| mature miRNA: TCCACTATGGACTACATACGGA species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|217058688|gb|GH225898.1|GH225898 HVSMEm0007D06r2 Hordeum vulgare green seedling (Blumeria infected) cDNA library HVSMEm (HVcD TCCACTATGGACTACATACGGA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTAAAATGAAGGGGGTCTGAATTTTAAAATTTTAAATCCTGGCCTAGTACGATGTACAGTTTAAAGAGTCCACGCGAATTGCCGTTTTGATCATACGGAGCTGGATCAAATTACATGCTCTCACAGAGTGCACGCTAACAGTGTACTGTACTACTCCCTTCGTTTCTAAATATAAGCATCTTAAAAATTCCACTATGAACTACATACAGATGTATGTAGTCATATTTTAGGATGTAGATTCACTTATTTTACTTCGTATCTAATCCATAGTGTAATTTCTAAAAGGTCTTATATTTAAGAACGGAGGGAGTAGTTTACAACACTGCCCTCCCTCCTTTTACGGACCTGGATCATACGGGCGCCGCGGTACCAAACCAGCAACAAACTTGCCACGCCCCTGCCCTCCTAACGTAACCACATCATGATCAACCTGACTCATGCAAGTATGCTTCGTTGCTATCGCGGCCGCCAGGGTCCCACTGCTTCTCGTCCTACTGCTTCTCCCATGCCCATTTGCTGGGCCTGAATATCTGCCGCAGGAGCGCCATCTTGGGGAC | |||||||||
gi|60272648|gb|DN177391.1|DN177391 HO37J18S HO Hordeum vulgare cDNA clone HO37J18 5-PRIME, mRNA sequence TCCACTATGGACTACATACGGA EST sequence (targeted fragment marked with yellow): GCACGAGGGAATGGCGTAGAGCACTGGAGTCGGTGTCGTTGTGAGGGTGTAGTTTAGGGGGACGGTGAACTTGTGATTCTTTTGTCATGTGTCGTGAACCATCTCATTTTCTATCTTTGTCATGGTGATTCTGCCATACAAGTCGTGTCAGGTGTGTACTCCCTCTGTTCCTAAATATGAGTCATTTTAGAGATTTCAATACGAACTACTACATACAGATCTATATAGACATATTTTAGTGTAGTTTTACTTATTTTGCTTCGTGTGCAGTCCATATTGGAAGCAGCCAGCCTCGCAGCAAGAGACGGGGGTAAACTCTTCAAGGTATCACCATGATCCTTATCGTCCTCCTCTGGGATGTTGATTAGATGTTGCCACAGGAAATAGTGACTCAACATCCTTTAGCGTTAGAGCAAGCTCGTTTTTGAAGTTTTTTCGACTTGTGGTTGATTGTGAAGCACACAGCTCTGCCCTTGTTCATTTTGTATATGCTGTCTTCTATTGTTTTTTTCACTTGAACACCAGTAGTTCTTTGAGTTTTTTCTCTCTCCAAGAACACTTTCAATGAAATAAATGAGCATAGGATGCGATGCTTACT | |||||||||
gi|161450659|gb|EX594051.1|EX594051 HDP32P11T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP32P11, mRNA sequence TCCACTATGGACTACATACGGA EST sequence (targeted fragment marked with