miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TCCCGGTTTTCCAACCGGGAG
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|88738362|gb|CI761870.1|CI761870 CI761870 Oryza sativa (japonica cultivar-group) root of seedling 2ppm NAA(naphthalene acetic

TCCCGGTTTTCCAACCGGGAG
||||..|||||||| ||..|.
AGGGTTAAAAGGTTAGCTTTT

EST sequence (targeted fragment marked with yellow):
GAGAGCAGCAATAGAGAGGAGGAGAGGGAGATGATGGCCCATCTCCTTCTCCTCCATCCACCTGCCAGCTCGAAGATTTCTGTCTGAATCGATCGGATCAAGATCAAATCAAGGAGGGAGGAGGTTGAGCAATTCCTGACAGGGACAGATCGGGAAAGCTCTCACAGCTTTTTCTTTGTTTTTGTTTGATTTGTTCCTGCTTTTCGATTGGAAAATTGGGAGGGGAGGAAGGTGATAGCCATTGAGGTGGTGGCATTTGCTGTCACCACCTTTAGCTATCGCCTTCCTCTTCCTCGTCTCGCTCGCCCCCCGGTCTAGCTTCTTTCTGCAGGGCCGGACGGAAAAAACAAAACAAAAGAAGGCACCAGCCAGCC



gi|88525028|gb|CI453996.1|CI453996 CI453996 Oryza sativa (japonica cultivar-group) young ear Oryza sativa Japonica Group cDNA cl

TCCCGGTTTTCCAACCGGGAG
||||..|||||||||||..|
AGGGTTAAAAGGTTGGCTTTA

EST sequence (targeted fragment marked with yellow):
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGAGTTACAAGTTAAATAAAAGTGTAATAATGATTTTGTTCAAATACTCCCTCCATCCAAAAATATAGAAAAATATTAAAACTGATGGAAAGAATANTATTCAAAAAAATTTGGCTACCCCTTTTTCAATAATCATGGGATTATTTTTCCATTCCAAGTTTGTTATTTTTTGAAAGGGGGGAAATATTTAACCTGGATTTTTTGCCAAAAAAAAAATCGAAAATGGGGGGCCAANTAAAAGCCAAAAATTTCGGTTGGAAAATTGGGAATCGAACACAAATTTTTTTGAAATTTTGCAAATTCATTTGCAAAAATCCTGGGGGGAAAAAAAAA



gi|117221580|gb|CT859095.1|CT859095 CT859095 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD

TCCCGGTTTTCCAACCGGGAG
.|| |||||||||| |||||
GGGCCCAAAAGGTTTCCCCTC

EST sequence (targeted fragment marked with yellow):
CTGTTCGCCGCCGCCGTGCTCCAGCGCCTAGGGTTTTCTTCGCCGCCGGCGAGTGCTCCAGCTCCTAGGGTTTCTTCACCGCCGGCGAGTGCTCCAGCTCCCAGCCCTGCGCGTCCTCCTCGCCGGACGCTGCCGGTGACGTCTGGGCCAAGCTAGGTCTGTAGTGCCCTCCGATTCCGTGTTCCCGGAGGTGGAGCTGGCCGAGGACGACGCCGTGGTGTGCTCCCGGGTCACCCCGGATGGCGGCGGGGAGGTGGTCGCGTGGTGCAAGATTAGGCGCGGCGGCGACGTGTCGGCGGCGACGATTTGGAATCTGAGCTTGGATGCAATTATTGTCGATGGAAGAGTTATCCAGCAAGAAGCAGTTGACATCAAACCGGGGAGTGAAATTGTTCCAGGGCCCCAGAAAGATGGGTATCTGTTGTACACCTTTGATATAACTGGCCTGAATGACTAGGACAAAAATAATATCAAGATTGTGCTAGGTATTGAGAATGCAAAGTGCAGCATATGCTTAAATTTGTGCAATGGCTGCTTCTTTGAGTGGTTAAGAAGGTCTTCAGCTAATTCGCGTGATAAAAGTTAGAGTGCTGCCTGTCCACAATGTAGGACGACAGTGCAATTAGTTGGGTGGGAATCACTTCCTGCATAATATGGAAGAGGCTATACTGTAAGTTTTTTCATCGCTACAGCGGTCTGATGAGGAGATGGCATGTTGGAGTCATATGCCCCGGTCAAGACAAATATTCTAATCAAGGGCATCTACACCGTCCGATGTACCACGCGGCAACGATCCGTCCCCTCTTCTGGCTCTACCCTCCCGTGAGCTCGTGGTTGAAAGTTACATTTGTCATGATTTGGGATTATCTTCTTATTTGAAGATATCCTTGATTGATAAATGACTGCCATGTTTCAAATAAAATTTTATTCCTTATTTCCCCCAATTTCCTCCCCTTTGGAAAACCCGGGGGGGGGGGGTTTGTGTGGTACGCCCTTTTGCAACACTATATTTTAATTTAAAAAAAATTCGCCGGGGGCCCAAAAAAAAAAAAA



