| mature miRNA: TCCATACACAAACCATTGGAA species: Pinus taeda database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|67048730|gb|DR070988.1|DR070988 RTDK1_16_G11.g1_A029 Roots, dark Pinus taeda cDNA clone RTDK1_16_G11_A029 5', mRNA sequence TCCATACACAAACCATTGGAA EST sequence (targeted fragment marked with yellow): AGTGAAGTTGAACGAGCTTTCAGATCTTCCTTTGTCAGAGGCAGAATCGGTTTATCAAGACCAGAAGATCGCATCACAGCTGGACGCTCTTGGTCTTGGAATTCAGAATTGCCGAGCAAGACTTTCCCTAAGAGAGGCCGGAGAAGTTATGAAGCAGCAGAGGGAGAACGTATCCAGATTGGAGAACGAATTAAAAGTAAAGATAAAAAGCGCCCTGAGTGAACTAGAAAAGTATCGTCGCCAATGCTTACTCTTTGGCATCGGATATTACGAGGCATTCAAACTTAAGCAACGACGTGAGCTAGACTTCAAGGCCAACCTCAAGAGGGTGGAGCTTGCAGGCTACTGGGACGAAATCAAACAGATGCTAGGAAGTGTTAAGCAAGACACAGTGAACCCATCAGTGGAGAAGTTTATCTATAAGCACGAGTTACCGGATGACTTCCAGTGCAGGGAAGAATGGATAAGACTGGGCACTTACTACAGGCTACTGGTTGAGCCACTCGACATCGCAAATTATTATAGACTGGGTAATCACGAGGACAGTACGGGACACTATCTGGTCGATGGAAGGCCTCGTCGTTACAAAATTCTTCAAAAATGGTTGGAAGATAGTGAACAGAATACCCAACTTCTACCATGGCCACAGCCTAAAATGTTCACACAGGACTCTTGCTTCTGGGCTTATGTGGAAGAAATCTCTTACTTGATGCATAATAATAACCTAGGAGGTGATCACAAATCTCATGCACTGGTCAAATCCAAATGCCAGGAATTAGAAGAGCGAGTGGGGCGTTTGATTGATTCCAATGGTTTGTGTATTGAAGAGGTTGTGAGTGGTCAATCTACTTTTTAAATGGTTGTC | |||||||||
gi|60669609|gb|DN463185.1|DN463185 EST958984 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone RPIIV69 5' end, m TCCATACACAAACCATTGGAA EST sequence (targeted fragment marked with yellow): TATGGATCCGGTGCCGGTGACGGGAGCGGCGTTGCCCGTGAGCCCGCTGTTCCATATGGATCCGGTGCCGGTGGTCCTACTGGTGGTTCCGGTGCTGGCTACGGATTTGCCCGTGAGCCGGCGCCCCCATATGGATCTGGTGACGGTGGTGTTACTGGCGGTTCCGGTGCTGGCTACGGATCTGGTGGTGGATATGCTGTTGGACATGGTGGCGGTGCTCGGGGCGGCTCTAGGTCTGGGTCTGGCTTCAGCTATGGAGGTGGTGCTGCTGGTCGTGGTAGTGGTGGTGACGGCAATGGTGGCTACTAGGCGTCTGTCACTGCCATAATATTTTATTATATTACATGTATTTAGTTATGATGCAATAGCGATCAAAATAAATAGAAAATCCATAGTATTGAGGATATGTTTGTTGAAGCTTGGAAAACGCCATGATTATCTGCTAGAATTCGCATTACTTCAACAAAGGAAAGAGGATTATTACGCTGGTTTGTCTATGGAATGGAATGTCCTGATGAAATGATTC | |||||||||