yellow): ACTTTAAAATATGCCTATATATATTCGTATGTAGTCCATAGTGCAATCTCTACAAGGTCTTATATTTAGAAACAAAGGGAGTACTACTGTAGGCTCTAACCAACGACACTCGTGAGAAATGCCACGAGAATCGAACTGTTGCTACTACCGGATTTAATTTCTTCAGGGAATCGGGCCATCTCATCAAAGTACTAGTATATGGTTCCAGTAAACAAAACAACCGCCAGAGAAATTCTACTCGTACGTAAGATGGAGCAGCAGCAAGTCACAGATTGCATCAGAACCCCCTCGTGAATTCTTCATGGCTCCGTCGAGCAGTAGCGAAGCAGAGCAAGAAAGGCCTTGGACTCCCCAACTGAACACCTCTCAAGATTTGCTTGCGCATCCGCACCAGCGCTACACCGAGTTTATGTACACCGTCACGCCTGTGTTCTCGACGTCGGCGCTGCCTGCACAGGCACCCCCGTTCGCCCGTTACGAGACCGCAATCTACCGAGACGCAAATCGACGGAACTACCACATCCACATGCCCGGCCCGGCCCGGCCACGTAAGCTATACAAGTCAGAACACCGACGAGAAGTCCGACGACGACGACGAGGAGCCCGACTC | |||||||||
gi|21158631|gb|BJ480160.1|BJ480160 BJ480160 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TCCACTATGGACTACATACGGA EST sequence (targeted fragment marked with yellow): TTCGGCACGAGGTACTCCTTCCGTTCCTAAACATAAGACCTTCTAGAGATTTCAATATGGACTACATATGGATCTATATAGACTTATTTTAGAGTGTGCATTCACTTATTTTGCTCTGTATGTAGTCCATAGTGGAATCTCTAAAAGGTCTTACATTTAGGAACGGAGGGAGCAGAATGCTGTTCTCAATAATGCAACAGTTGAAACAGACAATCCTGATCTGCGTGATCGAGCTTACATATACTGGCGACTTCTTTCTACTGATCCTGAGGCAGCAAAAGATGTTGTTCTGGCAGAGAAGCCTGTGATCAGCGATGACTCTAACCAGCTTGACTCTTCGCTTCTTGATGAGTTATTAGCAAACATTTCTACATTATCATCAGTTTATCACAAGCCCCCCGAAGCCTTCGTCAGCCGTGTTAAGGCAGCTCCTAGGGCGGATGATGAGGAGTTCGCTGATGCTGGAGAAACTGGGTATTCGGAGTCACCATCTCAGGGAGTGGATGGGGCATCACCGTCCTCTAGTACTGGCACTTCATCAAATGTACCA | |||||||||
gi|21152781|gb|BJ474278.1|BJ474278 BJ474278 K. Sato unpublished cDNA library, cv. Haruna Nijo adult, heading stage top three lea TCCACTATGGACTACATACGGA EST sequence (targeted fragment marked with yellow): GGATTAACATTGGAACACGAGATATACAAGGCGGCAGTGTCCCTTAGGAGCTACAGTCAGGTTTCAAGGATAAACCCTGGAAAATCTATTCCGCATGCGGTCCTTAGTGGAGCAAGTGGACTTGCTATCTTGACAGTTGTAAAAGCTGGTGCATTTCTTACATACAAACTTGGAACTGGCTTAGTAGTTGCTCGTAGATCAGATGGATCATGGTCTCCACCGTCTGCTATAGCTTCAGCTGGATTAGGATGGGGAGCACAGGTTGGCGGTGAGTTGATGGATTTCGTCATAGTGCTTCATGGTCCTGAAGCTGTGAAGACCTTCAGCAGCCGAATGCATTTTTCAATCGGTGCAGGTTTAAGTGCCGCAGCAGGACCTGTTGGTAGAGTATTAGAAGCTGATGTGAGAGCTGGTAATAAAGGCTCCGGAGTTTGCTATACATATAGTTGCAGCAAAGGTAATGTTCTTGTTCAATTCTACTTCCTCTGTACCAAAATAATTGCAGTTGGAGAGAAATAGACTAGTATTTCTCCCCAACTACAATTATTTAGGAACGGAGGGAGAATTTTTTAGGCTGCTTGTATCATGTGAAGTCCAGCTCTGTTTGTATTGGCATGTTTTTTGTTTGTTTGAGGAAACGCAAAAGCCTACAGCTAATTATGAAGAACTATGTACAAGTGTCAATCTTCGTAATAGTCCATCCGGCTCATGCACCGGTG | |||||||||