gi|29664345|gb|CB660620.1|CB660620 OSJNEd02J10.f OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd02J10 5', mRNA sequence

TCCCGGTTTTCCAACCGGGAG
|| |||||||||||||||.|
AGAGCCAAAAGGTTGGCCTTA

EST sequence (targeted fragment marked with yellow):
CTCACACAGATCAAATCTCTCCCCCTCTTCCCTTTCCTCCTCCTCTCCTCTCCTACAGTCTATCCTCTCTTCCTCATCCCCTCTCCTCCACCTCCTGCCCTTCCTCCTCTCCTCCCCCTCCTCCCCTTCCCATCCGGCGGGCCGGCGGCCGTGGCGAGCAGTGGCAGCGGCTTTGTTTGTCTTTTTTTATATAATCTGTGATTCACTAAGATGTTTAAATTTGTGATTCAATGCATGGATCTGAGATGTATAATCTGTAATGTATTTGATTTGTGTGTAATTTTTTAGGATTTGTGATGTATTTGATTTTTGTGTATAAGTAACTTTAAGATTTATGATGTAGATTTGGGATGTTACATTGATTTGGGGATTTAGGGTTTGATTTGATTTGGGGATTTGGGGTATGATTTAGGGATATGCATGCCACTTGATTCGGGAGAAAATAAAAAAAGAAAAAAAAGAAAAGGGGATCATCTGGTACTGCCGCTATTCTTTCTTTACTCTCGGTTGATAACATCAACCGGGACTAAAGATCCCTCTCTTTAGTCCGGTTGGTCCATCTTTAGTCTTGGATTCCTATTCCGGTTGGAAAACCGAGACTAAAAGGGTTACTAACCGGGAGTAAAAATAGTTTCCACCTATATATAAAGTAAAATATATGACTGATTCAATATGTCATCTGAGGTCCAACGTGTAACGATCGATCGAATCGCCATCGTAGCACCCACTGTGGCGAGAAATTTGTATTTAGACCCCTCGTGCTATATAATATGCCTTCAAGTCAACTTCCAAACACTCCCAGACCTTTTGAGAAAAAAAATTCAAAAATATACTTTTTTTTTCATTGGG



gi|86869794|gb|CI316522.1|CI316522 CI316522 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone

TCCCGGTTTTCCAACCGGGAG
| ||||||||| ||||||||
ATGGCCAAAAGATTGGCCCTG

EST sequence (targeted fragment marked with yellow):
AGGGACTAAAGATTTAGTCTCTTTATTTCAACCGGGACTAAAACTGGACATCTTTTAGTCCCGGATTCGTAGTCCCGGTTAGAAAACCGGTACTATAGGGGGTTCCTAACCGGGAGTAAAAAGCGTTTCTCCAGTAGTGAATCTGTTCACAATATAGTCACATAGTTATATTGAGTAATATAAATAGCATACTACATTTTTTTCTCGCTGTTTTTCAGTGCACCAAGCAATATTACAATATTAGATATACTATTTTCCAACAAGAATCACGAGGGGGCGCAAAGGTTCTCTATGCCATGAATGACTTTAGTGTTGCACCTAAATGTCATCCCCTTACGTTTGGGCTTGACTATTTCAAGAAACTTGATAATCACTACAACCCTAGTCTATAGGTCATAATCATACCACAAAGTACTGCAAGATGTACCCATTTTGACTGACCTGTTTCCACTTCAACTAACTCACCCACTAACTTTCTCGCCCCTAAGTGTTTGGGTCCTTCAGGTTGACTC



