| mature miRNA: TCCCTCTGCAAAGAAATATAA species: Triticum aestivum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|290775524|gb|GW667708.1|GW667708 M1126878 SSH cDNA library of T. aestivum cv. Chuanmai 28 Three pistils mutation Triticum aes TCCCTCTGCAAAGAAATATAA EST sequence (targeted fragment marked with yellow): CTATTTTCTTTGTCCGGGCGGCGGGGGGGGCCCGTTAAAAAAACACCCCGCCCCCGCCCCCGGTTTGAGTGCTTTCCCCCCGTTTTTTCCCTTTTTTTCCACCTTTTCTTTTTTTTGTGGGGGCCCCCGAGTGTGGGGCAAGTAAAATAGGGTGGTGGTTTGTGAGGGGGGGATAACCGCCCCCCCCCCCAAAACGATCCCCCCTTTTTTTTTGTGTTGGGGGGGGAGGGGTTTTCTCTCTCACCCTCTCTCCCCGCTGGGGTTGCCCCTAAAGCGGGCCCCCCCCGCTCTCTGCGGCGGAAAGCGCCCCTCCCCCCCTCCCCCCCCGGGGTTTTTTTTTTTTTTTTTTTTCTCCCAGGCCCCCCCCCTTTTTTTTGGTTGTTTTTTTGGTGGGGGGGGGGGGGGGGAATTTTTTCCCCCCCGGGGGCGGGGGGCGCCGCCCCCCCCCCAGTTTTTTTTCCCCCTTTATAATTTCCCTTTTTCCCCCCCCCCCCGGGGGGGGGTTTTTTTTTTTTTGAGCCGGGGGGGGCCCCCCCTTTTTTTTTGGGGGCCGCCCCGCCCCGGCAAAAAAAAAGGCCCCCCCCCCCCTTTTTTTTCGGGGATTCCCCCCCCGGGGGGGGGGGAAGGGGGGGGGTTTTTTTGGGGGGGGGGCTTTTTTTTTTTGCCCCCCCGGGGGGGGGTTTTTGGGTTTTTTTGGGCCCCCCCCCCCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGGAACCCCCCAAAAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|143796860|gb|CJ962783.1|CJ962783 CJ962783 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul2p14 TCCCTCTGCAAAGAAATATAA EST sequence (targeted fragment marked with yellow): CGAAGTTGTTGGATTGGAGCTTCAGAAACAACTTGAAGCTGCTGGTAACATTTTTGAATTTTGCACTTCTTATCATGGTATAGCTGACTAACAGCTAATGTATATATATTGTTCCTTCCACAGAACTGGAATTGGAACGGGTTGAAGTGTTGTTTAATGAAGCTACAGATAACTGTATAAATTTGAAGAAGCCAGATTAGTAATATTATGCATGTAAGTTTGAATGGCATCCTTCCCCGGTATATTAGTAAACTATCAACCATCAATTGGTTATTGTGTTTTCAGCACGGGATGTTTTTGCATAGCCTAAAATAGTGAAGTAGGCCTTGAGTTAACTCCCATTCAAATTTGTGCCATTTCAGGTAGCCGCACCTGTGTTGGTGGAGACATGAATTTCCAGCATTCTGGTGTTTACTTTCTTGTACAAGTCTCTAAAATGTCTTGTGCAAGCCTCTAAAATGTCTTATATTTGTTTACAGAGGGAGTAGTTCCTAATGTCTTACAGCTTCCAAGCTAGATTTGTCGACAGTAATGTTGTCTTGTTTTAACTTGCGTGCATTGATATTCCATGAGCACTTGCTGGATGAGTTATTAAAGTTCAGTGTTGTAACACCTATACCCTGAAATAGTTAAAGAATCCT | |||||||||