gi|24290810|gb|CA013466.1|CA013466 HT08I16r HT Hordeum vulgare subsp. vulgare cDNA clone HT08I16 5-PRIME, mRNA sequence TCCACTATGGACTACATACGGA EST sequence (targeted fragment marked with yellow): CCTTATGTGAGTGAGTCCCCGTCTCCGATGCCTTCGCTCGTAATTTGATTTCAGTTCGATTTGTTCCGACACATGAGAATACCGCCCCGGCCCTAGTTTTGCAGCGATATCGAAAATCCCAGTTTTATATAGGCTGCTTGTGTTTAGCTTGGTTTACAGCCATAGGGAAAATCTACTGATTGCTCCCTTCAAGAGTTTCCAGGTGCGGATTGGGTTGAACAATTGTAGATGATGTGAATTCGGTGCATTCTTTGGTGTGGAAACCTGAAGGTTGTGTCATGCTTGACTGCTTGGAGATTTGACCAATCAATGATCTAGTGACGCGGAGCAAATCGACACTACGCTTTCCTGTCATCAAGGGCCACCTGTTCGCACTTGATCTTACTCCCTCCGTTCTTAAATATAAGTCTTTTCCACTACGGACTACATACAGAGCAAAATGAGTGAATCCACAAACTAAAGTATGTCTATATACACCCGTATGTAGTCCGTAGTGGAATCTCTAAAAAAGACTAATATTGAGGAACGGGGGAATACAAGTTAGAGATGAAGAAGGAAAATTTGTGTCCTCCAAACGTAATTACTTGTTTTCGCGAT | |||||||||
gi|21185546|gb|AJ469590.1|AJ469590 AJ469590 S00008 Hordeum vulgare cDNA clone S0000800068D01F1, mRNA sequence TCCACTATGGACTACATACGGA EST sequence (targeted fragment marked with yellow): TTTTTGTGGGGTTTGTTCTGGAAACAGAGACAACATATCTCAATGCGAAATGGTTCAACCCTCGGGTTTTAATGTTGTATGTTTAGCCATTATTAGGTATATGAAAAAGTATTTCGCTACCACCATGCTTCTATTCTGCATGTTCTTTTTGTCATAGGATGCATGTCACATCATTAGTACTCCTTGTTCCAAAATATTTGTCCTTTTAGAGATCAAACTACGGACTACATACGGAGCAAAATGAGTGAACTTACACTCTAAATTATGTCTATATACATCCGTATGTAGTCCATAGTGAAATCTTTAGAAAGACAAATATTTAGGAACAGAAGGAGTATTAAGTATGAGGTAGGGGTTTTAGGCCTTTAGGTAGATCTCAAAGTCTCATTGAGATTTATGGATCATAGTACCAGCTCATGGGAGTGTCTGATTGTTGGTAGAAACCAGTGAGAGAGAGAAACATTTAATAGAGATGCCCGT | |||||||||
gi|161447061|gb|EX581232.1|EX581232 HDP22B24T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP22B24, mRNA sequence TCCACTATGGACTACATACGGA EST sequence (targeted fragment marked with yellow): CTATATATATTCGTATGTAGTCCATAGTGCAATCTCTACAAGGTCTTATATTTAGAAACAAAGGGAGTACTACTGTAGGCTCTAACCAACGACACTCGTGAGAAATGCCACGAGAATCGAACTGTTGCTACTACCGGATTTAATTTCTTCAGGGAATCGGGCCATCTCATCAAAGTACTAGTATATGGTTCCAGTAAACAAAACAACCGCCAGAGAAATTCTACTCGTACGTAAGATGGAGCAGCAGCAAGTCACAGATTGCATCAGAACCCCCTCGTGAATTCTTCATGGCTCCGTCGAGCAGTAGCGAAGCAGAGCAAGAAAGGCCTTGGACTCCCCAACTGAACACCTCTCAAGATTTGCTTGCGCATCCGCACCAGCGCTACACCGAGTTTATGTACACCGTCACGCCTGTGTTCTCGACGTCGGCGCTGCCTGCACAGGCACCCCCGTTCGCCCGTTACGAGACCGCAATCTACCGAGAC | |||||||||