gi|66748007|gb|DR025637.1|DR025637 STRS1_72_G09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda cDNA clone STRS1_72_G09_A TCCATACACAAACCATTGGAA EST sequence (targeted fragment marked with yellow): ATTGGAAAAGTCACTGAGGCCTTTGATCGATTCCAATGGTTTGTCTATGGAAGAACTTGTGGCTGGCAACTCTACCTTCAACCGTGTGGTCAAGCGGTTGTGGGAAAACATGACTCCACTGCAGAAATCAACCTCTCCCATCTCCGATGTTATTGGCAGGCACCCAGACTGATGAACTAATCATGTAGATGATGTGAGTAGCCATTGCACAAGTAGTATATATTAGAGTAGTCTTGCTGTTTCTGTTGCTTTCTATATATTAGAACAAAGGTATTTCTCTTCACAATATCTTAAAGTTAAGATCAGCACTCACTCACATTATATATATATAATGAGTACGGATTTGAATGGGATGAAATGGTTTTATGGTTTTTGTATGAAATGGTTTTTATAAGTACTTATTTGAGTAGTCTTGCCTCGTGCCGAATTCGGCACGAGGCTCGTCTTTTGCAGTTCATTTTGTGCTGTGCTGTGTGGTAGCGGAGTGGTAAATAGTGCCAAGAGCCATAATAACAATTATGGCTGCAGGTATGATGAAGGATTTGGAGGCATTCAGGAAGGCTC | |||||||||
gi|67555448|gb|DR096093.1|DR096093 STRR1_25_E04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone STRR1_25_E04_A033 5', mRN TCCATACACAAACCATTGGAA EST sequence (targeted fragment marked with yellow): ACTGGGCACTCACTACAGGCTACTAGTTGAGCCACTGGACATCGCGAATTATTACAGGTTGGGAAAAAACGAAGACTCTGGGCCTTATCTCAGAAATGCCAGGCCTCGTCGTTATACAATTCTCCAAAAGTGGTTGGAAGAAAATAATGTGATTCAACAGCAGCAGCCATCCCCTACAGGCTCTGATCAGCCCACGATGCTCACTCAAGACTCCTGTCTCTGGGCTCATGTTGAAGAAATTGCATGTTTAACGCTTGCTAATAATGCAGGGGGTCATGAAAACTCCATAGCAGGATTGGAAAAGTCACTGAGGCCTTTGATTGATTCCAATGTTTTGTCTATGGAAGAACTTTTAACGCTTGCTAATAATGCAGGGGCTCATGAAAACTCCATAGCATGATTGGAAAAGTCACTGAGGCCTTTGATTGATTCCAATGGTTTGTCTATGGAAGAACTTGTGGCTGGCAACTCTACCTTCAACAGTGTGGTGAAGTGGTTGTGGGCAAACATGACTCCACTGCAGAAATCAACCTCTCCCATCTCCGATATTATTGGCAGGCACCCAGAACTGTTGAACTAATCATGTAGCTGATGTGAGTAGCCATTGCACAAGTAGTACATATTAGAGTAGTCTTGCTGTTT | |||||||||
gi|20383906|gb|BQ197944.1|BQ197944 NXLV123_A05_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA clone NXLV123_A05 5', mRNA TCCATACACAAACCATTGGAA EST sequence (targeted fragment marked with yellow): CGGCCATTATGGCCGGGGANNANATGCATGCTTAATAGGTGCTGATAATGCAGNNNNGGTCATGAAAACTCTATAGCGGGANNNGGAAAAGTCACTGAGGCCTTTGATTGATTCCAATGGTTTGTCTATGGAAGAACTTGTGGCTGGCAACTCTACCTTCAACACTGTGGTCAAGTGGTTGTGGACACACATGACCCCACAGCAGAAATCAAGCTCTCCCATCTCCTATCTTATTGGCAGGCACCCAGAACTGATGAACTGATCATGCAGATGATGTGAGTAGCCATTGCATAAGTATTCAGATTTCAGTAGGCTTGTTATTTCTGGTGCATTCACTTCAATGACAAGGAGAATTAAGTCCNGATTATCCTGAATCNCATTAACTGGTTCATTCCTGCGTNNATTTCT | |||||||||
