| mature miRNA: TCCCTCCGTAAAGAAATATAA species: Leymus cinereus x Leymus triticoides database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|159769222|gb|EG398612.1|EG398612 BG01038B2G01.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TCCCTCCGTAAAGAAATATAA EST sequence (targeted fragment marked with yellow): GCATTTTNNTTTTTTTTTTTTGCAGCAAGCAACATGGTCTTCCACTTAATTTGACAAGTAGCATTCAGACAAACTTATACACAACATAAATTATTCCGTCCTTATCACAATAGCTGATGCATATATACATATAGATATGCCTCAGCTTGTCCTTGCCATGAATACAGAGCACCTAAAAGATGACAAATGAAGCAGGAATTGACGAGCAGACTTTGAGGCATCTGTCTTGTGGAATATATGTGACGGCGCGTCTGCTTCTGCCGTTCTCATCCATTGATGCCGTCACTGCTGGCTCATTCAGATAAGCATAGGTGCTTCTTTTCCACCTGCATCCAGTTGGAGAAGATGGTGGGTCTGTCGATATCATAATCCACATGTACCACCTAATTAAATACTCCCTCAGTGATCTAAACGATCTTATATTAGTTTACAGAGGGAGTACTACTGTACGAAGAAGCTTCCCCGTAGACGTTAAGCATATGTAAGATAGATACGACCAGAAACAATTTTTAGCTAGCGTGTATTTTTGTGGTATGACCGTAATGCCTTTTATTTTCCATTACCTATGTCGTATACTTGTTGGCCATAAGTTATTGTACTAGTACGGCATTGTGAGGTGTGACAGGGCATCCAACTACGGGAAAGGAATTGGATGGGGTGGGATACAGATTGTTTCCCACATCGCACCGGCTACCAGTATACAGCTTTCAGAAAAAATG | |||||||||
gi|159599585|gb|EG395500.1|EG395500 BG01034A2C10.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TCCCTCCGTAAAGAAATATAA EST sequence (targeted fragment marked with yellow): TTGAAAAGAAAACAAGCCTTACGTGATTTNCNNTTAGTACTCCCTCTGTATAAAAGTGACCTAAAACGTCTTACATTTGTTTACAGAGGGAGTATTTCCTTCATGCCACACCACCGTACACACAAGATACAGTGCTTTATCAGGACACAAGCGCACTGACCCCTCTCCGCTTGCTGTTGCCGGTGCTTGCCCATCTCTCTTATTCACCGACGCCGTGTCATTTGCTTCACATCTCCGCTACAAGCCTGGACTGCGCCAGCGCCAGGTCGAATGCAGTGAGAGAGTGAGGAGGCAGCGTGACCTGCATCTCCTCCGCGGCGTCGCGCAACTCGATCGTCACCGGCACAACCTTGTTTGGGTTAGCGAAAGAGTTCTCGTCCATTACACTGCCGGATGTGAGAACAGTCGCGGTGGATCCGAGCGCATTGATGCTGCCCTGGAGCCCAGTTGCTGAGATCGTGAGGCTCACGGCATCTGGCCCGAAGTTCACAATCTTCACTCTTAGGAAGCTGTTCTCGTAATCATGCCACGTGATCGCAGATGCTGCCAGCGAACCAGAGTAGCTTGAACTGACTGTGATGGGATGGATCATAGCGCCGCTTGATTCACGGAAAAGCTTCTGCATCCAGTAACTGGGAGTTCCATATTGCTGCCAGGAGTTGAAGACGATAGCGTCTGGGTTCCACGTGCGGTCGTTATCATTTAT | |||||||||
