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mature miRNA: TCCCTCCGTAAAGAAATATAA
species: Triticum monococcum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|25444289|gb|CA722496.1|CA722496 wds1c.pk002.p13.f wds1c Triticum monococcum cDNA clone wds1c.pk002.p13.f 3' end, mRNA sequenc

TCCCTCCGTAAAGAAATATAA
|||||| ||||| |||||||
AGGGAGACATTTGATTATATT

EST sequence (targeted fragment marked with yellow):
TACACTCACTATAGGGCGAATTGGGTACCGGGCCCCCCCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACAGTATAACTTATTTTTTGGTAAGTAAATCAATGGTCAAATGTTGACCCAAAATACAATAGGGCTAATAAACCCAGATCGAGGTACTTATAAATTGAACTTGAACACTCTTCAATCTTCATCCAACTTTGTAGAGTACTCGCTCCATAAACTAATATAAAAGTGTTTAGATTACTATTTTAGTAATCTAAATGCTCTTATATTAGTTTACAGAGGGAGTATATGCCGTCCGTCCTCACTTACTTGGCCACCGCGGCCTCCTTGCAGTCCTCTTTCCCGAAGGCGGAGACGGGGAAGGTCCTGCCGAGCCCGGTGGGCGTCTTGAAGGTGATCTTGGAGGGGTCATCCTTGTCGATGTACATGTCGCAAAGGGTGATCCAGATGAGGAGCTCCTTGCTCTTGACCCCGGGTCATGCGCTTCATCTTGCGGTCCTCGACAAAGGCCGTCACCTCCGGTGCCGTACGAAAACCTGCCGCCCGATCTGCTTGAAGGGTGTGCGTTGAGCCGCCTTCTTCCGG