gi|67555448|gb|DR096093.1|DR096093 STRR1_25_E04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone STRR1_25_E04_A033 5', mRN TCCATACACAAACCATTGGAA EST sequence (targeted fragment marked with yellow): ACTGGGCACTCACTACAGGCTACTAGTTGAGCCACTGGACATCGCGAATTATTACAGGTTGGGAAAAAACGAAGACTCTGGGCCTTATCTCAGAAATGCCAGGCCTCGTCGTTATACAATTCTCCAAAAGTGGTTGGAAGAAAATAATGTGATTCAACAGCAGCAGCCATCCCCTACAGGCTCTGATCAGCCCACGATGCTCACTCAAGACTCCTGTCTCTGGGCTCATGTTGAAGAAATTGCATGTTTAACGCTTGCTAATAATGCAGGGGGTCATGAAAACTCCATAGCAGGATTGGAAAAGTCACTGAGGCCTTTGATTGATTCCAATGTTTTGTCTATGGAAGAACTTTTAACGCTTGCTAATAATGCAGGGGCTCATGAAAACTCCATAGCATGATTGGAAAAGTCACTGAGGCCTTTGATTGATTCCAATGGTTTGTCTATGGAAGAACTTGTGGCTGGCAACTCTACCTTCAACAGTGTGGTGAAGTGGTTGTGGGCAAACATGACTCCACTGCAGAAATCAACCTCTCCCATCTCCGATATTATTGGCAGGCACCCAGAACTGTTGAACTAATCATGTAGCTGATGTGAGTAGCCATTGCACAAGTAGTACATATTAGAGTAGTCTTGCTGTTT | |||||||||
gi|74163215|gb|DT633146.1|DT633146 EST1148077 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFR80 3' end, mRNA TCCATACACAAACCATTGGAA EST sequence (targeted fragment marked with yellow): CGGCCGGGGATCTCTTATGCTGCAGTTGAACAGTTCTCGCCTCCGAAGATCGCTCTTCTTCTGTGAACAGCCCATCATCCATTTTGCATACCTTAGCAGCTATTTCAGAGAGCATCATATTATTTCATGGCGACGATCAAGGTACACGGCAATCGCTTATCCACAGCCACCAGATTGGTTCTCTCCTGTTTAGAGGAGAAGCAAGTTGATTACGAGCTCGTTGTCGTCGACCTCGCTGCTGGTGCTCAGAAGCAACCCCAATATCTCGCTCTCAATGTAAGAAAAACCTATTCACTTTTATTTATTGATAGTGATTTCAAATAACATAGAATTGTTTTGATGTTTTAATGGTTGAGTATGGTGGTTTAATATTGTTTTGATGTTTTAATGGTTGAGTATGGTGGTTTAATATTGTTTTGATGTTCTAATGGTTGAGTATGGAGGTTTAGTATGCATTTAATTTTGAATAAAATTATAGTTGAATATAAAGGTTATCTTTTTATTGATTAAGATAATGGTTAAGTGTGGAGATTTGGTCTGTAAGATAATGGTTAAGTGTGGAGATTTGGTCCCTCGTATGTATAGCAGTGTATCAATGTGGAGATTTGGTCCATAATGGTTAAGTGTGGAGATTTGGTCCGTAAAACAATGGTTAAGTGTGGAGATTTGGTCCCTAGTATATCAGTGTGGAGATTTAATCCCCTAGTATATCAGATCTAACCTTGAGTAATGATATACTAACCTTGAGTAAAAAATAAAACTAGATCTAACCTTGAGTAAAAAATAAAACTATATATATACATGAGAACTACTCAAAAAAATAAACTATTTTGTTCTTAATCAACATTTTCCCCGAGCCGAT | |||||||||
gi|21823686|gb|BQ698370.1|BQ698370 NXPV_069_B02_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda cDNA clone NXPV_069_B02 5' TCCATACACAAACCATTGGAA EST sequence (targeted fragment marked with yellow): CGCGAATTATTACAGGTTGGGAAAAAACGAAGACTCTGGGCCTTATCTCAGAAATGCCAGGCCTCGTCGTTATACAATTCTCCAAAAGTGGTTGGAAGAAAATAATGTGATTCAACAGCAGCAGCCATCCCCTACAGGCTCTGATCAGCCCACGATGCTCACTCAAGACTCCTGTCTCTGGGCTCATGTTGAAGAAATTGCATGTTTAACGCTTGCTAATAATGCAGCGGGCTATGAAAACTCCATAGCAGGATTGGAAAAGTCACTGAGGCCTTTGATCGATTCCAATGGTTTGTCTATGGAAGAACTTGTGGCTGGCAACTCTACCTTCAACCGTGTGGTCAAGCGGTTGTGGGAAAACATGACTCCACTGCAGAAATCAACCTCTCCCATCTNNGATGNNNNNNNCNNNNNANCAGAACTGATGAACTAATCATGTAGATGATGTGAGTAGCCATTGCACAAGTANNACATATTAGANNANAAGTAGTACATATTAGAGTAGTCTTGC | |||||||||