gi|159629691|gb|EG382756.1|EG382756 BG01017A2A11.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TCCCTCCGTAAAGAAATATAA EST sequence (targeted fragment marked with yellow): GCATTTTTTTTTTTTTTTTTTGATCTAAACGATCTTATATTTCTTTACGGAGGGAGTATGTAACAGCTGTGTGATGTTGGTACAGACCAATGTCCCTTGACGATGAAGAGTGCTGTATGGATACAACAAGTTACAACCAAGGCAAGGAGCTGCTGGCCGATGATTCAGTGAAAAAAACGGCAATATGGGACAGCTACCATAAATTAAGGTGTGTGTCATGCCCAAATAAAATCCGCACTTGACTGACGCGAAGAAACGGTGCACCAGACGCACTTCTCCCTGTCGCCCAAGTTAAGATTAACCAACTCTGGGCAGAGTGCTGCAGTTCTATCCGAATCAGCGTGAAGAAAGCACCCATCTAACAAGGAAAATGTAGGGCCATTTGAGCACTCAGTCGTCTCCAAATAAAGTGGAGAGAACCAGGTCTTGCACAAAGGTCGCCCTGCTAGTGGCTTGTTTCCGCTTTTGTTCCCTTTCCTCGCTTGTGAGGGACGAGTCAATACTTGATTCCCAAGGTTGAGGAGGCGCCTCCTTAAGAATTGAAGTATCGTCGAGAAGCGGAACTGATGATTTCGATGGTTCCTCGGCATCTGATGTTGCAAAGCCCAGGCCAAACGATGAAAGCAGCGGATCAGCATAAATATTTGTAGTGGCGGTGGTGGTGTTCCTTGACCTATGACTATGACCGCCTCCTAGAAGCGCCTGCAAATGAGCATCACGTAGATCTCGGCTCAGTAAAGAAAGTGCACGGCGCTCGGGAATAACGAATCTGCGCAACCGGCTTCCAT | |||||||||
gi|159646592|gb|EG397518.1|EG397518 BG01030B1G03.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TCCCTCCGTAAAGAAATATAA EST sequence (targeted fragment marked with yellow): GCATTTTTTCTTTTTTTTTTTAGCCAAGTGAAAGATGGTGATATACATTAGGTTTTATTGTACTCCCTCTAAAAAAATATAGGATCGTTTAGATCACTACTTTAGTGATCTAAAGGATCTTATATTACTTTACAGAGGGAGTACCTTGTAACAAGTAACAGCCTGCCCCAGCAGATTCAACAAGCCTATCTCATAACCAAACAATCCACAAACAAGTTTGTACAAAAAAAGGCACAACCATAACAAACTTTTCTTGTCATTTTTCAGTGTACAGCAGATAGTATACATAATCTAAACCCAGAATCACATATAGCTAAATTTTAAGCCTGACTTGTTCTTTATTCCATCTTTAGCCACCCCGTGGCTGTAGCGGCAATCCAAACATTGACCACAAACTTATGACAAACTGCCATATGTACCAGAATTTCGTTTAGAACTTTTATAGATTGTTGGATGGTCCAACTGCTGCTTAGATGGCTTCCGCCTGCTCTTCGATCTCGCTGCGTCCAGCATCGCTTGTGGCACTGCCGTTAACAGGCACCTCGGCGGCGACAGAAGGCGAGCTCACGGCACCGTTCACCTGCACTTCACCAGCAGCCTCGGACATGTCGCTTGACGGTTGCTTTGTAAGGGACTTCTGTTGACGGATGGCAGCCGCTGCTTCTGGCATGGCAACACCTGGAGGCTGAGGGGGCACCCATTGACGCTGAGGCGGCGGCCTTTCCACTACACCACTGCTGTATGCCAGCGGCCTGGGCTCCTCTGCATGAAAAT | |||||||||
gi|159748058|gb|EG380425.1|EG380425 BG01015A1C06.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TCCCTCCGTAAAGAAATATAA EST sequence (targeted fragment marked with yellow): GCATTTTTTTTTTTTTTTTTTCAGCATGAAAGAACTCTTTTATTCGACACCAAAAAATTCTCAAACAGATGAAGAAGATATTACTTAACCGAGGATACATATTTACCCAGGGCTACGCAGTTAATTACCCTGACGCAGCCAATTAACGGGCGTAAGATAAAAACGGCAACAATTAAGGATCCACATATTTCTTTACGGAGGGAGTAGTATATACTAGTAGTACGTGGAGAAGCAGTAAGGCAGTGATTTATTCCTCTCTCCGGGTTGTCAAATCCTTCAGTTCAGCTGGAGCGCGGAGTTGACGCCGAGCCACGGCGCGCCACCGTCTTCCGGCACAGGCTTGCCGGCCGTCTCCTTGGCCGCCCCAGCCCCTGGCGCCGCTAACGGCGCAGGGTACGGATCTGCCGCGGCGAGCCTGCTCTTCCTCTTCTCGAGGAACCTATGGAGCGACGCCTTCCTCGCGATCGGCAGGTCTGCTAAGCAAGGCTGCCCCGGCGCGTTCTGGCAGACGGGCTCGGCGTCGGAGGCGGCCGGCGGCGCGCTGAAGGAGCCGGCGAGCTGCATGAGCTCCTTGGCCTTCTCGGCGGGGAAGTCGTCGAACACCACCGTCCTCCCGCCGTNNNAGATGGTCAGCGGCGCTCTCTCAGGCCCCATCCTTTCGTGCGAGTCCCTGATCGTGCCGGCCTGCTGGGGGAAGAGCTCCATGGTCCTGATCCTCTCCTCCGGCGCCACCGCCTCGACGCCGTCGGCGGCGCCCGGCATGAGGCCCATGGTCACCATGCCGCCGCCGCCGCCAGGCTGCTCCTTGATGTACTGACGCNGCAGGCCGAACGCCGCGGCGAACCTGCTGCTCCCGGCGGCCTTGGCGGTCTGCTGCTGC | |||||||||
gi|159783492|gb|EG399628.1|EG399628 BG01038A1B12.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TCCCTCCGTAAAGAAATATAA EST sequence (targeted fragment marked with yellow): CGATTTTTCCTTTTTTTTTTTGAATTGTGATCCCATGCTTTATTAATGGCACATCTTAGATATATATGGAACATACTAGCTCTGTAAACAAATATAACAAGTTTTAGGTCACTACTTTAATGACCTAAAACGTCCTATATTTATTTACAGAGGGAGTACACAACTATCTCAGCGATGGTAACACACCCATGAGAGTTGTGTAACAAATAGTGCAACAATACATTCAAAGATAGTTGTTATTTAGCTGGTTGGATGTAACTCAATTCTCACGCCAGATACTTGAGCACGCCAGGAAAGTGAACCATGTAGAAATAGTCGTCCCAGTCGATTTTCTTGGGATCGAAATCAAAGTAGTATTCTCCTCCATCACTATTTTGCTCCATCGCCTTCCTTAGCTTCTCAAGGTTCATGTCATCAAAGCGCCCTTTGAATAAGGTGTAAGGTGCATAGAGCTCGATCAGATGCATGGCCAGTCTGTATTTTCCGCTGAGCTCATTGTAGCGCCGCGAGAAAACACCACATAGCACTACGTTCACCAGATGAAGGATCTCAAGAGGGAGCTTGTACTTGATGATCATGTAAGTGCGGAGCTTGGCAACCGTGCTGAAGAAGCGCATCTTGTTCAGCCGGATGGGCTTGCCGTTCTCCCCTCGCGGCGGATTGTCCACGAAGTAGCGGTGGGCCGACTCCCGGAGAGTCATGTAGGACGCCGGGTTGCTCATGGACGACGTCACGTGGTNNNTGGTCTGCGTTTGTTCC | |||||||||
gi|159758512|gb|EG400771.1|EG400771 BG01038A2A03.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TCCCTCCGTAAAGAAATATAA EST sequence (targeted fragment marked with yellow): GCATTTTNNNTTTTTTTTTTTGAGATAGAACACTGGCATAACTTGTTTGTATGCTAGGATGGATAGCACATGCACCATGTTTGGCGCTCCCTCTCTCCCTCTCTTTGCATGTCAATGCAACTACTAGCAGCTAGTAAAAGAATTAAGAAAAACCTAAGCTCTAGGCGGCCATTGGTGATGCGAGCTGAGATGAGTGAGATCCCGGACTATTACAAAGTAGGATCCATCCATCCATCTTGTCTCCTCCCTAGTACTCTCTCCGTAAAGTAGTGATCTAAACGTTCTTATATTTCTTTACAGAGGGAGTTTTCATTACTAATTCCCTTGCAACTTGCATGCATAAATATGCATGTCTTTCCTCTTTTCGATCAATCTGATCGGTGCACGTACGCGTCCCTGGATCAGTTGATGATCAGCCACTGCCGGCGCCGGCGCCGCCGCCGTTGATGACGCCGTCGTTGCCGATGTTGAAGGACGGCTCGGGCGGCAGGAAGGGCGGCAGCGCGGTGAGGGAGGTGGAGGAGACCCGCCGGATGGAGCAGCACCGCAGGATCCGGCGCCGCTTGTTGAAGGGGTTCTCCGGCTTGGCCAGCACGTCCTTGCTGCTGGTGGTGCCGGCCCCGGCCACGTCCTGCAGGTTCGCGAACGACCGCGACTTGCCGGNNNNNNNGCTCGACAGCCCCCTCTTGATGGGGAGGGCGTCGTCGNNNGCGTCCAGGCTCGCGAGCCCGCCGCTCTTCTTCGTCCTCCTCTG | |||||||||