gi|30073103|gb|CB871123.1|CB871123 HC02G07y CH Hordeum vulgare cDNA clone HC02G07 3-PRIME, mRNA sequence TCCACTATGGACTACATACGGA EST sequence (targeted fragment marked with yellow): CAGTCTGTATGTATTCCATATTGGAATATCCAAAACATGTTATATTTGTGAACGGAGGGAGTACAATGTTAATGAGTGAACAAAAAACATGAGTAGATTCCAATTTAGATTAAACAGATATGCTACAACAAAAAACAAGCGCGTGGCCAACAAGGCTAGTTCATCAGCGACACTGCAGAATGTTACAGTTGCATCCAAGATCAATAGCGACCGACACACTGTGGAGCACCAGGGACCAGTTTTCCTGAACAACTCCAGTCAATTATTCATCATCCCGAAACAGAAACAAGAAAAATCCTCACCCTGGCGCGGTCAACAATCGGAAGGGCGGGCACTCAGCCGGCCATGGGGTGGTTGGCAACGTACTCGATGGCGAGCGGAAGCGAGTTGATCTTGTCGGCCTCCAAGTCGGGGATCTCGAGCTTGAACTCCTCCTCGATCGCCATCACCACCTCCACCGTGTCCAGGCTGTCCAGACCCAGATCCTTCTCGAAGTGCGCCTCGGGGGTCACCTTGGAGGGGTCGACCTTGGGGTGGCACTTGATG | |||||||||
gi|21153059|gb|BJ474556.1|BJ474556 BJ474556 K. Sato unpublished cDNA library, cv. Haruna Nijo adult, heading stage top three lea TCCACTATGGACTACATACGGA EST sequence (targeted fragment marked with yellow): TCCGCATGCGGTCCTTAGTGGAGCAAGTGGACTTGCTATCTTGACAGTTGTAAAAGCTGGTGCATTTCTTACATACAAACTTGGAACTGGCTTAGTAGTTGCTCGTAGATCAGATGGATCATGGTCTCCACCGTCTGCTATAGCTTCAGCTGGATTAGGATGGGGAGCACAGGTTGGCGGTGAGTTGATGGATTTCGTCATAGTGCTTCATGGTCCTGAAGCTGTGAAGACCTTCAGCAGCCGAATGCATTTTTCAATCGGTGCAGGTTTAAGTGCCGCAGCAGGACCTGTTGGTAGAGTATTAGAAGCTGATGTGAGAGCTGGTAATAAAGGCTCCGGAGTTTGCTATACATATAGTTGCAGCAAAGGTAATGTTCTTGTTCAATTCTACTTCCTCTGTACCAAAATAATTGCAGTTGGAGAGAAATAGACTAGTATTTCTCCCCAACTACAATTATTTAGGAACGGAGGGAGAATTTTTTAGGCTGCTTGTATCATGTGAAGTCCAGCCCTGTTTGTATTGGCATGTTTTTTGTTTGTTTGAGGAAACGCAAAAGCCTACAGCTAATTATGAAGAACTATGTACAAGT | |||||||||
