mature miRNA: TCCGGAGGGATGCCTTCCTTG species: Brassica oleracea database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|122036181|gb|EH425046.1|EH425046 OL6850R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabr TCCGGAGGGATGCCTTCCTTG EST sequence (targeted fragment marked with yellow): AGCTTACAGTGAGCTAAAGAGAGAGACAATGGCGGAGAGGTCAGAGGAAGTGAAGCTACTCGGGATGTGGGCAAGTCCTTTCAGCCGCCGGGTCGAGATAGCTCTCACCCTCAAAGGTTTACCATACGAATTCTCCGAGCAAGATATCGCCAACAAGAGCCCTTTGCTACTCCAATCAAACCCGGTTCACAAGATGATTCCGGTTCTTCTCCATAACGGTAAACCAATCTCCGAATCACTCGTGATCCTTGAGTACATCGATGATACATGGCAACACAATCAAATCCTGCCTCAAGATCCGTACGACAAAGCTATAGCTCGGTTTTGGGCCAGATTCGTCGATGAACAGATTTATGTGACGGCGATGAAAGTGGTGGGGAAGGTTGGAGAAGAAAGAGACGCGGCGGTGGAAGCGACCAGAGATTTATTGAAGTTGATGGAGAAAGAGCTTGTGGGTAAAGACTTTCTCGGTGGGGAAAGCTTGGGGTTCGTGGACATAGTTGCAACTTTGGTGGCGTTTTGGCTGATGAGAACGGAAGAGGTCGTTGGAGTCAAGGTTGTTCCGGTGGAGATGTTCCCAGAGATTCACAGATGGGTGAAGAATCTGTTGGACGTTGATGTCATCAAGAAATGTATCCCTCCTGAAGATGAAACATCTCACTACATAAG | |||||||||
gi|112354240|gb|AM390071.1|AM390071 AM390071 AAFC_WHRI_BoE02a Brassica oleracea var. alboglabra cDNA clone AAFC_WHRI_BoE02a010I0 TCCGGAGGGATGCCTTCCTTG EST sequence (targeted fragment marked with yellow): GCGTCCGGNNATTCGATAANNNNAATCAAATTCTATCTCAATCTCAAGCTTCGATCAAGATGCAGATCTTCGTGAAAACTCTCACCGGGAAGACCATCACCCTCGAGGTGGAAAGCTCTGACACCATCGACAACGTTAAAGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAGCAGAGGCTTATCTTTGCTGGAAAGCAGTTGGAAGACGGGAGAACCTTGGCTGACTACAACATCCAGAAGGAGTCTACGCTTCACTTGGTCCTCAGGCTTCGTGGTGGTATGCAGATCTTCGTCAAGACCCTTACCGGAAAGACGATCACTTTGGAGGTGGAGAGCTCTGACACCATCGATAACGTTAAGGCCAAGATCCAGGATAAGGAGGGAATCCCACCGGACCAGCAGNGGTTGATCTTTGCCGGCAAGCAGTTGGAGGATGGCAGGACCTTGGCCGACTACAACATTCAGAAAGAGTCGACCCTTCACCTGGTCTTGCGTCTACGTGGAGGCATGCAAATCTTCGTGAAGACTTTAACAGGAAAGNNNATCACTCTAGNGNTNGAGAGTTCCGANNNCATTGACAACGTGAAAGC | |||||||||
gi|308680730|gb|DK513753.1|DK513753 DK513753 full-length kale cDNA library (capsules) Brassica oleracea var. acephala cDNA clone TCCGGAGGGATGCCTTCCTTG EST sequence (targeted fragment marked with