gi|282836258|gb|FL488870.1|FL488870 CWFTALYZ1-14-B2-T7_D16_B08 Wheat seedling full-length cDNA library Triticum aestivum cDNA cl TCCCTCTGCAAAGAAATATAA EST sequence (targeted fragment marked with yellow): GTTTTTTTTTTTTTTTTAAGTGTCTTAATTTTAGTATAATTTTGAATTGAATCTAGAATAAAGTTGAGGACATTTATTTTGAGACGGAGAGAGTAATAGTGAGGGCAAAGTTGCTTTCCGTGTCCGAAGCAGCCGCGTAACTGGATATACTACTAACTGGCTACAATGACTGCGAAAAATACAACTGGACATCGGTCTATACCAGAAATCTACTCCCTCGGTAAAGAAATGTAAGAGCGTTTAGATCACTAAAATAGTGTTCTAAACACTCTTATATTTGTTTCCAGAGGGAATACTAGTCTAGGATCCAGCAGCAGCACGGTGCAAACTGAAGACTTGGTAGAGCTGTACATCATCATTCACATACAAGCCTATCGTTGCCTCTCACTGCTGCTGGGACTCTGGAATCCGGCGTACCCATCTGAATTTTCCAGTAGTACCAAAAACATTCAGAAGCGCGGCAGCAGCAGCAGCACCACCAGGTGGGTGCATTCTTCAGAGGAACGCCGCAGCTCGGCGACCACCGGCAAGCAGCTGTACAACGGAGCGGCAGATATATGTCCATGTTCAGCTGAGCACGTCCACCGGCCAGAATCTCCGCCACGTTGAGATCTCGTCTTTGGTCTGGAGCTTCCTGATGCCGCCGTAGAAGCCGTCCGTCTCGTCCCCTTTCTCCCGGTGGTCTTTCCTGCTCACCGTCGTCTGCCTCCACCTCGACCCGGCCGCGTAGTGCTTGAACTCCAGCATGATCGTATCATCTTCATGGCAGCGGC | |||||||||
gi|222369227|gb|GH730439.1|GH730439 G750.116A04R010803 G750 Triticum aestivum cDNA clone G750116A04, mRNA sequence TCCCTCTGCAAAGAAATATAA EST sequence (targeted fragment marked with yellow): AGAAAATCAAGTGTTCATATTGCATGACCAAAACATTCTACCTTACAGTTTCCAGTACAAAATTCACAGAACTCAAGCATGTCATACCATAGTGAGCTACTGAACTTACACTGCAGTAGCCTGTCCAGGAGTGGAAACTCCCCCATGATATTAGCTTTATCGCCGATAAGGCACCTCAGCTGAGCTCACACTGCACTAGCCTCTCCTCTCCGGCACTGGACTTGCTCCTTTGTACTCCCTCCGTAAGTAGTGATCTAAACACTCTTATATTAGTTTACAGAGGGAGTAATAATTTACAGCTGATAATTTGCTTCTTTTTTTAGCTAGCTACCGGTCGGCCAATGTTTCAAACAACTTCCAAAAGGAGCGAAAGCCACCAGGATCTACTGGTTGCTTGCAGAGAAAACTTACTAAGAAACTCAATCCGGTTCCCCAAGCCCATCACTGCCATCCCCTCTTTGGTTGATCGCAGACATACCACCGCGTTTCTTGCCGCCGGAT | |||||||||
gi|189908922|gb|FG618712.1|FG618712 S11_CY23_Contig43 Transcript derived fragments (TDFs) from wheat leaves inoculated by stripe TCCCTCTGCAAAGAAATATAA EST sequence (targeted fragment marked with yellow): TGATGAGTCCTGAGTAATCAAGCAAGCAATATACGTACGACAAGCTATGCTCTACTACTACCTCCGTAAGCAAATATAAGATGATTTAGATCACTACTTTAGTGATATAAAACATCTTATATTATTTTACAGAGGGTTAGTCAATGACATATATCCCGGAGGTGTTGCAGTGGGAAAAAAAGATGTTGCAGTGGATGGGTCTTCTAGGTGGGGCACTGGAAGCCGGAGGGGACGTTCTTGCCGCAGTAGTTGACGAGCAGGCTGAGGTCGGTACGCAGTCTAC | |||||||||
gi|222360598|gb|GH721625.1|GH721625 AZO2.104N21F010112 AZO2 Triticum aestivum cDNA clone AZO2104N21, mRNA sequence TCCCTCTGCAAAGAAATATAA EST sequence (targeted fragment marked with