gi|86498997|gb|CI141630.1|CI141630 CI141630 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa

TCCCGGTTTTCCAACCGGGAG
|||||||||||||||||||||
AGGGCCAAAAGGTTGGCCCTC

EST sequence (targeted fragment marked with yellow):
GTTGGTGTCACCAACCAGGACTAAAGATGGATCTTTAGTCCCGGTTATTTCATCCAGGACTAAAGATAGCGATCTTTAGTCCCGGATTGCTACTCCCGGTTGGAAAACCGGGACTAAAGGGGTTACCAACCGAGAGGAAATATGGTTTCTCTACCAGTAATACAATGTTACCTATCATTTGCATGCGACTTAAATAGTTATAAAAAAATTAAAAAACTTTAGTAGCATCGATTGTGATGATATAAGTCTATACGCAAATATGCATGACTAAATTTGATCTACAATTAGAGAAAAAAATAATAAAATTAAATAGTGAAAAGTACCCTTACAACGCAGATAAAATTTGTTATTTTGGTTACTTCATATGTTGATCGAATTTGGACTTGCATGTTTGTATAGTGTCTTATATCTTTATAATCTATCTTATCAAATTTTATAAAATTTTTATATAACTGTTTAAATTACATGCCTACACCTATGTGTAAAATATACTTACCCGTAATAAGGTTTCGCTCTATTTTCAGTTACTTGATCAAGTTCGTCCATTTTTTTGCTTTAAAAGAACCAGCACAACAGTACATGCTAATTAAACACCTTCATTAGTACGTACAGCGC



gi|88395777|gb|CI590792.1|CI590792 CI590792 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone

TCCCGGTTTTCCAACCGGGAG
||||..|||||||| ||..|.
AGGGTTAAAAGGTTAGCTTTT

EST sequence (targeted fragment marked with yellow):
GATAGAGCAGCAATAGAGAGGAGGAGAGGGAGATGATGGCCATCTCCTTCTCCTCCATCCACCTGGCAGCTCGAAGATTTCTGTCTGAATCGATCGGATCCAGATCAAATCAAGGAGGGAGGAGGTTGAGCAATTCCTGACAGGGACAGATCGGGAAAGCTCTCACAGGCTTTTTCTTTGTTTTTGTTTGATTTGTTCCTGCTTTTCGATTGGAAAATTGGGAGGGGAGGAAGGTGATAGCATTGAGGTGGTGGTATCTGCTGTCCCCAACTTTAGCTATCGCCTTCCTCTTCCTCGTCTCGCTCGCCCACGGTCTACCTTCTTTCTGCAGGGCCGGACGGAAAAAAAAAAACAAACGAAGGCACCAGCCAGCAATGGCGATGGTGCTGGCCTCTTTCGTAATCCGGTGCACGGGGTCGTTGGAGGACTTCGC



gi|88399905|gb|CI585824.1|CI585824 CI585824 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone

TCCCGGTTTTCCAACCGGGAG
||||..|||||||| ||..|.
AGGGTTAAAAGGTTAGCTTTT

EST sequence (targeted fragment marked with yellow):
GATAGAGCAGCAATAGAGAGGAGGAGAGGGAGATGATGGCCCATCTCCTTCTCCTCCATCCAACTGCCAGCTCGAAGATTTCTGTCTGAATCGATCGGATCAAGATCAAATCAAGGAGGGAGGAGGTTGAGCAATTCCTGACAGGGACAGATAGGGAAAGCTCTCAAAGATTCTTCTTTGTTTTTGTTTGATTTGTTCCTGCTTTTCGATTGGAAAATTGGGAGGGGAGGAAGGTGATAGCCATTGAGGTGGTGGTATTTGCTGTCACCACCTTTACCTATCGCCTTCCTCTTCCTCGTCTCGCTCGCCCCCCGGTCTACCTTCTTTCTGCAGGGCCGCACGGAAAAAACAAAAAAAAAGA



gi|88555731|gb|CI486009.1|CI486009 CI486009 Oryza sativa (japonica cultivar-group) 15 days after pollination pistil Oryza sativa

TCCCGGTTTTCCAACCGGGAG
||||||||||||||||||||
AGGGCCAAAAGGTTGGCCCTG

EST sequence (targeted fragment marked with yellow):
CGGGAGAAAATACATAGATTAACACTAGCCATTAGCAAATCAACAACAAAATAATAATAAAAAAAATCTCGAGGAACTGTCGCTTCCCCTCTTTAGTCCCGGTTGGTAGATTCCCTCTCTTTACTCCCGGTTGGTGTTACCAACCGGGACTATTATTTGAACCGGGACTAAAGATAGCGATCTTTAGTCCCGGATTCGTAGTCCCGGTTGGAAAACCGGGACTAAAGGGGGGTTATCAACCGGGACTACAAACGGTTTCTCCACCAGTGTGAGATGCACACGATAGTATGCATCATACACTTGTTATTTGACTATACAAGTAATTGAAATTCGATCAACAACAACCATAAGGAAAGAGTTGAAAGTTGGCGGGTGCCATGTTGCACACATATGGCAGTTGCAT



gi|86505751|gb|CI148384.1|CI148384 CI148384 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa

TCCCGGTTTTCCAACCGGGAG
|||||||||||||||||||||
AGGGCCAAAAGGTTGGCCCTC

EST sequence (targeted fragment marked with yellow):
AATTGTGATGATTCACTGAGATGTATTTATCCGAGAAGTTACAAATTTGTGATTCATTGTTTGGATTTGTGATGTATTTGAGTAATTTCTTAGGATATTGTGATGTATTTGATTTGTGTGTATAAGTAACTTTATGATTTGTGAGGTGGATTTGGTGTTGTGAATTTGGGATGTTAGTTAGATTTGGGGATTTGCCTACTTGATTCGGGAGAAAATAAAAAAAAAGAAAAAGAAAAAGGGACCATCTGCACTACCGCTATTGTCTGTTTAGTCCCGGGTTGATCCCTTCTTTTTAGTCCTGGTTGGTGGCTAAGGATACATCTTTAGTCCCGGTTAGTCCCGGATCCTTACTCCCGGTTGGAAAACCGGGATTAAATGGATATCCAAGCGGGAGTAAAGATGGTTTCTCCACGAGTGTAGGGTGATTTGTGAAACCAGCTAATTATAATTTAAATCGATAAATAAAAGAATTAGTGATGATTAGCGCTTGGGTGGGAGGCGGGAGGAGTGGGTGGAGGTG



gi|87014168|gb|CI273358.1|CI273358 CI273358 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo

TCCCGGTTTTCCAACCGGGAG
|||||||||||||||||.||
AGGGCCAAAAGGTTGGCTCTG

EST sequence (targeted fragment marked with yellow):
TTTTTTTTTTTTTTAATTCCGGATTCGTAGTCTCGGTTGGAAAACCGGGACTACAAAGGGTTCTAAACCGGGAGTAAAGAGCATTTCTCCACCAGTGATATACATACAAATTCAACTGCACTTAGCCATGCCAAAATGCACGAGTATTTTGTTTGCAACATCGTTCCTTCAGCTTGCTTTACAACAAAATTTGAGCCTATGAATTGAACGAATGACGACGAATCCTTTACAACAGCGGACTCAACTCTCAAATTCGAGCTCCCTCTACATACATACAAGAAACAACAAACACCATGGAATCCAATTACAAACTGCCAGCAGCAACAATCTACTTGAAGAATATGCCCTTCCTTCTTCCTTTACTCTTCTCAACTGCCTTCATTCTGAACAGCCTCAAGATTAGAACAATGGTATCTCGTGATGGCGCATTCTCTGCAGGCTTGAGATTGTATTCAGCACCATCAGCAGCCAATATAGAAAATTCAGTAGGACGCCCATATGGGATATTGATAGCAGTGGCTTGCTGGAATTTTTCTGTAATAACAACACCACGCTGGCCATTACACTCAATGCTGTAACCTTCCCTCTTTATTGCCAATACAGCTGGTTCCCACATATCTAGAAACCTAACAGGCAGCAGAACTTCATAG



