| mature miRNA: TCCCTCCGTTCGGAATTACTT species: Triticum aestivum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|222369710|gb|GH729024.1|GH729024 G750.117P23R010803 G750 Triticum aestivum cDNA clone G750117P23, mRNA sequence TCCCTCCGTTCGGAATTACTT EST sequence (targeted fragment marked with yellow): GGAAGGGAAAAAAAGGGGGCTCAAATTACACCCACAAAATGAATGAACAAAACCACTTCTGAGGGGTCATGTTTGGAACTAAAACCACGACGAGTAAATCGGAACGGAGGGAGTATGTGCAATGAACTCAACTCAGGTGAAGGGAACAAAAGGGGGCTCAAATTACACCCACTAAAGGAATGAACAACACCACTTCTGAGGGGTCAAGTTGAAACAGAAAAAAGGAACCAAACACGGACCCCCTTTCCCTTCCCTTAAATCCATCCCCCAAAAAAAAAACTAAAGAAAGGAAAAAATCACCCAATCGTGTCACCAAAAAAAAACCACCCACCAACAAAAAAACAATTTAAAAACACAAAAAAAAATAAGGGATTCTCCTACCTCAAAGGAAAAAATTTTCCCTAACTAAAAAAAAACCATGAAGCAAACGCGAGGACCACACAATAAACAACCAGAATACACCATTAAAGACCACACAACACAACCCCACACCACAAAACACTATCACAACACACAAAAAAAAAACGAGAAGACGTGCCACTACAGCCAAACAATACAAAACAAACTAATTACCCAACAACCAACAAAACCAAAAAAACAAAACCCAAAAACAAAAAAAAATGAATCAAACCAAAAAACAATAAAAACAAAGAACAACAAAAAAACCCAACTCCCACACTAGGCCAGACCACAACAAACCCACAACACCAACACCACCCCCACACAAAAACAAACCAACAAAACAGACCAAACAACACCAAAACACAAACTAAACCCAAAAAACAAACAAAAGATCAACAAAACTATCAATATCAACAAG | |||||||||
gi|222364247|gb|GH724087.1|GH724087 G468.104E04F010809 G468 Triticum aestivum cDNA clone G468104E04, mRNA sequence TCCCTCCGTTCGGAATTACTT EST sequence (targeted fragment marked with yellow): CCACGCGTCGATTAGATCTATTTATCACGACGGCTCCAATTCCTGACTGAATGACAAGATCGTTTTGTTTGGCAGAGTTATTAAGGGAGAAGATATTGTTCAGGTATTTTATCTGGACTAGAGATGATACCCCGCGTGTTGCTGCAGGAATTGGATGCAGCTATTTCTATGAGAATTGGCAATATGAATAGTATTTGGATTAGCAATGTGAGATTGATACTAAAGTATATACTCCCTCCGATCCGAGTTAATTGACGCAGCCTCTATACAATGTCCCGTTTACATTGTATAGAGGCTGCCTAAATTAATTCAGATCGGAGGGAGTATAATTTATTATATTTGATTATTATATAGTTGTAAAATATTTATTGAATATGAGTAGCATACATGGTGCAT | |||||||||
gi|143794430|gb|CJ960358.1|CJ960358 CJ960358 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul22n2 TCCCTCCGTTCGGAATTACTT EST sequence (targeted fragment marked with yellow): GTGTCAATCCAGTGGCGCTCATGAATGCTTCCTGAGCTCATGGTTCAGTGTGACCTGTCTGTCATTAATTGCTTTAGATCACTGTATGTTCTTTTTCGCAACGGAGGAAATTCTTCACTTTTACCCAGTATGATAATTGACATTGGCTAGTAGGTTCATACTGTTCTCTTAATCAAAATTGCAAAAGAGCAACCGGAAAAATGAAGAAATTGTTCAATCTATCCAGTATGAATCCATTATTGCACTCATGGCTGAAGATCAGACATCTTATGTACACATCTACACAATAGTGTTTCTAACTTTATTATTTACATTTGGTAGGATGATGCCGTTCCTAATCCTCTCAGGACAGCTTTGCCCGCCTGGAATCGAGGGCACACTGTTTGCTCTGTTCATGTCCATTAACAACCTCAGTTCGACATTAGGTTCATTCCTTGGAGCTGCATTGACGTCAGCTTTGAACATCTCGTCGGTACAGTTTGACAATCTGGCGCTTGGCCTAGCTGTTCAGCTGATGGGAACTCTCTTACCTATTGGATTTTTGTTTCTGATTCCAAGGGACGTTACAGGACTAACATCGGGTTACAGACCTGATCATCATTTTTTCTGGACTGGTCTGGTCTGTATTCCCTAGTCTTACTCATACATGCATATAGAGAAAGCAAATTGAAGCCAGCAGGAAGGTAGCTCAGTTTTGTTGAAATATGTATACAGCCATATACTCCCTTTGTTCTGAATTACTTGTCGCAGGTATGGATGTATCTAGATGTATTTTAGTTCTAGATACATCCATTTCTGTGACGAGTAATTTGGAACGGAGGGAGTACTAGAATGAGAGGAAGAGTACAATAGCTGACATTATAAAGCGTTAAGCAATGGCGAAACTGTGTAGCAAATGTACTTGCGCGAAACATGTGTTANCATGGAAAGTGT | |||||||||
gi|143800305|gb|CJ966226.1|CJ966226 CJ966226 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul40h1 TCCCTCCGTTCGGAATTACTT EST sequence (targeted fragment marked with yellow): TATACTCCCTCTGTTCCAAATTACTCGTCGTGGTTTTAGTCCAANTTGNACTNAAACCATGACGAGTAATTTGGAACGGAGGGAGTATATGGCAATGTCAGTTCTAAGATTAGTTCTTAACTGCTTATGGCTTGTTACCGAGTACTTCTACTTAATATTTCTTATTATTTGTTGTCAAATATACCTAAGGGCACCATCATGTTTATTTTTGTTAATAATCACTGACTTGACATTAGAGCTTTGTCGTCTCAGTTTTGATTTTTCCAAATGGATTTGCTTATCAAATGGTTGTCTCTCGGGTAATGCGTGCACTTAATTCAAGGAAAAGATATGAATGGGTATGCAGGAAGGGGAGTGCGTTCCGCTGCTGTATGAGAAAAAGTGCACGCAACTGAGGACCTAGGATGCCAACGGTGCAGAGCCGTTCACCATCGAGAGGACCAGGGCTACCATCAGGAATCTCCGGACCAAGCTCAACATCACCGTCGCCTTTGTCAAAGACGTGTCCCGGAGGGTAGTTGTCATCTGCGACTCCTCCTCCAAATGCTGGCAAGGATGTGGCGAGTCATTGGCGACGTGCACCGGGTGATGAAGCGCATAGTGGATGAGGTGAGCGAGCTTCTCCCATAGTCACCACACGGTCGGAGGCATCAGAGGCACACCACCGCCGTTGGGGCCTACACATGCGCAATTTCTATTGTTGTATCTTATTAGTTGCCATGCAGCAAGATGCTTCTGTCGATGGTATTATAATTGTTGTGTGTTGTCTGTGATGGAATAT | |||||||||
gi|143793361|gb|CJ959091.1|CJ959091 CJ959091 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul19k2 TCCCTCCGTTCGGAATTACTT EST sequence (targeted fragment marked with yellow): CCTTCATCTCAGTTCATTCACAATCAGCCTTCACCTTCATCTCAGTCCTCACCTACTTCAGAGTTTCATACCGCCAACACACAGAGATCATGGCGGGTGCAGCTAAGGCGTCTTGGATGGTGGCGATGAGCGTCGGCGCCGTGGAGGCGCTCAAGGACCAGGTTGGGCTCTGCCGATGGAACTACGCCCTCAGGTCCATCCACCGGGCAGCCAAGGCCAGCGCCAACGTCCGCGGCGGCGTATCGCAGGGCGCTAAGCAGCTTCCAGCCTCTGCTGTGGCGGTGGCGGAGAGGCGGCGTGAGGAGAAGGCCGAGGAGGGGCTGAGGACGGTGATGTACCTCAGCTGCTGGGGTCTCAATTAGAAGCTGCCTACTTGGTATTTCCTCCGTTTGAAATTACCTGTCTCGGAAATGGATGTATTTAGAACTAAAATACATCTAGATATATCTATTTTCGCGACAATTAATTCCGAAGGGAGGGAGTACTAGCTAGGCGTGTCTGTGGTTAGTACTATGGCCTGAAACCACGATGTAGAAACTTGGTACTAGCCGGCTTCGAGTGGAATCCCCCATTGTAAAAACC | |||||||||