yellow): AGGGATTCAAGGTCTTCCTTCTCTCCGGGAGGGACGAGGAGACTCTGGGCTCCTGCACGTCCCAGAATCTAGAGTCGGAGGGGTTCTCAGGGTACGAGAGGCTCATGATGAGAACTCCCGAGTACCGAGGGCAGAGCTCGTCGCTGTTCAAGTCGGCGATGAGGAAGCAGCTGGTGGACGAGGGATACAGGATCCGCGGCAACCTCGGGGATCAGTGGAGCGACTTGCAGGGCGAAAACGTCGGCGACCGCGTGTTCAAGATACCAAACCCCATGTACTTCGTCCCGTGAAAACACATGGGTCGCCGGCGGCCGGCTGCCGGTGTGCTCGCTGGCCTGCCTGCCTGATCGACTAATTCGTAGGCCGTGTAAACAACGGCCGATATGCGGCAAAACAAGCATAGTACTCCCTCCGTAAACTAATATAAGAATGTTTAGAATACTAAAATAGTGATCTAAACGCTCTTATATTAGTTTACAGAGGGAGTAGAACGTAAATCAAACACTCGAATTGAAGACACATTTTCCTGCCNCTNNAGNNNANNNNNNGNNAANNNTTTNTT | |||||||||
gi|222372132|gb|GH732748.1|GH732748 OV.111O07F010309 OV Triticum aestivum cDNA clone OV111O07, mRNA sequence TCCCTCTGCAAAGAAATATAA EST sequence (targeted fragment marked with yellow): CATTGCTGATTTCTAGTGTATATGATCGTGTGCGCTATGTAGTACTCCCTCCGTAAACTAATATAAGAGTGTTTAGAATACTAAAATAGTAATCTAAACGCTCTTATATTAATTTACAGAGGGAGTATGTATGTGTGCAGATTTGTAGTTGTTTCCCTGTGTATAATTGGATCCACCGCATGCATCCATTCCCCACCATTGTTGTATATCCACCCATTCATTGGACAGCACCAGGTGTAGGTTATTTCTCTGGAATTATTCAGAGAAAGTACCCCCTTCTATTGTACTGTATGTGGAAGTACAGTGCTGAACTTCTGATAATATCTATGAGAGGAATGTGAATTATTCTGCTAANAAAT | |||||||||
gi|239860380|gb|GR302673.1|GR302673 WRIC_289 cDNA library of a compatible interaction between stripe rust (Puccinia striiformis) TCCCTCTGCAAAGAAATATAA EST sequence (targeted fragment marked with yellow): CGGCCATTACGGCCGGGTGAAGGATGAAGATTGGTCGGCAGATACGTCCGCTGCAGCGGTCCAAGCACGAATGAAATCACTCGAAGCTGGGATTCAAAACGGTCTAGCTCTGGACGATGATGACGATGAAAATCCCGGTGGTCCTTATGGTATCTTTAGTGATTGGATCCTCGCTCATCGTGACCAGGCCTCCGATCCTGAAATCCTACTCAAAGCTAAGGAATTGGGTATCGAAAAAAACATAAAACCGTCCAGATTCTCGCTCAGAATCTGTTTACCGCAAACGCAGTTAAAGAAGTCTCTAAACATCACGCACTTTTCGCCAAGATGGTTAATAATAGCGAAAAACATCAAAAAGCTCTTTTAGGTGGAATTGAACAATTATGTGGTGAAGCATATCCTAGTTTAGTTCCACTAGGAGTACCCAAAATCATTATGGAATTCTATCAAGCCGATATATTAGAAGAAGAAATCATCAAGCAATGGGGTACTCATGTTTCTAAAAAATATGTGGATAAAGATGTCAGTAAAAAAGTTAGAAGAGCTTGTGAACCTTTATTAAAGTGGCTAGATGAAGCAGAAGATGAAGATGATGAAGAATGATAAATGAGTTTGATTAGCATTTGTGTAAAAACGTTTATTTGTGTATATATACATTCATATATACACTCTACACGTCTTACACTTCACCTTCTTATATCTCTCTTTTGTTTTGATCGAGTAACTTTGCATCATCATTTTTTTTTCTTTGAAGAGGGAGGGGCGGGAGAAGGCCAAGGATTCTTGGCAGTTCATCAGCTCATCAACCCTTCTCTCTCTATTTTCTGT | |||||||||
