| mature miRNA: TCCGGCAAGTTGTCCTTGGCT species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|218504711|gb|FG953266.1|FG953266 MA_PA64s_01077 Mature embryo cDNA Library of PA64s Oryza sativa Indica Group cDNA 5', mRNA s TCCGGCAAGTTGTCCTTGGCT EST sequence (targeted fragment marked with yellow): GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAATCAAAGGATATTCAAGGAATACCATGGGAGAAGCTAGCGATCACACGTGATAAATACAGACAGACCAGATTAGATCAGTACAAGAATTATGAGAACATGCCTAATTCTGGAGAAGCAGCCGCAAAGGAATGCAAACCGACTGCAAAAGGCGGGATGTATTATGAATTTAGGCGAAATACTAGATCAGTAAAATCAACTATACTGCATTTTCAGCTGAGAAATTTAGTATGGGCGACATCCAAGCACGATGTCTATTTAATGTCACATTTCTCTGTTCTTCATTGGTCGGCACTGAGTGGTCTTGATACCGAGCTTATGAATGTCCAAGGACATGTGGCACCCAGGGAGAAGCACCCTGGAAGTTTACTTGAGGGCTTTTCTGGGACCCAAGTTAGTACCTTGTCAGTCAAGGACAATTTGCTGGTAGCTGGTGGGTTTCAAGGAGAGCTAATCTGCAAGCACCTTGATCGAGAAAGAATTAGCTTTTGCTGTCGAACTACATATGATGAAAACGCT | |||||||||
gi|218486397|gb|FG950828.1|FG950828 MA_93-11_07723 Mature embryo cDNA Library of 93-11 Oryza sativa Indica Group cDNA 5', mRNA s TCCGGCAAGTTGTCCTTGGCT EST sequence (targeted fragment marked with yellow): AATTCGAATTCGAGGGGCAGGAATGGCGGCGCGGCACCTCAGATCCGGCCTCCCCCTCCTCCGCGCCCACCTCTCCCAGGAGGGCTCAAGGGGCTTCGCGTCGCAGGTGGCAAAGCCGACCGGGAAGGATATCAAGGTTCCAGAAGCTCTGTATGGTGGCACCGGCAACTATGCTAGTGCTCTGTTCCTTACAGCGGCCAAAGCTAACTTGCTGGACAAAGTTGAAACTGAGATTCGCGATGTTGTAGAGGCATCCAAGAAGAGTCCATTGTTTTCTCAATTCATTAAGGACTTGTCAGTGCCCAAAGAGACCAGGGTGAAGGCAATAACTGAAATTTTCGCTGAAGCTGGTTTTTCAGATGTCACAAAGAATTTCTTGGCTGTGCTCGCCGACAATGGCAGACTGAAGCACATTGATCGCATTGCTGAGAGATTTGTTGATTTGACCATGGCACATAAGGGGGAGGTGAAGGTCCTTGTCAGGACAGTTATTCCACTCCCCGAAAAAGAGGAGAAGGAACTTAAGGAGACCTTGCAAGATATTCTTGGGAAGAACAAAACTATCTTGATTGAACAGAAGATTGACTACAGCATCATGGGAAGGCTAGTTATTCAATTT | |||||||||
gi|88315426|gb|CI613695.1|CI613695 CI613695 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone TCCGGCAAGTTGTCCTTGGCT EST sequence (targeted fragment marked with yellow): CTCTCCTCACCTCGATCTCCTCCTCCTCCTCCTCCGCCGCACCGAGGGTTTCGCCTCCGCCTTCCACCGCTGCCGGAGAGGGGACGAACCGAGGGGCAGGAATGGCGGGGCGGCACCTCAGATCCGGCCTCCCCCTCCTCCGCGCCCACCTCTCCCAGGAGGGCTCAAGGGGCTTCGCGTCGCAGGTGGCAAAGCCGACCGGGAAGGATATCAAGGTTCCAGAAGCTCTGTATGGTGGCACCGGCAACTATGCTAGTGCTCTGTTCCTTACAGGGGCCAAAGCTAACTTGCTGGACAAAGTTGAAACTGAGATTCGCGATGTTGTAGAGGCATCCAAGAAGAGTCCATTGTTTTCTCAATTCATTAAGGACTTGTCAGTGCCCAAAGAGACCAG | |||||||||