gi|222362382|gb|GH723176.1|GH723176 AZO3.107I07R011127 AZO3 Triticum aestivum cDNA clone AZO3107I07, mRNA sequence TCCCTCCGTTCGGAATTACTT EST sequence (targeted fragment marked with yellow): CCAGATACTGCAACTCACCAGAGCAGCAAGATCATCTGTAGGAAATGAACAGATAGGGCCACATTGTATTTCAGCATGAACTGAAACTGTTCTGAGTAAAGCAACGCCGGTGAAACATCCACCTGAAGGCAGCCGTTTTACTACTACTGAATCCAAAAGAAAATCTTTGTAACAAAGCCCCCCTTATAGATTAGGAATTATCATGTACTCCCTCCGTTCCGATTTTCTCGTCGTGGTTTTGAACTAAAACCACGACGAGTAAATCGGAACGGAGGGAGTACATCATTGCTATTTTACATCACCAGCTTCAGTTGTACAGACTAATTGGCTATTGGGCAGCAGAAATGCAGAACCAAACATCCTTCCCTCAGGCTCAATTGGTGAAATGTACATATTATCAATGGAGCCTCTAAAGAAGTTTTGAGCCTGAATTGTTCTGCGACTTGCCAGTGTTGGTGTAGCCCAACAATAGTCTAGAAAGAGGGTAGGGGCAGCCGAAAAATCGAACAAGATTTCGCAATCCTCTCTCTCCATGAATATCAGTTGGTGATCTTATATGGCTAAGATATGTATTTCCTTCATATATTAAGCTAAGTTGCTGGCACAGCAACACAGCTATACCCGCATTAAACTGATAGACTGGCAAATGCAAGATATACCAGAATTATCCCCCTTGCTGTTAAGAAGAATGCATAATTGG | |||||||||
gi|222369869|gb|GH729261.1|GH729261 G750.100D07R011130 G750 Triticum aestivum cDNA clone G750100D07, mRNA sequence TCCCTCCGTTCGGAATTACTT EST sequence (targeted fragment marked with yellow): AGTTAAATCCTGGATAACTGTAACTTCTTCAGAGAAGAACTCGAAGGCAGGGAAGCAGCAGCAGCTCGAGCTCCACCGGCTGCAGGGAGAAGCAGAAGCACGAGCTCGACCGGCTGCAGAAGCAGAAGCAGAAGCATGAGCGCCGCTGTTTTTTGTTTACCGGAGGAGCTACCGTGACGAGCTTCAACGGCGGCAAGCAGCGACCGGATTGGGAGGGGACGGTGGCGATTCAGTTGATTCGTGGCTTTCCGACAAGCGTGGTTCGAGGCGGGCGTAGCTCTCGGCGCGGGGGAGCTCGGACTGGCTCGGGGAGGACTGAGGTCGGCCGTCGGCGTCGAGCTCGTGGGGGCAGCGGCGGTCGTGGTGGGAGGAGATGGCCTCGATTCCGTTGATCCACGGCCGGAGGCAGCGGAGGAGCTTCAGGAGATTTTTGGCAGGGGGATAAGGATCGGGATCAGGCCGGCGGCTGGAGCTCCACTAGCCTGTAGCCTCGCCGGCGGCCGATTCTTCAAGCGCGAGCCGCGCACGCCTGTCGTTGTCTATTTTTGTACAATTTGAAGATGCCCAGGGGGTTTCTTATAAATGTTCGTAGTTCAAATTTTAGAACCCCCACGACATCTAAATCCGAACGGAGGGAGTAGATCGTTGGCTCCGCCT | |||||||||
gi|222363614|gb|GH723748.1|GH723748 AZO4.104K17R011122 AZO4 Triticum aestivum cDNA clone AZO4104K17, mRNA sequence TCCCTCCGTTCGGAATTACTT EST sequence (targeted fragment marked with