yellow): GAGAACCATCATCCTCCTCCATTGTTCCCGGCATAACTAAAGCTATGGAGATCGAGAGAGTCCAAGACATTTCATCATCTTCCCTCCACACCGAAGCCATCCCTCTGGAGTTCATCAGATCGGAGAAAGAACAGCCGGCGATCACCACTTTCCGAGGCCCGGTGCCGGCGATCCCCGTCGTCGACCTGAGCGACCCCGACGAAGAGAGCGTGGCGCGTGCGGTGGTGAAGGCGAGTGAAGAATGGGGGATTTTCCAGGTGGTTAATCACGGGATTCCCACGGAGCTGATAAAACGGTTGCAGGAAGTGGGGAGAACGTTCTTCGAGCTTCCTTCCTCGGAGAAAGAGTCCGTCGCGAAGCCCGTAGATGCGAAAGACATCGAAGGGTATGGAACGAAGCTACAGAAAGAAGTAGAAGGTAAGAAAGCATGGGTTGATCATCTCTTCCACAGGATCTGGCCACCGTCGTGCGTTAACTACAGTTTCTGGCCAAAGAATCCACCTGAGTACAGAGAGGTGAACGAAGAGTACGCGTTGCATGTGAAGAAGCTGTCCGAGACATTGTTAGGTATACTCTCGGAAGGGTTAGGCTTACGTCGTGAGGCGTTGAGAGAAGGTCTCGGCGGAGATCTGGCGGAGTATATGATGAAGATTAACTATTATCCGCCGTGTCCTCGGCCGGACTTAGCCTTGGGAGTACCGGCACATACTGATCTAAGTGGAATCACTCTGCTTGTACCTAATGAAGTTCCTGGACTTCAAGTATTCAAAGACGATCACTGGTTTCGACGCCGAGTATATTCCTTC | |||||||||
gi|122026177|gb|EH415042.1|EH415042 OL1650R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabr TCCGGAGGGATGCCTTCCTTG EST sequence (targeted fragment marked with yellow): GAACGCGTCCGGAGAGCTCTCACACTATTGATAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATCCCACCGGACCAGCAGAGGTTGATCTTTGCCGGCAAGCAGTTGGAGGATGGAAGGACTCTTGCTGACTACAACATCCAGAAAGAATCTACCCTCCATCTCGTCCTCAGGCTCCGTGGTGGCATGCAAATTTTTGTCAAGACCTTGACGGGGAAGACGATTACTTTGGAGGTGGAGAGCTCAGACACTATTGACAACGTGAAAGCCAAGATCCAAGACAAGGAGGGGATCCCACCGGACCAGCAGAGGTTGATCTTTGCCGGCAAGCAGTTGGAGGATGGAAGGACTCTAGCTGACTACAACATCCAGAAAGAATCTACGCTTCACCTGGTCTTACGTCTACGTGGAGGTATGCAGATATTTGTCAAGACCCTTACCGGCAAGACCATCACATTGGAGGTTGAGAGTTCGGACACTATTGATAACGTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCAGACCAGCAGCGTCTCATCTTCGCTGGCAAACAGCTCGAGGATGGTCGTACTTTGGGCGACTACAACATCCAGAAGGAGTCAACTC | |||||||||
gi|95857737|gb|DY027526.1|DY027526 47RDOAH_UP_023_A03_14AUG2004_031 O. Alba 47RDOAH Brassica oleracea cDNA 5', mRNA sequence TCCGGAGGGATGCCTTCCTTG EST sequence (targeted fragment marked with yellow): GATCCAAGACAAGGAAGGCATTCCTCCGGACCAGCAGAGATTGATCTTTGCCGGAAAGCAGCTTGAAGACGGTCGTACCTTAGCTGACTACAACATCCAGAAGGAGTCTACGCTTCACTTGGTGCTGCGTCTGCGTGGTGGCATGCAGATCTTCGTGAAGACTCTTACCGGCAAGACCATCACACTGGAGGTGGAGAGCTCCGACACTATTGATAACGTGAAGGCCAAGATCCAAGACAACGAAGGCATCCCTCCGGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACCTTAGCAGACTACAACATTCAAAAGGAGTCGACCCTTCACTTGGTCCTAAGGCTCCGTGGTGGTTTCTGAAACTATTGTCCTGTGTTTGATCAAAAATCAAATGTCTCTGTTTACTTGCCCTTCTCGTTTTCTTTGAAACTTTTCATGGTTTGTGTTTGGGGCCTTGTAAATCCCCTGGATGAATAATTGATAGAACTATGTTTGCGTCCTTATTTCTCTTTCAGTTCCAAGACATGTCGAATTGCATTTATGTGCTTTGTTTGGGTCCAAATGTATTGCGTTTTGGGAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|150134129|gb|EE535092.1|EE535092 49RDOAT_UP_018_H04_01OCT2004_018 