gi|218501212|gb|FG955432.1|FG955432 MA_PA64s_03243 Mature embryo cDNA Library of PA64s Oryza sativa Indica Group cDNA 5', mRNA s TCCGGCAAGTTGTCCTTGGCT EST sequence (targeted fragment marked with yellow): AACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGAATTGAATGTCCAAGACATGTGGCACCCAGGAGAAGCACCCTGGAAGTTACTTGAGGGCTTTTCTGGGACCCAAGTAGTACCTTGTCAGTCAAGGACAATTTGCTGGTAGCTGGTGGGTTTCAAGGAGAGCTAATCTGCAAGCACCTTGATCGAGAAGGAATTAGCTTTTGCTGTCGAACTACATATGATGAAAACGCTATTACTAATGCTGTTGAGATATTCAATACTACCAGTGGTGCTGTTCACTTCATGGCATCGAATAATGACTCTGGTGTAAGAGACTATGATATGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAATCATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGATCCTAATGGTTTACTAATTGACGCCAATTCAGGAAAGACTCTTCATTCCTTGAAAGGTCACTTTGATTACTCGTTTGCATCAGCTTGGAGCCCAGATGGCAGAACATTTGCTACTGGCAACCAAGATAAGACATGCCGGATTTGGGATGCGCGGAATCTCTCTAAATCCCTCCATGTTTTGAGGGGTAACCTTGGAGCCATAAGATC | |||||||||
gi|29658064|gb|CB654339.1|CB654339 OSJNEc06I07.r OSJNEc Oryza sativa Japonica Group cDNA clone OSJNEc06I07 3', mRNA sequence TCCGGCAAGTTGTCCTTGGCT EST sequence (targeted fragment marked with yellow): CTCCACAGAAGGATCCCCCCTGCGGTCCCCGGCATAATGTTCTTGTCGGGTGGGCAGTCGGAGGTGGAGGTGTCGCAGAACCTGAACGCGATGAACCAGGGGCCCAACCCGTGGCACGTGTTGTTATGGTACGTGAGGGCGCTGCAGAACACGTCCCTCAAGATGTGGGGCGGGCAGCCGGAGAACGTGAAGGCGGAGCAGGACGTGCTGTTCTTCCGCGCCAAGGCCAACTTGCTGGCGCAGCTAGGCAAGTACACCATCGACGGAGAGGCCTCCGAGGCCAAGGAGGGCATGTTCGTCAAGAAGTCAGTCTACTAATCCGATCCAATCCAATCAAGACAGT | |||||||||
gi|87005511|gb|CI287335.1|CI287335 CI287335 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c TCCGGCAAGTTGTCCTTGGCT EST sequence (targeted fragment marked with yellow): ATCGCCTCCATAATTTTCTTTCCCCTCCTCTCCTCACCTCGATCTCCTCCTCCTCCTCCTCCGCCGCACCGAGGGTTTCGCCTCCGCCTTCCACCGCTGCCGCAGAGGGGACGAACCGAGGGGCAGGAATGGCGGCGCGGCACCTCAGATCCGGCCTCCCCCTCCTCCGCGCCCACCTCTCCCAGGAGGGCTCAAGGGGCTTCGCGTCGCAGGTGGCAAAGCCGACCGGGAAGGATATCAAGGTTCCAGAAGCTCTGTATGGTGGCACCGGCAACTATGCTAGTGCTCTGTTCCTTACAGCGGCCAAAGCTAACTTGCTGGA | |||||||||
gi|88363382|gb|CI643240.1|CI643240 CI643240 Oryza sativa (japonica cultivar-group) leaf of seedling gamma-irradiated(45Gy), immi TCCGGCAAGTTGTCCTTGGCT EST sequence (targeted fragment marked with yellow): ATAATTTTCTTTCCCCTCCTCTCCTCACCTCGATCTCCTCCTCCTCCTCCTCCGCCGCACCGAGGGTTTCGCCTCCGCCTTCCACCGCTGCCGCAGAGGGGACGAACCGAGGGGCAGGAATGGCGGCGCGGCACCTCAGATCCGGCCTCCCCCTCCTCCGCGCCCACCTCTCCCAGGAGGGCTCAAGGGGCTTCGCGTCGCAGGTGGCAAAGCCGACCGGGAAGGATATCAAGGTTCCAGAAGCTCTGTATGGTGGCACCGGCAACTATGCTAGTGCTCTGTTCCTTACAGCGGCCAAAGCTAACTTGCTGGACAAAGTTGAAACTGAGATTCGCGATGTNGTAGAGGCATCCAAGAAGAGTCCATTGTTTCCTCAATTCATTAAGGACTTGTC | |||||||||
