| mature miRNA: TCCATCGGTGATTCCCTCGG species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|24074814|gb|BU883290.1|BU883290 UM88TF06 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence TCCATCGGTGATTCCCTCGG EST sequence (targeted fragment marked with yellow): CCGCCCATGCAAACACTCCATTGTTTATCAACTTAGGTGACCAACTCTGAGGTAATCACCAATGGCGAAATACAACAGTGTGTCGCACCGTGTGTTAGCTCAAACACATGGTACCAGGATGTCCATAGCATCATTCTACAACCCGGGAACTGATGCTGTCATCTACCCAGCACCAGAACTGGTTGAGAAACAAGAAAAGGAAAGCCAAATCTACCCGAAATTTGTGTTTGAGGACTATATGAAGCTCTATGCAGGCCTCAAGTTCCAAGCCAAGGAGCCAAGGTTTGAAGCTATGAAGGCTGTAGAATCCACAATCAACATGGGTCCAATTGCAACTGCTTAGAGAAATGGAAGTGGGTGCTGTGTTTGTGCTGATGAGGAGTGTTGAGGTTCTAGTGTTGGGATAAATCAAGTCTTAATTTATCTATATAAGCTCT | |||||||||
gi|24072464|gb|BU880940.1|BU880940 UM56TG06 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence TCCATCGGTGATTCCCTCGG EST sequence (targeted fragment marked with yellow): AAGGATGCCTGTGAGAACTGGGGCTTCTTTGAGCTATTGAACCATGGCATATCCCATGAGTTCTTGGACACCGTAGAGAGGATGACAAAGGAGCACTACAAGAAATGCATGGAGCAAAGGTTCAAGGAATTGGTGGCAAGCAAAGCCCTTGACGGTGTCCAAACAGAGATCAAAGACTTGGATTGGGAGAGCACCTTCCAGTTACGCCATCTCCCTAAGTCAAACATTGCTGAGATCCCCGATCTCGATGATGAATACAGGAAGGTGATGAAAGAATTTGCATTGAAGTTGGAGAAACTGGCAGAGGAGCTCCTGGACTTGTTATGTGAGAATCTTGGACTTGAAAAGGGGTACCTCAAAAGGGCTTTCTATGGATCAAACGGTAGTCCAACCTTTGGCACCAAGGTCAGCAATTATCCACCATGCCCCAAACCAGACCTGGTGAAGGGTCTCAGGGCCCACACCGACGCTGGTGGCATCATCTTGCTATTCCAGGATGACAAAGTCAGCGGCCTCCAGCTTCTCAAGGATGGCCAGTGGATTGATGTGCCCCCGATGCGCCACTCCATTGTTGTCAACCTTGGTGACCAACTCGAGGTAATCACCAATGGCAAGTATAAGAGTGTGGAG | |||||||||
gi|52496121|gb|CV243146.1|CV243146 WS02518.B21_A11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02518_A11 3', mRNA sequence TCCATCGGTGATTCCCTCGG EST sequence (targeted fragment marked with yellow): CATAAACCATACTCTTTGATCCCCAAAGAACATAGGTTGAAAATAAAAACATGTGCCAAATTCGACCCTTTTGAGATCTTGGGAGGCAGAGGGCTCTGCAATGGAGAAAAAGGCGTGCAACAAGAGCTACAGAGAAACATTGAAGAGGAGGCACCACCAGCTGCTGGTGAAGAGGAGTATTCAGGTAACTTGGAAATATCAAGTGTGCCGGAAGATGGTTTCGAAAAGGAGCTGATGGGATTAACAGGGGGCTTTCCTGGTGGAGAGAAGGGATTGGAAAAATTCATCGAGGAAAACCCCCCTCCAAAGAAACAACCAGCTGCGAAGCTTACAATCACAAACAAGCCAAAGCCACCAGAATTGCCACTGTTGTTGCCTGGTATGATTGCCATTGTGAAGAACCCAAATAACCCATTTTACATGTACACTGGCATTGTTCAGGGAATCACTGATGGAAAAGCTGGGGTTATCTTTGAAGGAGGAAACTGGGATCGGTTAGTAACTTTCCGCCTGGAAGAGCTGGAGCGTAGGGAGAAGGGCCCTCCAGGCAAAAATCCCAGGTCCGCAATAATTGAAGAATTTTATGGAACTGAATCATAATCGACCACCTGGTTGCATTTTCCTGTTGCAAATAATGTTTGTTCATTTGCTTTATGTATGTGCCAGTTCCAGTTTAGACAGGGCAATAAACTCCATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA | |||||||||