gi|89161954|gb|CI102302.1|CI102302 CI102302 Oryza sativa (japonica cultivar-group) Panicles one day after flowering Oryza sativa

TCCCGGTTTTCCAACCGGGAG
|||||||||||||||||||||
AGGGCCAAAAGGTTGGCCCTC

EST sequence (targeted fragment marked with yellow):
TTTCCCGGTTGATCCCTTCTTTTTAGTCCTGGTTGGTGGCTAAGGATACATCTTTAGTCCCGGTTAGTCCCGGATCCTTACTCCCGGTTGGAAAACCGGGATTAAATGGATATCCAACCGGGAGTAAAGATGGTTTCTCCACGAGTGTAGGGTGATTTGTGAAACCAGCTAATTATAATTTAAATCGATNAATAAAAGAATTAGTGATGATTAGCGCTTGGGTGGGAGGCGGGAGGAGTGGGTGGAGGTGGAGGTGGTGGAGTAGTCGTCGGTGTAGTCGCCGCTGTCGAAGGCCACCTGCCGATGCCGCGAGATCTCCGATGAGGCGGAGAAGTCGTCGTCGTGGTGGTGGTCCAGCGAGAGCGAGGCGTCCCCCTCCAGCGCCCTCACGATCTGGCTCATCTTGGGCCGCTGCCGCGCCGAGTGCCGGATGCTCGCCGCCGCGCACGCCGCCATCCTCTCCACCTCCACCGCCGAGTACTCCCCGCCCAGCCGCGAGTCCACCAGCTCCCGGAT



gi|29664347|gb|CB660622.1|CB660622 OSJNEd02J11.f OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd02J11 5', mRNA sequence

TCCCGGTTTTCCAACCGGGAG
|| |||||||||||||||.|
AGAGCCAAAAGGTTGGCCTTA

EST sequence (targeted fragment marked with yellow):
CCTTTAAGACAGATCAAATCTCTCCCCCTCTTCCCTTTCCCCTTCCTCTCCTCTCCTACAGTCTATCCTCTCTTCCTCATCCCCTCTCCTCCACCTCCTGCCCTTCCTCCTCTCCTCCCCCTCCTCCCCTTCCCATCCGGCGGGCCGGCGGCCGTGGCGAGCAGTGGCAGCGGCTTTGTTTGTCTTTTTTTATATAATCTGTGATTCACTAAGATGTTTAAATTTGTGATTCAATGCATGGATCTGAGATGTATAATCTGTAATGTATTTGATTTGTGTGTAATTTTTTAGGATTTGTGATGTATTTGATTTTTGTGTATAAGTAACTTTAAGATTTATGATGTAGATTTGGGATGTTACATTGATTTGGGGATTTAGGGTTTGATTTGATTTGGGGATTTGGGGTATGATTTAGGGATATGCATGCCACTTGATTCGGGAGAAAATAAAAAAAGAAAAAAAAGAAAAGGGGATCATCTGGTACTGCCGCTATTCTTTCTTTACTCTCGGTTGATAACATCAACCGGGACTAAAGATCCCTCTCTTTAGTCCGGATGGTCCATCTTTAGTCTTGGATTCCTATTCCGGTTGGAAAACCGAGACTAAAAGGGTTACTAACCGGGAGTAAAAATAGTTTCCACCTATATATAAAGTAAAATATATGACTGATTCAATATGTCATCTGAGGTCCAACGTGTAACGATCGATCCAATCGCCATCGTAGCACCCACTGTGGCGAGAAATTTGTATTTAGACCCCCCGTGCT



gi|117221664|gb|CT852782.1|CT852782 CT852782 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD

TCCCGGTTTTCCAACCGGGAG
.||||||||||| | |.||||
GGGGCCAAAAGGGTTGTCCTC

EST sequence (targeted fragment marked with yellow):
GAACGCCTTCCTCCTCCCCCTCCCGCTCGATCCGCTCCACCCAATTCGCACGCAACGACATGATGCTGCCGCCGACGCCGACGCCGCCGCCGCACCTCCCCCTCGCCGCCTCCACGGCCGTTAGCTTCACCCCGCGCGCCGCCGCCCAGCGCGGCCGCGGCCGCCGATCGAAGCCCAAGCCCAAGCCCGTCGCGTTCCCGCCGCCGCCGCTGCGCCGCCTCGTCTCGTCCTCCCTCCGCCGCCTCCTCCCGCGGCCGCGCCCCCTCACCGTCCTCTTCCTCGGCGGCGGCGGCGGCGGTGGGGGATGGTTCGGGATGGGGGGAAGGGGGAGGAGGAGGGCAACACCGGCGGAAGAGCTCGCGGCGCTGGCGCTCTCCCTGGCGCTCGGCGACAAGCTGGCCGTCCTCGCCGACTACTGGAACGCGTCGGGCCTCGGCGAGGCGCTCGGCGTGTGGGCGGCGGTGTGGAGGAGAGGAGGAGGGAGGAGGAGGCTAGGCGGCGGTCACCGGGGGCGCGCGGAGCTGCGGCTGGGGATCATATTCTGCGCCTTCGTCTGCCCTTTGGAGGGAGCCGCGCTGCGCAAGGGCCTCGCGAGGACGGTCGTTGGCTGGAACAAGTTTGAATGATCCTGCATTGATTTTTTTGTTGATGAATGATTGGATTTGTGTTTCGAATTCGTGAGACGAGGGTTTTGCCCCTGAGTGGCTGATTGCGGCGTCGGGAGCTGTAGGCACCTCGTGTGAATGGGGTAGTGTTCTTGGAAAAATCGTTCACTTTCATTGTGAAATGGAGACCGAGTAATTAATGGGAGATGGAAACGAAAGATGTGGCAACTCGCCTATTCGAGAGGTTCATTTCATTTAGGCAAAACAAAAAAAAAAAAAAGCAGTCTGGCCCGGGGGGGGGCGGGACCCCATTTTCCCATATTGATCGAGTTCGGGGGGGGGGTGCCGTGTTTTACATCTCCTGTTGGGAAAACCGGGGCCTTCCTCTCAATTTTCTTTTATCTCTCCCTCTTTTCCGGGGGGTATTTAAGAAAGACCCCGGATCCCCCTTCCTCTAAATTGAAGGCGTTTAGGGAAAAGAAAAACAAGGTAAGAGGGGATAGATCCGAGAGGGGGGGCCTTCCTACCAGGGGAATCCCCCCCTTGTAGGGGCTACACCGCCCCCTATCTTTGGTTTTCTTTTTTCTTTTATCCCAACAACATCCCACTCTCCCCGCGCCGCCCGCTCTTAGTTAGGGGGGGG



gi|87031000|gb|CI270148.1|CI270148 CI270148 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo

TCCCGGTTTTCCAACCGGGAG
||||||||||||| |||.||
AGGGCCAAAAGGT-GGCTCTG

EST sequence (targeted fragment marked with yellow):
CCCGGATTCGTAGTCTCGGTGGAAAACCGGGACTACAAAGGGTTCTAAACCGGGAGTAAAGAGCATTTCTCCACCACGTGATATACATACAAATTCAACTGCACTTAGCCATGCCAAAATGCACGAGTATTTTGTTTGCAACATCGTTCCTTCAGCTTGCTTTACAACAAAATTTGAGCCTATGAATTGAACGAATGACGACGAATCCTTTACAACAGCGGACTCAACTCTCAAATTCGAGCTCCCTCTACATACATACAAGAAACAACAAACACCATGGAATCCAATTACAAACTGCCAGCAGCAACAATCTACTTGAAGAATATGCCCTTCCTTCTTCCTTTACTCTTCTCAACTGCCTTCATTCTGAACAGCCTCAAGATTAGAACAATGGTATCTCGTGATGGCGCATTCTCTGCAGGCTTGAGATTGTATTCAGCACCATCAGCAGCCAATATAGAAAATTCAGTAGGACGCCCATATGGGATATTGATAGCAGTGGCTTGCTGGAATTTTTCTGTAATAACAACACCACGCTGGCCATTACACT



gi|117210194|gb|CT857409.1|CT857409 CT857409 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD

TCCCGGTTTTCCAACCGGGAG
||||||||||||| ||..| |
AGGGCCAAAAGGTGGGTTCCC

EST sequence (targeted fragment marked with yellow):
ACACGCTCACACCTTCACAGACAGACAAGACGAGTGAGGGGGAAGAAGTGCTTGACTTCACCACCAATGGCGGCTGCTGCGGCGGCTGCTCTTGGCCTTCGTCGTCGTCGCCGGCGCCTTGGTTGCCCACGCAACCGACCCCTACGACTTCTACGACTGGGACGTCTCCTTCATCAACGCTTCCCCGCTTGGCCTTCCCCAAAATGATATCGCAATCAACAAGCACGTCCCTGGCCCCGACATGAACCTAACCACCCACTACACATGTGCTCGCCCATGTGCTCAACAGCTTGCATGAGCTCATTACTCATGACTTGCGATGGGATCCAGCATAGAAAGAACTGCTGGCAGGATGGTGTCTCTTGGCACAACCTGGCCCATACGCTCCAGGTTGACATCTGGAGCTACGATTTCGGAGACGATGAACAAATTGAGAGCTTCGTTTACTTCCCACCCCTTATGCTGCAGCGCGCTGCTGGAGGTTTCGGACGTATTACTGTCAACCACCGCGCTCGTCTTTCTGTCCCATTCGACACACCAGATGGAGATATCACCTTGCTCATTGCCGACGGCTACAGCAAGAGCGACACCGACCTGAGGAACATGCTCGATGATGTAAAAAAGCTCGGGATGCCTGCTGGAGATCTGATGGATCGCGACGGAGGCGTATAGGGACAATGGATTCCCTCGTCCCAGGATTGGGATTGGAAAGTGGAGACTATTCAAAGTTGGAACCCGGTAAAAAGTGAGCGGGTTTCCTTGGCCCACCAAGGGGGGGGATTTCAAAAAAACCTTGGAACCTTCCAGGAAACCCCAAACCCAAAAATTTTGGGCCCCTTGGGTGGAAAACCGGGAGGGGGTTCTTATCCTTGAAGGGAACCCCAAAATTTTCCGCAAAATCTCTTGGTTCCCCCCATGGGGGGGGAAACCCCCCCTTCCCCCCCCCTGTTTTTTGAAAACCCCCCCCCGGGGAAACTCAGAAAGGCGCGGCCACCCCCGGGGGGAATAAACACACCCCTTTTGGCGGCGCGCCCCAGGGGGGGGGTGGGGGGTTTCTTTGTATTAAAAAGGAAAAAAACCCCCTCGTGGGCGGGCAACCACCAAAAATTTTTTCCCCCCGCGGGGGGGTTTTTTCCCCACCCCCTTTTCGTGCCCCTTATTTTCTTTTCTCAAAAATTTTTTATTTAGAAAGGGGGGGAGAAAAAAAAAAAAAAACTCCTCTTTTCTTTCGGGCGCGGCCCCCCCCCCCTCTCTCTCTTCTTCTCTTCTCCTCTGTTTCATCTCATCCCTCCCCC