gi|88722024|gb|CI745351.1|CI745351 CI745351 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro TCCGGCAAGTTGTCCTTGGCT EST sequence (targeted fragment marked with yellow): GAGCTCCGTCTCTCCTCTTCCGCATCGCCTCCATAATTTTCTTTCCCCTCCTCTCCTCACCTCGATCTCCTCCTCCTCCTCCTCCGCCGCACCGAGGGTTTCGCCTCCGCCTTCCACCGCTGCCGCAGAGGGGACGAACCGAGGGGCAGGAATGGCGGCGCGGCACCTCAGATCCGGCCTCCCCCTCCTCCGCGCCCACCTCTCCCAGGAGGGCTCAAGGGGCTTCGCGTCGCAGGTGGCAAAGCCGACCGGGAAGGATATCAAGGTTCCAGAAGCTCTGTATGGTGGCACCGGCAACTATGCTAGTGCTCTGTTCCTTACAGCGGCCAAAGCTAACTTGCTGGACAAAGTTGAAA | |||||||||
gi|29672638|gb|CB668913.1|CB668913 OSJNEd16P24.f OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd16P24 5', mRNA sequence TCCGGCAAGTTGTCCTTGGCT EST sequence (targeted fragment marked with yellow): ATGACATGGGCGACCAGAACTATGAGCGAGGGATGAGGGATTCGGATTCAGAGGATGAAGAGCATGGCCAGTCGAATGATAAGATCCCAGATACCTCATCAGTTGATGCAAGAAAAGGAAAGGATATTCAAGGAATACCATGGGAGAAGCTAGCGATCACACGTGATAAATACAGACAGACCAGATTAGATCAGTACAAGAATTATGAGAACATGCCTAATTCTGGAGAAGCAGCCGCAAAGGAATGCAAACCGACTGAAAAAGGCGGGATGTATTATGAATTTACGCGAAATACTAGATCAGTAAAATCAACTATACTACATTTTCAGCTGACAAATTTAGTATGGGCGACATCCAAGCACGATGTCTATTTAATGTCACATTTCTCTGTTCTTCATTGGTCGGCACTGAGTGGTCTTGATACCGAGCTTATGAATGTCCAAGGACATGTGGCACCCAGGGAGAAGCACCCTGGAAGTTTACTTGAGGGTTTTTCTGGGACCCAAGTTAGTACCTTGTCAGTCAAGGACAATTTGCTGGTAGCTGGTGGGTTTCAAGGAGAGCTAATCTGCAAGCACCTTGATCGAGAAGGAATTAGCTTTTGCTGTCGAACTACATATGATGAAAACGCTATTACTAGTGCTGTTGAGATATTCAATACTACCAGTGGTGCTGTTCACTTCATGGCATCGAATAATGACTCTGGTGTAAGAGACTATGATATGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATG | |||||||||
gi|87012216|gb|CI291671.1|CI291671 CI291671 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c TCCGGCAAGTTGTCCTTGGCT EST sequence (targeted fragment marked with yellow): ATAATTTTCTTTCCCCTCCTCTCCTCACCTCGATCTCCTCCTCCTCCTCCTCCGCCGCACCGAGGGTTTCGCCTCCGCCTTCCACCGCTGCCGCAGAGGGGACGAACCGAGGGGCAGGAATGGCGGCGCGGCACCTCAGATCCGGCCTCCCCCTCCTCCGCGCCCACCTCTCCCAGGAGGGCTCAAGGGGCTTCGCGTCGCAGGTGGCAAAGCCGACCGGGAAGGATATCAAGGTTCCAGAAGCTCTGTATGGTGGCACCGGCAACTATGCTAGTGCTCTGTTCCTTACAGCGGCCAAAGCTAACTTGCTGGACAAAGTTGAAA | |||||||||
gi|88371127|gb|CI597604.1|CI597604 CI597604 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone TCCGGCAAGTTGTCCTTGGCT EST sequence (targeted fragment marked with yellow): GTTGGCCTCCATAATTTTCTTTCCCCTCCTCTCCTCACCTCGATCTCCTCCTCCTCCTCCTCCGGCGCACCGAGGGTTTCGCCTCCGCCTTCCACCGCTGCCGCAGAGGGGACGAACCGAGGGGCAGGAATGGCGGGGCGGAACCTCAGATCCGGCCTCCCCCTCCTCCGCGCCCATCTCTCCCAGGAGGGCTCAAGGGGCTTCGCGTCGCAGGTGGGAAAGCCGACCGGGAAGGATATCAAGGTTCCACAAGCTCTGTATGGTGGAACAGGCAACTATGCTAGTGCTCTGTTCCTTACAGCGGCCAAAGCTAACTTGCTGGAAAAAGTTGAAAATGACATTCGCGATGTTGTACAGGCATCCAAGAAGAGTCATTGTTTTCTCAATTCATTAAGG | |||||||||
