| mature miRNA: TCCTCCCTACTCCTCCCATT species: Pinus taeda database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|61668614|gb|DN611114.1|DN611114 EST964164 Subtracted pine embryo library, Lib_B Pinus taeda cDNA clone PSAAX93, mRNA sequence TCCTCCCTACTCCTCCCATT EST sequence (targeted fragment marked with yellow): ACTCAAGTATTTGAGATTAGGAGCTGAGAGGGTTGTTCTCCGCCCGAGAGCAATGTCTGTTCCATGGTGGAGGATGAACGCGCACGCAATAATGTACGTGACTAGAGGGGAGGGGAGAATGGAGGTGGTGGGAGAAGAAGGGAGGAATGTGTTTAATGGGCACGTGAGAGGGGGTCAGTTCATCGTCATTCCCCAGTTCTACGCAGTCATCAGGGAAGCAGGAGACGAAGGGTTGGAGTGGATAACTTTCACAACATCAGACCTTTCATTGCGGTCGTCTCTGGCAGGAAGGCAATCGGTTTTGAAGGCAATGCCGGAGGAAGTGGTGAGAGCCGCTTACAGGATCGACCAAAATGAAGTTGAACAAGTGATGAGGAACAGAGAACGCGACACCTTCATTTTGCCTCCATCATCTACCCGCTCATCCCGTCGATATCAGGCGGACATCATACCAGGTGTCCAGGTGGAATAGAATATTAATATTACCCATGCATTTCACGCACATTCACTGCAACCCTTAATGTGCATAGATATGCAGTCTCGTCCGAATATAGGCCTCCTCACCTCTGCAAATTAAATGTAATCGAAAGAATAATTATAATAATGGATTTACCATCTTTTTGTTCG | |||||||||
gi|61671999|gb|DN614499.1|DN614499 EST967549 Subtracted pine embryo library, Lib_B Pinus taeda cDNA clone PSAC471, mRNA sequence TCCTCCCTACTCCTCCCATT EST sequence (targeted fragment marked with yellow): ACTCAAGTATTTGAGATTAGGAGCTGAGAGGGTTGTTCTCCGCCCGAGAGCAATGTCTGTTCCATGGTGGAGGATGAACGCGCACGCAATAATGTACGTGACTAGAGGGGAGGGGAGAATGGAGGTGGTGGGAGAAGAAGGGAGGAATGTGTTTAA | |||||||||
gi|61666304|gb|DN608804.1|DN608804 EST961854 Subtracted pine embryo library, Lib_B Pinus taeda cDNA clone PSAA452, mRNA sequence TCCTCCCTACTCCTCCCATT EST sequence (targeted fragment marked with yellow): ACCAGGAGAATCCTTTCTGCCAGGGCGTGATAGATCTGCATACCCGCATTGCAAGAAGGAAAATCCAACCCCACAAAAAAAAAATACAGAGCCATCTTTGGCCATATGCTTTCAAAGTCCTGCCTGAAATATTTTATCCCATACAGGGTTTTAATAGATCTATGCTATCAAATATTTAAACTCCAACGAGCTCATATCTCCCTTTCCTCCTTGCCTATCATGGAGGTTCGAAGAATCGTATGACTGTGTCATGCGAGCAGATCTGAAGTGCATCAGCAGCAGAGCTACAAGTGCAGATAAAATAGAGATATGTAGAGAAGGCAATAGGATCCAGGTGAAGTTAAAAAAACCTGTAACAATGCCCAGCTCTCAGATAAGATGCAATCAGGAGCGACTGCATTTGTTTTTTCTCCCCTCCCAGATCCAGTGGCCTTGAAGCTACACGGCATCCCTGTAATACCTGCAGGACATAATCTCCATATTCATCTTCATAGACTATATTGCTGTGTTGCGTTGGAAAGGGAAGTGTGGTGAAGGCAAAAGGAATGGGAGGAGTAGGGAAGACTGGAGCAGAGAATTAATGAAGCAGAGTTTCTCCTTAACCTTAGTCTTACCCTATCCTTCCACACCTCAAGACTTCTAACCATAACACCTCCCTTTCTCGCAACCATCCACCTTCCCTGTTTTCACCCCGCGT | |||||||||