O. Alba 49RDOAT Brassica oleracea cDNA 5', mRNA sequence TCCGGAGGGATGCCTTCCTTG EST sequence (targeted fragment marked with yellow): GATCCAAGACAAGGAAGGCATCCCGCCGGACCAGCAGCGGCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGCAGGACCCTCGCCGACTACAACATCCAGAAGGAGTCGACGCTTCACCTCGTCCTCCGCCTCCGCGGTGGCGCGAAGAAGAGGAAGAAGAAGACGTACACCAAGCCCAAGAAGATTCAAGCACAAGCACAAGAAGGTGAAGCTCGCGGTGCTCCAGTTCTACAAGGTCGATGGGTCTGGTAAGGTGCAGAGGCTGAGGAAAGAGTGTCCTAACGCCACTTGTGGGGCTGGGACGTTCATGGCGAGTCAATTTCGATCGTCATTTACTGTGGTAAGTGTGGGCTTACTTACGTT | |||||||||
gi|122042122|gb|EH430987.1|EH430987 OL9928R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabr TCCGGAGGGATGCCTTCCTTG EST sequence (targeted fragment marked with yellow): CGCGTCCGCTTCGTTAAGACTCTCACCGGAAAGACCATCACCCTCGAGGTGGAGAGCTCGGACACCATCGACAACGTCAAAGCCAAGATCCAGGATAAGGAAGGCATCCCCCCGGAGGAGCAGAGGTTGATCTTCGCCGGAAAGCAGTTGGAGGATGGACGTACTCTCGCTGACTACAACATCCAGAAGGAGTCTACTCTCCACTTGGTGTTGCGTCTACGTGGAGGCATGCAGATCTTTGTCAAGACACTGACGGGAAAGACGATCACTCTAGAGGTCGAGAGTTCCGACACTATTGACAATGTGAAAACCAAGATCCGGGACAAGGAAGGGATCCCTCCGGACCAGCAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGTCGCACCCTTGCCGACACAACATCCAGAAGAGCTCTCT | |||||||||
gi|150908137|gb|ES938595.1|ES938595 46RDOAG_UP_064_H07_01FEB2006_049 Brassica oleracea 46RDOAG Brassica oleracea cDNA 5', mRNA s TCCGGAGGGATGCCTTCCTTG EST sequence (targeted fragment marked with yellow): GGCGGAAGGAAGGAAAGAAGAGACGAACAGAAAGATGCAGATCTTCGTGAAAACCCTAACCGGAAAGACAATCACCCTCGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCTCCGGATCAGCAGAGGTTGATCTTCGCTGGAAAGCAGCTCGAAGATGGCCGTACTTTGGCTGACTACAACATCCAGAAAGAGTCAACGCTTCATCTTGTGTTGAGGCTTAGGGGAGGTATCATCGAGCCTTCTTTGATGGCCTTGGCGCGTAAGTACAACCAGGACAAGATGATTTGCCGCAAGTGCTATGCTCGTCTTCACCCAAGGGCTGTGAACTGCAGGAAGAAGAAGTGTGGCCATAGCAACCAGTTGAGGCCTAAGAAGAAGATCAAGTAGACTCGTATCAAGAACCTGTTCTTGCTTCTTTTTTTTGTTGTTTCGTCTTGCCCTTGATAAGGTTGTTTTTGCTTCAGTAAAATTTGATGTTCAAAGATTATATCAGTAAAAGGATTTGGTTTTCTAATC | |||||||||
gi|308650476|gb|DK484916.1|DK484916 DK484916 full-length kale cDNA library (leaves) Brassica oleracea var. acephala cDNA clone K TCCGGAGGGATGCCTTCCTTG EST sequence (targeted fragment marked with