gi|222372185|gb|GH732801.1|GH732801 OV.112M20F010309 OV Triticum aestivum cDNA clone OV112M20, mRNA sequence TCCCTCTGCAAAGAAATATAA EST sequence (targeted fragment marked with yellow): AAGCAAGACCAGTATCTTTATGCTTCCAGTTATTGGTTGGGCAATGTATCTCTTGGGTGTCATTCCTTTACGGCGTATGGACAGCAGGAGCCAGCTGGACTGTCTTAAACGGTGTGTGGATTTGGTGAAAAGGGGGGCGTCTGTATTTTTCTTTCCAGAGGGAACTCGAAGTAAAGATGGAAAGCTAGGTATATTCAAGGTTAGGTTCCGTCGAATGTGATTTTACTCTTGTGTAGCTTTCAGTTCCGTGAAGTACTGACATTTCATAATTATCCCCAGCGAGGAGCATTTAGTGTCGCAGCGAAGACTGGCGTTCCTGTCATACCTATTACCCTTCTCGGGACAGGGAAATTGATGCCTCCTGGAATGGAAAGCAACCTTAATTCAGGTTCAGTACAAGTCATTATTCACCGTCCAATTGAAGGGAATGATGCAGAGAAATTATGTACCGACGCAAGGAATGTGATAGCAGACACTCTTCTTCTACATGGTTATGGAGTGCACTAATGGAAGTGGGTGATTTTTCCTATTCAATGGATCATGGAACCTAGTTTGCCGAAACGTGTCGACTGAAGGCAAAGATAGTTTACAGGTACACGTTACTGACTAGTTCGATATTNTGAGAATCCATAGGAAATGCTATTTGCTTCTTAAGAAGAACAGCTTTTTTGAAATGAAAGAGTTTCCACGGGCGTCGTATATCATTTG | |||||||||
gi|282836256|gb|FL488868.1|FL488868 CWFTAALSCS-95A1-T7_M23_G12 Wheat anther full-length cDNA library Triticum aestivum cDNA clon TCCCTCTGCAAAGAAATATAA EST sequence (targeted fragment marked with yellow): GGGCTCGAAGACTATGTGCTCCCTCTATAAAGAAATACCTATCTTATATACCTATCTTATATTTCTTTACAGAGAGAGTAGAAGATGCACCTTCAAATATAAGATACATATTTCTTTACAGAGGGAGTAGAAGACATGAACAATACATGTATTGGTTAATAACTAAAGGTGCGCCTTCAAATAAATACATTTAAGAAAAAGTAAAAATGAAAGGACGGATATAACGTGCTTCTGCCGGGGCGAGGACGACGGCAATGGCGAAGTGGACGTCCGACTCGGTGGCTGGCGCTTCTCCAGTCGTTGGCAACGGCGTGCTCTTTTGAGAAATATGTAGGCCTGCTCATGCACCCTGCACTATTGTTGTTGTCACTGGATCAGACCTACACTTTGATCAACAAACATAAAAACAAATAGAAGGACACATGGGGGGGGGGGG | |||||||||
gi|239861800|gb|GR304014.1|GR304014 WRIS_3526 cDNA library of a compatible interaction between stripe rust (Puccinia striiformis TCCCTCTGCAAAGAAATATAA EST sequence (targeted fragment marked with yellow): GTTGGTACCCGGGATTCGGCCATTACGGCCGGGGAAGCTACAGACAACTGTATAAATTTGAAGAAGCCAGATTAGCAATTTAAGATTAGCAATTTATGCATGTAGCCGAAGCTGTGTTGGCGGAGACATGAATTTCCAGCATTCTGGTGTTTACTCTCTTGTACAAGCCTCTAAAATGTCTTGTACAAGCCTCTAAAATGTGTTATATTTGTTTACAGAGGGAGTAGTTCCTAATGTCTTGACAGTTTCCAACCTAGATTTGTCGACAGTAATGTTGTCTTGTTTTAACTTGCGTGCATTGATACTCCATGAGCACTTGCTGGATGAGTTATTAAAGTTCAGTGTTGTAAC | |||||||||
gi|143801949|gb|CJ967870.1|CJ967870 CJ967870 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul8o18 TCCCTCTGCAAAGAAATATAA EST sequence (targeted fragment marked with yellow): CTGTGATCAAGGTGGAACGTCGTCCTTGAGTACCTGGCTTCAGTATTCAATACAAGTCATGTGCTTATTGTAGTGATCAGTACTCCCTCCGTAAAGAAATATAAGAGCGTTTAAATTACTTCTTTAGTGATCTAAACACTCTTATATTTCTTTACAGAGGGAATACTTATTTGTACTCCATTGTGACCATGAAGCCATGTCGTTCCGAGATACTTGTAGTTTCCTGATTTGGATCCAA | |||||||||