gi|15144637|gb|BI397573.1|BI397573 NXPV_101_A09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda cDNA clone NXPV_101_A09 5' TCCATACACAAACCATTGGAA EST sequence (targeted fragment marked with yellow): CAAAACTCTTGAAAAGTGGTTGGAAGACAATGAAGAAACTAAGCAACTGCAACCACCCACGATGCTCACTCAGGACTCGTGTCTTTGGGCTTATGNNGAAGAAATTGCATGCTTAAAGCAAAAGAACAATTATAACGATGAAAAAAGAACAGAATTGGAAAATCGTGNNANNCCTTTGATGGNATCCAATGGTTTGTGCATGGGAGANCTCATGACTGGCGAATCCACCTTC | |||||||||
gi|47579227|gb|CN784582.1|CN784582 EST783273 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone PIAAN80 5' end, m TCCATACACAAACCATTGGAA EST sequence (targeted fragment marked with yellow): CATGTTGGCAACTATATTGATTATCGGCCTCACTGCTTGCAAGGTTCGGCACGGTGAGGGCGGTGGTGCCGGAGCTGGTTTCGGTGCAGGCAGCGGCTCTGGTTACCGCACTGGTGGTGCTTCTGGTGGTTTGGGAGCTGGATATCGATCAGGTGGCGGCTATGGATACGGTGACGAGAGCGGCGTTGCCCGTGAGCCTGCTATTCCGTATGGATCCGGTGCCGGTGACGGGAGCGGCGTTGCCCGTGAGCCCGCTGTTCCATATGGATCCGGTGCCGGTGACGGGAGCGGCGTTGCCCGTGAGCCCGCTGTTCCATATGGATCCGGTGCCGGTGGTCCTACTGGTGGTTCCGGTGCTGGCTACGGATTTGCCCGTGAGCCGGCGCCCCCATATGGATCTGGTGACGGTGGTGTTACTGGCGGTTCCGGTGCTGGCTACGGATCTGGTGGTGGATATGCTGTTGGACATGGTGGCGGTGCTCGGGGCGGCTCTAGGTCTGGGTCTGGCTTCAGCTATGGAGGTGGTGCTGCTGGTCGTGGTAGTGGTGGTGACGGCAATGGTGGCTACTAGGCGTCTGTCACTGCCATAATATTTTATTATATTACATGTATTTAGTTATGATGCAATAGCGATCAAAATAAATAGAAAATCCATAGTATTGAGGATATGTTTGTTGAAGCTTGGAAAACGCCATGATTATCTGCTAGAATTCGCATTACTTCAACAAAGGAAAGAGGATTATTACGCTGGTTTGTCTATGGAATGGAATGTCCTGATG | |||||||||
gi|67958573|gb|DR161989.1|DR161989 RTFE1_15_C08.b1_A029 Roots minus iron Pinus taeda cDNA clone RTFE1_15_C08_A029 3', mRNA seque TCCATACACAAACCATTGGAA EST sequence (targeted fragment marked with yellow): TTCCGAATGGCACTGGATACTACGACTCGTTCAAAAGAAGCAACATAGAACAGACTTTGATGCTAACCTTAACAGGCTGAAGCTGGCAGGCTGGTTGGACGAAATCATAACGATGATCAGTAAGGATGAGTTACCGGACGATTTCCAGTGTAGTGAAGTGTGGATAAAACTGGGCACTCACTACAGGCTAACTAGTTGAGCCACTGGACATCGCGAATTATTACAGGTTGGGAAAAAACGAAGACTCTGGGCCTTATCTCAGAAATGCCAGGCCTCGTCGTTATACAATTCTCCAAAAGTGGTTGGAAGAAAATAATGTGATTCAACAGCAGCAGCCATCCCCTACAGGCACTGATCAGCCCACGATGCCCACTCAAGACTCCTGTCTCTGGGCTCATGTTGAAGAAATTGCATGCTTAATGGGTGCTGATAATGCAGGGGGTCATGAAAACTCCATAGCGGGATTGGAAAAGTCACTGAGGCCTTTGATTGATTCCAATGGTTTGTCTATGGAAGAACTTGTGGCTGGCAACTCTACCT | |||||||||