yellow): ATGTAAGGCATCAATAATTGTTTCGAGAGTGCTGAGCAATCTCACCAGGTCAACTTTGTTTGCAAGAAGAAGAAGAAGAAGAAAAAACCCATGAATAAAATCAGTGAAGACCACCCAAGAAACACATATACTCCCTCCGTTAGGAATTAGTTGTCTCGGAAATGGATATATCTAGAACTAAAATACGTCCAGATACATCCATTTCTGCGACAAGTAATTCCGAACGGAGGGAGTACTTACACTACATCAGAGGAGGGGGGAAACTGACACATTGGCGAGACCAAGGATTATACACACACCCACACCAACCAACCAACCAACCAATGTGTCCAAAAAAAATCGAACAATCATCATCATCATATCATAGTCCAGGTTATATTATCCTTTGCTGCAAGAGAAAGCTTCCATCGCCTTTCCTCTTCCTTTCCTCCTCGTATATTCTACGTACCATCTAGTTACATGATGAAGTAAGCTCGGATCACCTCAATAATGGGTGCGCGGCACAGCGGACACTTCCCTCCGCTTCGAACCAACTCGTTCGCGCATTTCGAGCACGTGCACATGTGCCCACATCTGTACAGAAGAGAGTCGATCGGAGTATCACAGCATACACAGAAAGTGCCTTTCCTCAAATTCATCCATTTCGATCCATCGTCGATGGTCTCCTTGGGTTCCCCTGGCTCCCCAATGAAGCGATTCAAGGCCGCGGAAAACTTCCTGCCTCAAAGAAAGTGGTAATTCAAGGCTGTATATCATG | |||||||||
gi|222369376|gb|GH731706.1|GH731706 GR45.120E09R010830 GR45 Triticum aestivum cDNA clone GR45120E09, mRNA sequence TCCCTCCGTTCGGAATTACTT EST sequence (targeted fragment marked with yellow): AAGAGGAAAATTAGTAAAGGGTATAATAAAAATGAGGTGTGGGCATAAGCATTAACAAGGGAGTAACATCTACCAAAAATTTACATTTTACTCCCTCCGTTCCAAATTACTCGTCAGGGGGACGAGAAATTGGGAACGGAGGGAGTAATTCTGGAGGAACAACCAAATTTCCACAAAACGAAAAAGGAAAAAAAGGGAAAAAAAAAAAAGGGGGTAAAGCTAAAAACTGGTCTGGTCTCTACTAACAGCCAGAATCTCTGGTCATGGGCCAACTTAAATGGTAGCCACGTGAGCGGAAAACCGGGACGGACAAGAGAGCCCTCACGCAAAAAGTCAAGTCAAGGAGTCGCAAAATCGCGAACCAAGGGGGCAACCGATTGGGAAACAAGGGGAAAATGGAACGGGGGGTAAACCCAAGCCCGGTTCCCCGGCCACCATGGGCCCGGCGGGGTCTCAAAGAACCTCTAACGGGGGAACCAAAGTCGCTTGAAATCTTGGGCCCCTCCAAGAAAGGAAGGGAGAGGGATAAAAAAACCGGGGTCGGATGGATATAACCATGGGCCTCGGGGGGCATCCGCAAACGGGGGGGACAACAACCAAAANAGGGATGGCGGGAAGGGCCAGACAGTAACAAAAAAAAAAAAAAAAAAGAAAAAACAAAAAAGGCACAGGACACAGGAAAAACGGGGAAGCAAAATAAAGAAAGAAGGAGAAAGAAACAGGACCAGGGGAAAACCGGAAATCGAAGGCAACGAAGAGAACCAAAACAAAAAAGACAAAAATAGGGAAA | |||||||||
gi|143802162|gb|CJ968083.1|CJ968083 CJ968083 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul9k20 TCCCTCCGTTCGGAATTACTT EST sequence (targeted fragment marked with yellow): TNTGCATGCAGGATGGCACGCCAACATGGAGAGGCAAGGACGCACCCCGGCGACCATGCCGCCCCTCATGCANCCAGGGATGACCCGNTGATTCNTCGATCCGTCCGTGCNTNTTCCTCTCANAACACNCNTCTAAANTGAGCGTCNTTGNGTAGTACTCCCTCCGTTNNGAATTACTTGTCTCGGAAATGGATGTATCTAAAACTGAAATACATCTAGATACATTCATTTCCGCGACAAGTAATTCCGAACGGAGAGAATACAAATAATCTCCATGCTGTTCGGCGTCTTTGCGGTGTCACAGCTTGCCTAGCTACTTGCAGGTTTCTGTACAATTAATACCAGTGTAACACAGAACTACCACTTTCCTGTAA | |||||||||