yellow): GTCAGCCGTTTGTTTGTTAGCACCGCCGCAAAGATGCAGATCTTCGTTAAAACCCTAACGGGGAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGACCAGCAGCGACTGATCTTCGCCGGGAAACAGCTGGAAGACGGCCGTACCCTCGCCGACTACAACATCCAGAAGGAGTCGACGCTTCATCTCGTCCTCCGTCTCCGTGGTGGTGCCAAGAAGAGGAAGAAGAAGACGTACACCAAGCCGAAGAAGATCAAGCACAAGCACAAGAAGGTGAAGCTCGCGGTGCTCCAGTTCTACAAGGTCGATGGATCTGGTAAAGTGCAGAGGCTGAGGAAAGAGTGTCCTAACGCGACTTGCGGTGCTGGAACTTTCATGGCGAGTCATTTCGATCGTCATTACTGTGGTAAGTGTGGGCTTACTTACGTTTACCAGAAAGAGGGAGCTGAAGCATGATCTCTCTCTCGCTGTCTCTTTTTTCTCTATCTTTAATTTCGTTTTTTGGTAATTTCATAAACTTGTAATGGATTCGATGTTTGAACATGTTTTGCTCTGGATTTTTTTTATCTAGATCGATGAGTTTTATAAGGTGTTTAAAAAAAAAAAAG | |||||||||
gi|308716365|gb|DK472600.1|DK472600 DK472600 full-length kale cDNA library (flowers) Brassica oleracea var. acephala cDNA clone TCCGGAGGGATGCCTTCCTTG EST sequence (targeted fragment marked with yellow): GACAAATTAAAAGTTTCGAAATTCGATAATCATAATCAAATTCTATCTCAATCTCAAGCTTCGATCAAGATGCAGATCTTCGTGAAAACTCTCACCGGAAAGACCATCACCCTCGAGGTGGAAAGCTCTGACACCATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAGCAGAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGGAGAACCTTGGCTGACTACAACATCCAGAAGGAGTCTACGCTTCACTTGGTCCTCAGGCTCCGTGGTGGCATGCAGATCTTCGTCAAGACCCTTACCGGAAAGACGATCACTTTGGAGGTGGAGAGCTCTGACACTATTGACAATGTGAAAGCCAAGATCCAGGACAAAGAGGGTATTCCTCCGGACCAGCAGAGGCTTATCTTTGCCGGCAAGCAGTTGGAGGATGGTCGCACCCTTGCTGACTACAATATTCAGAAGGAGTCCACTTTACATCTCGTGCTCAGGCTCCGTGGAGGTATGCAGATCTTCGTTAAGACTTTGACGGGGAAGACGATCACTTTGGAGGTGGAGAGCTCAGACACTATTGACAATGTCAAAGCCAAGATCCAAGACAAAGAGGGTATTCCTCCGGACCAGCAGAGGCTTATCTTTGCCGGAAAACAGTTGGAAGATGGCAGGACCTTGGCCGATTACAACATTCAGAAAGAGTCGACCCTTCACCTGGTCTTGCGTCTACGTGGAGGCATGCAAATCTTCGTGAAGACTTTAACAGGAAAGACGATC | |||||||||
gi|308634506|gb|DK500100.1|DK500100 DK500100 full-length kale cDNA library (seedlings) Brassica oleracea var. acephala cDNA clon TCCGGAGGGATGCCTTCCTTG EST sequence (targeted fragment marked with yellow): GACAAATTAAAAGTTTCGAAATTCGATAATCATAATCAATTCTATCTCAATCTCAAGCTTCGATCAAGATGCAGATCTTCGTGAAAACTCTCACCGGGAAGACCATCACCCTCGAGGTGGAAAGCTCTGACACCATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAGCAGAGGCTTATCTTTGCTAGAAAGCAGTTGGAAGACGGGAGAACCTTGGCTGACTACAACATCCAGAAGGAGTCTACGCTTCACTTGGTCCTCAGGCTCCGTGGTGGCATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACTATCACTTTGGAGGTGGAGAGCTCTGACACCATCGATAACGTTAAGGCCAAGATCCAGGATAAGGAGGGAATCCCACCGGACCAGCAGAGGTTGATCTTTGCCGGCAAGCAGTTGGAGGATGGTCGCACCCTTGCTGACTACAACATTCAGAAGGAGTCCACTTTACATCTCGTGCTCAGGCTCCGTGGAGGTATGCAGATCTTCGTTAAGACTTTGACGGGGAAGACGATCACTTTGGAGGTGGAGAGCTCTGACACTATTGACAATGTCAAAGCCAAGATCCAAGACAAAGAGGGTATTCCTCCGGACCAGCAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGCAGGACCTTGGCCGATTACAACATTCAGAAAGAGTCGACCCTTCACCTGGTCTTGCGTCTACGTGGAGGCATGCAAATCTTCGTGAAGACTTTAACAGGAAAGACGATCACTCTAGAGGTGGAGAGTTCCGACACCATTGACAACGTGAAG | |||||||||