gi|159772137|gb|EG378049.1|EG378049 BG01014B2A07.f1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TCCCTCCGTAAAGAAATATAA EST sequence (targeted fragment marked with yellow): ATAATTTCCTCTCTCTCATACAGACATACACTAATCGACAAACCTACCAATAGGTAAAATGCTCCTTGTGTACACGAGTGTTGTTCTGCAGGTTGCATCATTGATCTTAGTAGATACTCCCTCTGTCCTCATATTGGATGTAATAACGTCTTATATTATGGGACAGAGGGAGTATAGTGATCTAAACGATCTTATATTACTTTACAGAGGGAGTAGTTTAGTGATCTAAACGATCTTATATTACTTTACAGAGGGAGTAGCTTTCTAGCCTAACTAAAACACGGTTTTGGTTTTAGCTTGTAAACACATTCATTCAATCTTTCTTTCTCAACCTATCCTGTTTTTGATTTGTGTTGTAGCCTGTTGCTCATGCTGCAGCAGTTGATCACAATCCAGGAGGAGGTCACTGGTTAGTTGCAGGTCTTTCCCCTCAGGTTGGAAGTGCGAACAGATGTCTACCTCCTAATAATCCCTATCCTCCAAAAATGCCTTTTTCTTATGGGAGTAGTTATGGAAGTCTTGGTAGTCATGGTAGCTATGTTGGCAATGCTGGTCTTGCGAGCAGCTATGGAAGCTATGGTGATGTGAATAATGCCAACATGTTTTACTCACCATTAGGTCCTTCTGGATTTTCACATGTTAGCTCTAGTCC | |||||||||
gi|159670220|gb|EG387101.1|EG387101 BG01021B1E10.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TCCCTCCGTAAAGAAATATAA EST sequence (targeted fragment marked with yellow): GCATTTTTTTTTTTTTTTTTTGTCGACCAAGTGACTGATAGAACCAACAGAGGTACAACATAAAAGATCAAACTACTTCAGGTTCCCTCTTTTACAGCATCTGTTGTACGTCTGTGTACACCACTTGCACAACTCCCTATGCAAAAGAGCTTCACTGTGCATACCATATACTCCCTCTGTAAACAAATACGGAGTATAAGACATTTTAGATCACTAAAGTAATGATCTAAAACATCTTATATTTGTTTACAGAGGGAGTATTTGACAGCAGATGCCATGTTTACTCACCATCACTGAACGCCGAGATGGTGTTCAAACAGACATAATATTGACCACACCTTAAGGGTGTGCAGTTATTGTGGATTTTCTAACATGGCTACTCAGCCATGACAAACTTAAGGAACGGATGAACAATATGTAATGCTCAGATCAGATGGCATCCTTGTAGACAAGAGGCTTGTTGACCCATCTGATGCGGCAGCCGCAGGCTTGCAGCAGCTGGAGCAGATCAGGGGACAGCACGGACTTCAAACCACTGAGTATCTTTAGCTTCTTCAGCCTCCCGCAAGCGGCTCTCAGNNCCATCTCGAACCCTTCTATGGAAACCCATGAGAGGTGCACCATCTTCACGTCCTGGAGGCACCTCAGGGAGCTAAGCAGGTGGCACAAGCCTAAGCCAGTAACTTGGCAGTACGATATAGTAAGCTGTC | |||||||||
gi|159627462|gb|EG397070.1|EG397070 BG01032B2F08.f1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TCCCTCCGTAAAGAAATATAA EST sequence (targeted fragment marked with