gi|73873884|gb|DT476622.1|DT476622 WS01230.B21_D21 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01230_D21 3', mRNA sequence TCCATCGGTGATTCCCTCGG EST sequence (targeted fragment marked with yellow): GGTGGCAAGCAAAGCCCTTGACGGTGTCCAAACAGAGATCAAAGACTGGGATTGGGAGAGCACCTTCCAGTTACGCCATCTCCCTAAGTCAAACATTGCTGAGATCCCCGATCTCGATGATGAATACAGGAAGGTGATGAAAGAATTTGCATTGAAGTTGGAGAAACTGGCAGAGGAGCTCCTGGACTTGTTATGTGAGAATCTTGGACTTGAAAAGGGGTACCTCAAAAGGGCTTTCTATGGATCAAACGGTAGTCCAACCTTTGGCACCAAGGTCAGCAATTATCCACCATGCCCCAAACCAGACCTGGTGAAGGGTCTCAGGGCCCACACCGACGCTGGTGGCATCATCTTGCTATTCCAGGATGACAAAGTCAGCGGCCTCCAGCTTCTCAAGGATTGCCAGTGGATTGATGTGCCCCCGATGCGCCACTCCATTGTTGTCAACCTTGGTGACCAACTCGAGGTAATCACCAATGGCAAGTATAAGAGTGTGGAGCACAGAGTGATTGCTCAAACGGATGGCACTAGGATGTCAGTAGCTTCTTTCTATAACCCTGGAAGTGAAGCAGTTATCTATCCAGCACCAGCTTTGGTGGAGAAGGAAGCAGAAGAGAAGAAAAACGTGTACCCAAAATTTGTATTTGATGACTACATGAAGCTGTATGCTGGCCTCAAATTCCAGGCCAAGGAGCCAAGATTTGAAGCCATGAAAGCTGTAGAAACCACTGTCAATCTGGGTCCAATTGCAACTGCTTAATCTTCTTCGAGGAGGATTTGGAGTCGTCTTATTTTTATTTTTTAAGAGTCGTCCAAGGTCTTTCTAGTAGATTCTGTTGCTTCCATAAAGATATCAGTTTCGTGTAGTACCGAGTGTCAATTTGTTCCATGTAGAAAATTACCTTGATTACTATATTATAAATAAACATTATTTCACGAAAAAAAAAAAAAAAA | |||||||||
gi|73889771|gb|DT492509.1|DT492509 WS02550.C21_O22 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02550_O22 3', mRNA sequence TCCATCGGTGATTCCCTCGG EST sequence (targeted fragment marked with yellow): CCCCAAAGAACATAGGTTGAAAATAAAAACATGTGCCAAATTCGACCCTTTTGAGATCTTGGGAGGCAGAGGGCTCTGCAATGGAGAAAAAGGCGTGCAACAAGAGCTACAGAGAAACATTGAAGAGGAGGCACCACCAGCTGCTGGTGAAGAGGAGTATTCAGGTAACTTGGAAATATCAAGTGTGCCGGAAGATGGTTTCGAAAAGGAGCTGATGGGATTAACAGGGGGCTTTCCTGGTGGAGAGAAGGGATTGGAAAAATTCATCGAGGAAAACCCCCCTCCAAAGAAACAACCAGCTGCGAAGCTTACAATCACAAACAAGCCAAAGCCACCAGAATTGCCACTGTTGTTGCCTGGTATGATTAAAAAAAAAAGAACCCAAATAACCCATTTTACATGTACACTGGCATTGTTCAGCGAATCACTGATGGAAAAGCTGGGGTTATCTTTGAAGGAGGAAACTGGGATCGGTTAGTAACTTTCCGCCTGGAAGAGCTGGAGCGTAGGGAAAAGGCCCCTC | |||||||||