gi|112357765|gb|AM392174.1|AM392174 AM392174 AAFC_WHRI_BoE02a Brassica oleracea var. alboglabra cDNA clone AAFC_WHRI_BoE02a020G1 TCCGGAGGGATGCCTTCCTTG EST sequence (targeted fragment marked with yellow): GCGTCCGCTCTCTCTCTCTCTCTCTCTCTCTCGAATTACGATCAAGATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTGGAGAGCTCGGACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCACCGGACCAGCAAAGGCTTATCTTCGCCGGGAAGCAACTCGAGGATGGACGTACTCTCGCTGATTACAACATCCAGAAGGAGTCGACCCTTCATCTCGTCCTCAGGCTCCGCGGTGGTATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACACTCGAGGTGGAGAGCTCCGACACCATCGACAACGTCAAAGCTAAGATCCAAGACAAGGAGGGTATTCCTCCCGACCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTCGAGGATGGTCGTACCTTGGCTGACTACAACATTCAGAAAGAGTCGACCCTTCACTTGGTGTTGCGTCTCCGTGGTGGCATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACGATCACCCTCGAAGTTGAGAGCTCCGACACCATTGACAACGTCNNGGCTAAGNTTCAGGACAAGGAGGGAATCCCTCCAGNNNNNCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGTACCTTGGCTG | |||||||||
gi|112355696|gb|AM391144.1|AM391144 AM391144 AAFC_WHRI_BoE02a Brassica oleracea var. alboglabra cDNA clone AAFC_WHRI_BoE02a015J0 TCCGGAGGGATGCCTTCCTTG EST sequence (targeted fragment marked with yellow): GCGTCCGAATTCGATAATNNNAATCAAATTCTATCTCAATCTCAAGCTTCGATCAAGATGCAGATCTTCGTGAAAACTCTCACCGGGAAGACCATCACCCTCGAGGTGGAAAGCTCTGACACCATCGACAACGTTAAAGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAGCAGAGGCTTATCTTTGCTGGAAAGCAGTTGGAAGACGGGAGAACCTTGGCTGACTACAACATCCAGAAGGAGTCTACGCTTCACTTGGTCCTCAGGCTTCGTGGTGGTATGCAGATCTTCGTCAAGACCCTTACCGGAAAGACGATCACTTTGGAGGTGGAGAGCTCTGACACCATCGATAACGTTAAGGCCAAGATCCAGGATAAGGAGGGAATCCCACCGGACCAGCAGAGGTTGATCTTTGCCGGCAAGCAGTTGGAGGATGGCAGGACCTTGGCCGACTACAACATTCAGAAAGAGTCGACCCTTCACCTGGTCTTGCGTCTACGTGGAGGCATGCAAATCTTCGTGAAGACTTTAACAGGAAAGACGATCACTCTAGAGGTGGAGAGTTCCGACACCATTGACAACGTGAAAGCCAAAATCCAGGACAAAGAGGGTATTCCTCCGGANNNNCAGCGTCTCATCTTCGCT | |||||||||
gi|112356756|gb|AM392003.1|AM392003 AM392003 AAFC_WHRI_BoE02a Brassica oleracea var. alboglabra cDNA clone AAFC_WHRI_BoE02a019J2 TCCGGAGGGATGCCTTCCTTG |