yellow): CGAGAGAACGCACCGCCAGCAGCACGCCGGCTCCGCCAAAGGCCTCGCCGGGATGAGGGAGAGCCACCAGCACCTTTATTCCACACGGACACTGCCACCCCCATCTCGACGGCATGACCGGGAACCACTACCCTACTAACTACAAGCCGGAAGCACAGGAACGGGGTTCCCGCCCTCTCCCATCGCCGGAGCGGCAGACGGAGAGCGAAGGAACCACCGTCCTGGCCGGCGGCAGATCGAGGGGACGAAGTCGCCTTCCTGTTCGCTTCCCTCAACACTGTAGAGAGGGGAAAGGGGGCTGCTGGCGTTCTGGTAATAGGTAATCCCGAATTCATAGTACATGTTTTTCTAGCCCTTTACTATGAGATACCAGGTAGTTATTCGCAAAGAAAAAGAGATACCAAGTAATTGCCCTGCAGAGTTCATGGCAAATGTTGCGTAGAAAAAGGAGTTGAGGCCAAATGTTTGTCATCAATCAGGCTGGGAAGCTACCAAACAGATTGTTCTACTTGTCTATTCCACCGAATATATTCGTGGACGTGGTAAGATCTGCCAGCCGCACCGCTTCATTGCCGAGTGGGAGTGGCTGGACGAGGTTTATAGTGGAGAAGCCATTCGGTCGCGATTACGAGTCCTCGGCGGAGCTTACCCGATCCCTGAAAATGTATTTAGAGGAGGAGCNNATCTTCAGGTATACTCCCTCCGTAAAGAAATATAAGATCGTTTAGATCACTATCTAAACGCTCTTATATTTCTTTACAGAGGGAGTACTATATAT | |||||||||
gi|159767641|gb|EG391545.1|EG391545 BG01016A1B04.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TCCCTCCGTAAAGAAATATAA EST sequence (targeted fragment marked with yellow): CGATTTTTTTTTTTTTTTTTTAGAATCGCAGAATGGACGACCCCAGTTTTTTACTAGTCTTTTTCCTCTCTCACTCCCAAATCACAGCCACTTTGGCATAATGTATGTCATCGAAATTCCCCATCAGCGCCCACAAACCCTACTACTGTACTAATCTAAAATAGTGATCTAAACACTCTTATATTTCTTTACGGAGGGATACCTTTTTCTCTTCCAAATCTTTTCCCAAACCAACCCTCTTTTTTTTCTCGATGGCTTTTCGATATGCTCGCCCACTACCGGTTTGTTCGCCCTCGGCCTGTACCGAGGCTCCATGTGTGCAGCTCACACCATCATCACAGGTTACAGCTGGCCAATCCGGATCTAACGCCTACGGTCCTCGTGAATCACAGCTTCCCCTGGCCGTCCGATCCTTTCCCCACGGCGAGGATGGAGCCCCGCGCGCTCTGCTCCAGGGTGCGCACCACGTCGCCCATGGACGGCCGGAGGCTGGGGTTCTGGCCCACGCACGACGCGGCCAGCGCGGCCACGGCGGNGGCCTCGACCGCGTCGTAGGCGCTCCCGAGCCTCTCGTCGACCAGCACCCGCGCGTCGCAGGCGGCGCCGGCCTTGNNCCGCGGGGCGAGGACGGCGGTCAGCAGCCGTCCCTCCACGGGGC | |||||||||
gi|159774706|gb|EG401114.1|EG401114 BG01040B1E07.f1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG TCCCTCCGTAAAGAAATATAA EST sequence (targeted fragment marked with yellow): TTTTNNTTTTTTTTTTTTTTTTTTTTTAATAATAAAATCAGAGTGACTATCATTTCATCTGTCAATAGATGACGTACATGAATGATTTTGAAACAACAAAAGGACAACGGCCTAACCACAACGAAAAACGGTCAAACGGACGGTCAGCTATCCCTGTTACTAGTGATCTAAACGATCTTATATTTCTTTACGGAGGGAGTACATCCCAAGGTTTTAAAACATCAGTAGGATCATACACCACCCTCGCCCGCCGTCCTTCCTCCATGTCCTTCCTTGTGTGAATCAATCAGCCCAATGAGCTGCTGAACTTGCAGGATCCGTGGCTTGGGTCCTTGATGGTCTGCTCTGCGAGATTATTGAAGTAGCACGTAGCTCCGGTCTTCCTGAACTGCTGCCAGTAGGAGTTGAAGGCGTAGCTGGCGTGCGCCGCGCCCGTGTTGGGCTGGAAGCACTGGCCGCCGGGCTGGATGGCGTCGCACGTCCCGTTCCCCTGGCCGCACGCGTACGTCAGCGCGTCCCCCGCCGCCGTCTCGTTCAGCTTCCTGCCGGCGTGGGCGGCCAGCACGCACCATATCGGGCCCTTGTACGGCGTGTTGTTCTCCGCCGCCGGGAGCGGCGGGTACGCCCACAGCGGCCTCCGCCCGGTGAGGTCGACCTGGTACACGGCCGTGCCGTTGGCGTNNNAAAGGCCCCAGTGGCGCTCGGTGCCCGGGCCGGGCTTG | |||||||||