gi|94343751|gb|BY860610.1|BY860610 BY860610 Etiolated seedling shoot Hordeum vulgare subsp. vulgare cDNA clone baet21d09 3', mRN TCCACTATGGACTACATACGGA EST sequence (targeted fragment marked with yellow): TCCGCGGTCTGCCTCTTCCTGCACGACGCAGCGGCTAGGAAGATCTAGCCGGCGCGGCGCGCAAGGAGAAGGAGAGGGGTCGCTCGAAGATACTCAGGCTTAGACTCCGGCAAAAGGCCGGCCGTTCAGCTGCATCTTGTACATGTTTCCGTTCTCCTTTTTGCCGGGGTTTTGTTTTTCTTTCAAATACTCTCTCGTGCTTACTACTCCCTCCGATTCCTAAATATAATACCTTTTAAAAATTCCATTATAAACTACATACAGATGTATGTATTCATATTTTAGGATGTAGATTCACTTATTTTGCTCCGTATCTAATCCATAGTGTAATCTTTAAAAAGTCTTATATTTAGGAACGGAGGGAGTATAATTTTATACTAAGGTTAGTACAAAGTTAAGACATTTATTTTGGAGCG | |||||||||
gi|94338486|gb|BY869542.1|BY869542 BY869542 Seminal root Hordeum vulgare subsp. vulgare cDNA clone bart57d11 3', mRNA sequence TCCACTATGGACTACATACGGA EST sequence (targeted fragment marked with yellow): CAGGTTTGGGAGAGGCGGTGGGGACAGCAGCGCGATCGACCAGGTGCGGCGCGTGTACATAACGACGGCAAAGGATTCCATGGTGAAGCCGGAGCAGCAGGAGGCCATGATTCGCCGGTGGCCACCGAGCAAGGTTGTGGCCATGGACACCGACCACAGCCCCTTCTTCTCCGCTCCGGAGCGTCTCTTTCAACTCATCATCAAGTTACTGTGACCACTTGTACATCATGCATACACGGTCTGGGTGACGCCTAGCTGCTCCTGCTATTGTATTCTCCAGTCTCCACTTCTCCAGTCTTCACTGTGTGATGTTACTTACTCCCTCCGTTCCTAAATATAAGTCTTTTAAGAGATTTCACTACAAACTACATACGGAGCAAAATGAATGAATCTCCACTCTAAAGTATGTCTATGTTCATCGGTATGTAATCTATAGTGGAATTTTTTTAAAGACTTATATTTAGGACCGGAGGAAGTCCATGCC | |||||||||
gi|13090193|gb|BF628552.2|BF628552 HVSMEb0006I06f Hordeum vulgare seedling shoot EST library HVcDNA0002 (Dehydration stress) Hor TCCACTATGGACTACATACGGA EST sequence (targeted fragment marked with yellow): TATCTATGGAGGTTCTGTAAACCCACCAAATTGTGCTGACCTATCAGAGATGGATGATATCGATGGCTTCCTTGTTGGTGGTGCCTCTTTGAAAGGTCCTGACTTTGCCACCATCTGCAACTCGGTGACTTCCAAGAAAGTTACAGCCTGATGTATACCACCACCTCCATGGTACTCCCTCCGTTCCTAAATATAGGACTTTTTAGAGATTTCACTATAGACTAGATACTGAGCAAAATGAATGAATCTACGTCCTAAAATATGAACACATGCATCCTTGTGTAGTCCATAGAGGAATCTATCAAAACGTCTTATATTTATGAATGGAGGGAGTAGAAAATTAACGATCACAGAGATACCGCTTGTCTAATGCGTCTGAAAGTGTCATATAGGTGCTCCCTGTGAACCGAATCGTGTTGAGTTCTGGTCTGGCTGGTTGTGCCGACCCCTACCCCAGATGAATTATGGGACATTGGCCCCTTTTTCCTTTTTATGTACCGTATTGGACGGGATGTTTGCTTGGTCCAATTGAGACGAGGAGTTTACCCGTCGTAACCTTCCCTCCTTGAAATAGTCACATTATGTAACAGCTCCATTTCCCTGACTATCTACACCACGTTTAGAAACAACACCTTGATTAAATTTTATAGGATACGCACAAAGGACACGGCGTGAATTTGATAAACATTCAGGTTGCCCACCGTTTTTAGCATTAGCTGCTCG | |||||||||