gi|222363274|gb|GH724796.1|GH724796 F1.113E01F010531 F1 Triticum aestivum cDNA clone F1113E01, mRNA sequence TCCCTCCGTTCGGAATTACTT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGGCTGATGCTGAAATTTACGATTATGCAAAACAGATGGTTTCTTCATGTCGTGGGTTACCTAGAGCCATATGTGCCATTGGCAAAGGTGTTGCTCGAGTGACTTGTGGTGGTAAGAATCTATTTGCTTGGCAGTTCGCCTACAAGCAAAGCATGGGCAGAAATCTACATCCCGAGCAAATGGAAGAACTAGCGTTTGTTCTGATTTAGGCAACTTGTGCGTGGCTCCTAGGAGCTGTGGAGACTTGGTTGGACTTCATTTCTTGTTGCTGCCGCAATGAAGTGTTGGAAGAGTCCAGATGGCGGCAGTTTGATGCTTACCTGTGAATATGGTGTGATATGTTTGATGATATTACTTTCTAGTACTCTCTTCGTTCGGAATTACTTGTCGCAGAAATGGATGTATCTAGACGTATTTTAATTCTAGATACATCCATTTCCGAGACAAGTAATTCCGAACGGGGGGAGTATGCGATAACTTGACTTGTCAGTCTTCTGATGCCCCTAAACATAGGGCAAAACACCTTCATGCTCCAATGGAATGCAAGAGGAAAACCGGAC | |||||||||
gi|222362463|gb|GH723205.1|GH723205 AZO3.109C15F011010 AZO3 Triticum aestivum cDNA clone AZO3109C15, mRNA sequence TCCCTCCGTTCGGAATTACTT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGAGGAAATACATATCTTAGCCATATAAGATCACCAACTGATATTCATGGAGAGAGAGGATTGCGAAATCTTGTTCGATTTTTCGGCTGCCCCTACCCTCTTTCTAGACTATTGTTGGGCTACACCAACACTGGCAAGTCGCAGAACAATTCAGGCTCAAAACTTCTTTAGAGGCTCCATTGATAATATGTACATTTCACCAATTGAGCCTGAGGGAAGGATGTTTGGTTCTGCATTTCTGCTGCCCAATAGCCAATTAGTCTGTACAACTGAAGCTGGTGATGTAAAATAGCAATGATGTACTCCCTCCGTTCCGATTTACTCGTCGTGGTTTTAGTTCAAAACCACGACGAGAAAATCGGAACGGAGGGAGTACATGATAATTCCTAATCTATAAGGGGGGCTTTGTTACAAAGATTTTCTTTTGGGTTCAGTAGTAGTAAAACGGCTGCCTTCAGGTGGATGTTTCACCGGGGTTGCTTGACTCAGAACAGTTTCAGTTCATGCTGAAATACAAGTGTGGCCCTATCTGTTCATTTCCTAAAAAG | |||||||||
gi|143798982|gb|CJ964903.1|CJ964903 CJ964903 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul37b1 TCCCTCCGTTCGGAATTACTT EST sequence (targeted fragment marked with yellow): ATCCATTTCCGAGACAAATAATTCCGAACGGAGGGAGTAGTTAGCATTGTGCTTGTTATGTATCGCGTTCGTGCTCTTGTCTCTGGAGAATCTGGCTGGCATAGAATGAAATTCAAGTTCACCCGATCCAAACCGCAGTTGTAAGTCGGTCTTTCGTTCGTGTGCCAAATAGGTATGTTGGTATTTTCTTTTCCTTGCAGAAGATCAGATCATAGTTGAGAACTGACCATGAGAATCTTGTGTATTGTTGTTTGTTTGCCACTCGAGTTATTGGGTGTTCACCTTTGCATCCGAAAGCTTACATTTTGATCCATCAGGATCACAAAGTTCCAGTTTCGGAGGCGCAGTCGCCGTCACAGGTGCTGTTGGATAATCGGTGTAAAGAAACTTCCATGGCCCCTTCACATGCTGCAACCCTCCAGTTTCAAAGGGTAGCCTGTGTATTGCATCACACATGACTTTGCTTGAAGGCCCTCTCTCATCTATATAAGCAAAGCTTCAGCCTAAGCAATCTGAATAGTAGGAGGTGAGCTCGGAAGCAGCAATAAGTCTCAAGCCCAGTGCCACTGTACAATTGATCCAGGCTTCAGAGCTGATAGAAAATTAGAAGAGCGAATATAGGACGTTGGTTCCAGCAAAACTTGTCTCATTCAACTTCTTTTGATCCCAAAGAAACCCGTTT | |||||||||