gi|29621865|gb|CB626876.1|CB626876 OSIIEb01G18.r OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb01G18 3', mRNA sequence TCCGGCAAGTTGTCCTTGGCT EST sequence (targeted fragment marked with yellow): AAGGTGTGGGCGGAGACCTTCTTTTCCATGGCCGAGAACAATGTGATGTTCGAGGGCATCCTCCTCAAGCCAAGCATGGTGACACCCGGTGCCGAGTGCAAGGACAGGGCCTCCCCTGAGCAAGTATCTGTCTACACCCTCAAGCTCCTCCACAGAAGGATCCCCCCTGCCGTCCCCGGCATCATGTTCTTGTCGGGTGGGCACTTGGAGGTGGAGGCGACGCAGAACCTGAACGCGATGAACCAGGGGCCCAACCCGTGGCACGTGTCGTTTTCGTACCCGCCCCCGCTGCAGAACCCGTGCCTCAAGACGTGGGGCGGGCAGCCGGAGAACGTGAAGGCGGCGCAGGACGCGCTGCTCCTCCGCGCCAAGGCCAACTTGCTGGCGCAGCTCGGCAAGTACACCAGCGTCGGCGAGGCCGCCGAGGCCAAGGAGGGCATGTTCGTCAAGAATTACGTCTCCTAATCCGATCCAATCCAATCAAGCCAGTGAACCTGCTGCTGCTGCTGTTACGTTCTACAGCTACTTCTTTGGGGGTAGTACCTCGAGGGCCCTGTAGCCAGCGTGTCGTCACAGTTACAGGTTGAGATCGAT | |||||||||
gi|88521964|gb|CI449688.1|CI449688 CI449688 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro TCCGGCAAGTTGTCCTTGGCT EST sequence (targeted fragment marked with yellow): CACAACTAAACTAATCCTTAATCCCATCAATATATTTCTGGTTTACATTGATATACATCACTGTACATGCATGACCTGGAAGCTAAATGCAAACCATGCAATGGCCTCACGTGAGAGAAAAAGAACAAGACGTAGCCAAGGACAACTTGCCGGAAAATGTCAGCATGGATCTAAAACAGTTGGGGGCACATATAGTACCTTGAAACATGCATACACGTACCGGCAAGTCATCCTTGGCTGCATTCCGTTCTCTATCTCATTTCACGAGTGGCCACTGATAGCCATAACTCATACCTAGCATTGGGTGATAACAAGCACCAAATAGTCTCTCTATACTTCTCTCGGAACTTCTCTAGGATATGCACCACTAGATGATGCATGCCATCGACTGCC | |||||||||
gi|29658570|gb|CB654845.1|CB654845 OSJNEc07K18.r OSJNEc Oryza sativa Japonica Group cDNA clone OSJNEc07K18 3', mRNA sequence TCCGGCAAGTTGTCCTTGGCT EST sequence (targeted fragment marked with yellow): AGCGGCCAAAGCTAACTTGCTGGACAAAGTTGAAACTGAGATTCGCGATGTTGTAGAGGCATCCAAGAAGAGTCCATTGTTTTCTCAATTCATTAAGGACTTGTCAGTGCCCAAAGAGACCAGGGTGAAGGCAATAACTGAAATTTTCGCTGAAGCTGGTTTTTCAGATGTCACAAAGAATTTCTTGGCTGTGCTCGCCGACAATGGCAGACTGAAGCACATTGATCGCATTGCTGAGAGATTTGTTGATTTGACCATGGCACATAAGGGGGAGGTGAAGGTCCTTGTCAGGACAGTTATTCCACTCCCCGAAAAAGAGGAGAAGGAACTTAAGGAGCCCTTGCAAGATATTTTTGGGAAGAACAAAACTATCTTGATTGAACAGAAGATTGACTACAGCATCATGGGAGGGCTAGTTATTCAATTTGGGCAGAAGGTGTTTGATATGTCGATCAAGACTAGGGCGAAGCAAATGGAGATGTTCTTGAGGCAACCCCTTGATATCTAACTCCCTTTTGGATCGAAAGATGCAGTTGTTTTGCTGCTGAAGGCATCCTCATGTCTGTTACTTTGATATGGTCTTGAAATAAATCTTCGTTTACAAGAGAACAACACTCTGTTTTATCTTGTTTTGTGTGCCAGAAGCCTGCTGAACAATTTTATGTCAATTAATGGGCTACTAAGAAAGTTATGCCCCAAAAAAA | |||||||||