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mature miRNA: TCCAAGAACCTTGGGTCTGA
species: Populus trichocarpa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|24064208|gb|BU872684.1|BU872684 Q045G01 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence 

TCCAAGAACCTTGGGTCTGA
|||||||| |||.||| |||
AGGTTCTTAGAATCCA-ACT

EST sequence (targeted fragment marked with yellow):
GGGAAGCTGAGCCCCCTGAGCCTGTATCTTTGCCAGTCCTTTCAACTTTGTGGTTCCATCAAGAGAAAGTTGAGAAAAAAGGAGATGGGTGGCGATGGCAAAGTTTTCACTTTTGAAGAAGTGACTGTGCACAACAATCATAAAGACTGTTGGCTTATTATCAATGGCAAGGTTTATGATGTGACAAAGTTCATGGAAGACCACCCTGGTGGAGATGAGGTTTTGTTGTCTTCTACAGGGCAGGATGCAACTGATGATTTTGAAGATGTGGGTCATAGTGATAGTGCCAGAGAAATGATGGGCGAATACTGCATTGGAGATATCGATGCTTCGACTGTCCCTCTGCAAAAAAAATACAGGACTCCAAAGCAGCCTCACTACAATCAAGATAAGACCTCCGAGTTCATTATCAAGATCCTCCAGTTCCTAGTTCCTCTTGCCATATTGGGTTTGGCCTTCGGACTCCGCATGTACACCAAATCAACCTAAGATTCTTGGATCATGTTCCAATCACGAACAACTAGTATTTTA


gi|73895651|gb|DT498389.1|DT498389 WS0115.BR_D12 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0115_D12 5', mRNA sequence 

TCCAAGAACCTTGGGTCTGA
|||||||| |||.||| |||
AGGTTCTTAGAATCCA-ACT

EST sequence (targeted fragment marked with yellow):
GGAGCCCCCTGAGCCTGTATCTTTGCCAGTCCCTTCAACTTTGTGGTTCCATCGAGAAAGTTGAGAAAAAGGAGATGGGTGGCGATGGCAAAGTTTTCACTTTTGAAGAAGTGACTGTGCACAACAATCATAAAGACTGTTGGCTTATTATCAATGGCAAGGTTTATGATGTGACAAAGTTCATGGAAGACCACCCTGGTGGAGATGAGGTTTTGTTGTCTTCTACAGGGCAGGATGCAACTGATGATTTTGAAGATGTGGGTCATAGTGATAGTGCCAGAGAAATGATGGGCGAATACTGCATTGGAGATATCGATGCTTCGACTGTCCCTCAGAAAACAAAGTACAGGACTCCAAAGCAGCCTCACTACAATCAAGATAAGACCTCCGAGTTCATTATCAAGCTCCTCCAGTTCCTAGTTCCTCTTGCCATATTGGGTTTGGCCTTTGGACTCCGCCTTTACACCAAATCAACCTAAGATTCTTGGATCATGTTCCAATCACGAACAACTAGTATTTTATTTAAGCTATTATATTCCATGTTCAGAAACGTAGTGTAGTCCCATTGTGGTGCTTGAGTTTGTTCTGGTCCTGTGCTATGCCATACTACAACTCTCAGTTGCAACTCTGTTATTGAAACATGAAAAATAAAGTACTTGGCAATTTCCAGACAAAAAAAA


gi|60711820|gb|DN501630.1|DN501630 V010E10.5pR Populus male catkins cDNA library Populus trichocarpa cDNA clone V010E10 5', mRNA 

TCCAAGAACCTTGGGTCTGA
  |||||||||| .||||||
CTGTTCTTGGAAATCAGACT

EST sequence (targeted fragment marked with yellow):
GGAGGGAAGAGATGTGGAGTCATTAGATGTTGTAGTTAACTTAGCTGCAACAACCAACTTTGATGAAGGGTATGATGTTGCACTTGGCATCAACACAATGGGAGCGAAGCATGTCTTATGTTTTGCCAAGAAATGTGTCAGACTAAAGGTTCTTGTCCATGTATCCACTGCTTTTGTTTCGGGGGAGAGAGCCGGGCTGATTCTAGAGACTCCATATGGCGTAGGCGACACCCTTAATGGTGTCTGTGGATTAGACATCGATGAAGAGAAGAAACTGGTTGATCAAAAACTAAATGAACTTCAAGCTGAAGGTGCCACAGCTGAAGCAATTAAGGATGCCATGAAAGACATGGGCATGGAAAGGGCTAAGGTGTATGGATGGCCAAACACCTATGTATTTACAAAGGCAATATGAGAGGTGCTTGTACGACACTTGAAGGAAGATTTATCCGTGGTCATCATACGCCCTACCATTGTTACCAGTACATACGAAGAACCTTTCCCCGGTTGGGTTGAAGGTGTCAGAACAATTGATAGCCTAGCCGTTGGTTATGGGAAAGGAAGACTAACATGCTTTCTTGGAGATATTACAGGAATCGTTGATGTGATACCAGCTGACATGGTGGTGAATGCGATAAT