gi|60669253|gb|DN462829.1|DN462829 EST958628 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone RPIIR21 5' end, m TCCTCCCTACTCCTCCCATT EST sequence (targeted fragment marked with yellow): GAACTGCGTGTAAGGCACAATGCTGACAACCCGGAGGATGCCGATGTCTACGTAAGAGATGGGGGACGGATGAATATAGTCAACCGCTACAAACTTCCTGTACTCAAGTATTTGAGATTAGGAGCTGAGAGGGTTGTTCTCCGCCCGAGAGCAATGTCTGTTCCATGGTGGAGGATGAACGCGCACGCAATAATGTACGTGACTAGAGGGGAGGGGAGAATGGAGGTGGTGGGAGAAGAAGGGAGGAATGTGTTTAATGGGCGCGTGAGAGAGGGTCAGTTCATCGTCATTCCCCAGTTCTACGCAGTCATCAGGGAAGCAGGAGACGAAGGGTTGGAGTGGATAACTTTCACAACATCAGACCTTTCATTGCGGTCGTCTCTGGCAGGAAGGCAATCGGTTTTGAAGGCAATGCCGGAGGAAGTGGTGAGAGCCGCTTACAGGATCGACCAAAATGAAGTTGAACAAGTGATGAGGAACAGAGAACGCGACACCTTCATTTTGCCTCCATCATCTACCCGCTCATCCCGTCGATATCAGGCGGACATCATACCAGGTGTCCAGGTGGAATAGAATATTAATATTACCCATGCATTTCACGCACATTCACTGCAACCCTTAATGTGCATAGATATGCAGTCTCGTCCGAATATAGGCCTCCTCACCTCTGCAAATTAAATGTAATCGAAAGAATAATTATAATAATGGATTTACCATCTTTTTGTTC | |||||||||
gi|67557783|gb|DR098428.1|DR098428 STRR1_45_A05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone STRR1_45_A05_A033 5', mRN TCCTCCCTACTCCTCCCATT EST sequence (targeted fragment marked with yellow): TCTTCCTTCCACGTCGTTTGGCTCAGGCTATTCCATTCTCCTCTCACAAGCTCTCAGTAGCCCTGGAGAAACTCAATATATCCCAAGGATCCAACAAGGCTATTGCTATGAAGCATACGTTAGAAGAATGTGAAAATCCTGCAATTAGTGGGGAGAGCAAATTCTGCGCAACATCGTTGGAATCCATGATTGATTACTCCATATTTACACTAGGGACCAATGATGTGAAAGTGCTGGCTACGAATGTAAGGAAGGGGCAGCAATATACAATAACTGGGTTTCCTTTCCTAAGCAAATCTGGTTCCATGTCCGTGGCCTGTCACAAGCAGAGATATGCATATGCTGTGTACTACTGCCATGAAACTGAGCACACAAGCACCGCACTGGTGTCTCTAAAGGGCGAAGATGGCAGTAGTGGGGAGGGAGTTGCAGTGTGTCATACAGACACGAGTGGGTGGAATCCTCAACACTTGGCGTTCAAGGTGCTTAATGTGAAGCCCGGTGGTGCACCCGTTTGCCACTTTATTCCGAATGATCACATCGTCTGGCTTCCTGCCAACTAACAGCTACTACCTTCCATAATTTTCTTCCTGTCTCTTATGTATGCTCCATCTCCACTCCTGTCTAATACGCATACGTATTTCTGATATAATATAAGATAATGTAGTCTCGCAACTATNGGGCTCGTCCTCGTCTCTGTCTTT | |||||||||
gi|6019807|gb|AW064735.1|AW064735 ST35B07 Pine TriplEx shoot tip library Pinus taeda cDNA clone ST35B07, mRNA sequence TCCTCCCTACTCCTC-CCATT EST sequence (targeted fragment marked with yellow): GGCTGCATTTTCTTGCACGCGTGCTTCAGTTAAAACCTCCGTTTTGATTAAGATCCATTTTTTCGCCTCCGGATCCCATTCTTCCTTTGATTTCAATCCAAATCTCCCTTGCAATGGCTGGAGACAATGTTGCCTATGAGGTAGAGGTAGAGGAAGAGGCAGGAAAGATAGAGGAAGAGGCAGGAAAGGCTGTAGCAGAGGAGGAAGATACAGGAGCTCAGGTTGCACCTATTGTTAAACTACAGGAGGTTTCGATNACAAATGGAGAGGAGGAGGGAGGATGTTATGCTTGATATGAAGGCCAAGTTGTATCGGTTTGATAAGGATGGGAATCAGTGGAAAGAGCGTGGAGTTGGAACGGTAAAGCTGTTGAAGCACAAGGAGACTGGGAAGGNCAGATTGGTCATGAGGCAGGCCAAGACCTTGAAAATCTGCGCCAATCATTCAATACTTCCTTCAATCTCAGTTCAAGAGCACAGCGGTAATGAGAAATCCTGTGTCTGGCANGCTCCTGATTCCCGNTGGGGGAANNGAAGGAAAACT | |||||||||