGGATTACAGAAACTACTAGATAGCGTCATGAGAAAACCTTCGTTTGTTTTCTTTAGCGTGT | |||||||||
gi|270442138|gb|GT825444.1|GT825444 CCYO853.b1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cDNA TCCAAAGGGATTGCACTGTTC EST sequence (targeted fragment marked with yellow): TCGAGGCCCTGAGCTCATTAAATTTATTAGCAGATGCAAGAATCTGCAGCAATTATGGGTCATGGATCTCATTGAGGACCATGGTCTAGCTGTCGTGGCATCAACTTGCAGTAAACTACAAGAGTTGCGGGTCTTCCCTTCTGACCCTTTTGGTGCTGGGCAAGTTTTGTTGACTGAAAGAGGTCTTGTTGATGTTTCTGCCAGTTGTCCCATGTTGGAGTCGGTCCTCTACTTCTGCAGGCGGATGACGAAGGAGGCTCTTATTACAATTGCAAAGAACCGTCCCAACTTCACCTGCTTCCGCCTATGCATCCTTGAGCCCCGTACTCCAGATTACATCACACAACAGTCTCTTGATGCAGGTTTCAGTGCCATTGTGGAATCATGCAAGGGCCTTAGGCGCCTCTCTGTCTCCGGCCTTCTCACAGATCTTGTTTTTAAATCAATCGGTGAACATGCTGATCGTCTTGAGATGCTTTCAATAGCCTTCGCTGGGAACAGCGATCTAGGCCTGCACTATATCCTCTCAGGCTGCAAGAGCCTAAAGAAGCTGGAGATCAGGGACTGCCCATTTGGGAATAAGCCGTTGCTGGCAAATGCTGCCAAGCTGGAGACAATGCGATCCCTTTGGATGTCGTCATGCTCGTTGACCCTGGGCGCATGCCGACAGCTTGCACAAAAGATGCCTCGCCTTACTGTGGAGATCATGAACGATCCTGGGACGAGCATGTCCCTTGGGATGCACTTCCCGGATGAAAGCCCTGTTGAGAAATTGTA | |||||||||
gi|270451782|gb|GT832949.1|GT832949 CCYO14492.b1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cD TCCAAAGGGATTGCACTGTTC EST sequence (targeted fragment marked with yellow): ATATCCATGGGGTGTCAAAAATTGAGCTCATTGCTCTATTTCTGTCACCAAATGACCAACGCTGCACTAATTACTATAGCTAAGAACTGCCCAAATTTCACGCGATTCAGACTCTGTATTCTTGACCCGGGGAAGCCTGATGCCATGACAAACCAACCATTATATGAAGGCTTTGGTGCTATTGTTCGTGAATGCAAAGGGCTAAGGCGACTGTCAATATCAGGCCTTCTCACGGATAAGGTTTTCATGTATATCGGAACATATGCAAAAGAACTTGAGATGCTTTCAATATCATTTGCCGGACATAGTGATGCACGAATGATGCATGTTATGAAAGGATGCAAAAATCTGACGAAGTTGGAGATTAGAGATAGCCCATTTGGTGATGCTGCACTCTTGGAGAATGTTGCCAAGTATGAGACAATGCGATCCCTTTGGATGTCATCGTGCAATGTCACAGAAAAGGGGTGCCAAGTCCTTGCATCAAAGATGCCAATGCTTAATGTGGAGGTCATAAATGAGCTAGATGAAAACAATGAAATGGATGAGAACCATGGAGGGCTCCCGAAAGTGGACAAACTATATGTTTAC | |||||||||
gi|270409543|gb|GT791658.1|GT791658 CCXG5408.g1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG54 TCCAAAGGGATTGCACTGTTC EST sequence (targeted fragment marked with yellow): GAGATAGCCCATTTGGTGATGCTGCACTCTGGAGAATGTTGCCAAGTATGAGACAATGCGATCCCTTTGGATGTCATCGTGCAATGTCACAGAAAAGGGGTGCCAAGTCCTTGCATCAAAGATGCCAATGCTTAATGTGGAGGTCATAAATGAGCTAGATGAAGACAATGAAATGGATGAGAACCATGGAGGGCTCCCCAAAGTGGACAAACTATATGTTTACCGCACAACTGCCGGGGGAAGGGATGATGCACCAAATTTTGTTAAAATTCTATAGAGCTAGCTGAGAGTTGCCCGATATCTTATTCTGATAGATGGTCGGCGGAATCGGGCAGGCCCGGGCTGACAGTGGCAAGTCCTCCGGGTGTCTCCCTCCCCTTTGCGGTGGCCAGGAAAAGGCGCATCTGTGTGCCCCTTATCTTGGAGCATCTCTGTCCGTGGATCCATCATTCCCTTTTAGCGTTTGGTCATATGGCCACCCAATGGCCCTGCCTTTACCCTGTGCGTTCTCAAGAGGACCACCAATCGGACGCCCCCAACTTCCCTTTTTTTCTTCTTCCCTGTATTCCGTAGCAGTACCTATCTCATTTGCTTTTGACATTGCCACAGTGCATCGTGCTGCTGCTGCTGTTGGCTGTTGCGCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTAATGTTGTTTGTTTGAACCTTGTCCAGTTGTCCCGGAAGAACATTTCGAGGCGATGGCTAGTTTGTTGCTCCCTTGAATGGATTGAGCGCCTGGAAC | |||||||||