| mature miRNA: TCGAGATGACGTGGACGAATA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|117236349|gb|CT842268.1|CT842268 CT842268 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TCGAGATGACGTGGACGAATA EST sequence (targeted fragment marked with yellow): CACCGCGCGCGCAGCACTCGCAGGAGAGGATCGAGTTAACCAAGTACGAAGCGAGTAGTTAGCGGGCGAGTACGTGGTGTTTGTCATGGAGGACGAGGCGACGTCGGTGGCGGCGCCGCTGCTGCGGCCGCGCGGCGGCGTTGACGCGGAGGCGGTGAAGCAGCAGCTGTGGCCGGCCGGCGCGAGGGTGGCGGGGGAGTGGTGGGTGGAGTCGAAGAAGCTGTGGCGCGTCGTCGGGCCGGCCATCTTCCAGCGGATCGCGCTGTACGGGATCAACGTCGTCTCGCAGGCGTTCATCGGCCACATGGGCGACCTCGAGCTTGCCGCCTTCTCCATCGCCTCCACCGTCGTCGCCGGCTTCAACTGCGTGTATCCTGGTTGATGTGATGAAAAAGGACTGAAGTTTGGATCCAAACTTTAGATCTAAACACAGCCATAGTAAGGTACAACAGATTGCAGTCCTACTTTTATTTCAAGAGCAGGTAGAAGCTGATGACAGGTTGATGTGATGGAAAAGGACTGAAGTTTGGATCCAAACTTTAGATCTAAACACAGCCATAGTAAGGTACAACAGATTGCAGTCCTACTTTTATTTCAAGAGCAGGTAGAAGCTGATGAGAGAACAAAATGCTAACAACAACCCTATGTTTAGGAGGAAATTAGTACCAGCTGGCTGTACAAAAATCACTACTGGAGTAGTACCGTGCATGATTAGCACCAGTTCAGCTCGAGACAAATCAATCACCAGCAGCTGTCTGTTGGGTTGTGTTCACATCATTGCTACTTCCAAACCTTTTTCCCCCGATTTCTTGGTGCTTGTGCCTAAATTCACGCCGAATTCGTGTGTGCGTGGGGGGCACGCGTTTGGGTGGGCAGAGCAGAGCCCAAGCATCGCGGAGGGCTGAGTTGCTGTTTATTCACGTTGTCTCGACTGGCCTGGA | |||||||||
gi|117246867|gb|CT843708.1|CT843708 CT843708 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TCGAGATGACGTGGACGAATA EST sequence (targeted fragment marked with yellow): CGCTGCCGCCCCCTCCGCTGCGTCGTCCTAGGCTCCTAGCTATGTAGCCTTCGTGTCAACGTGCTTGCGTGTCATTGTGTGTAACCGTGCAAGGAGAGGCGTTTGGTGTGCGCCGTTTTGGGGAAAATATGGGGGTGGAAACCACGTACACGATGGAAACTTGAAAACTACCGTTAGATTAAATAATAGACGCTTGAGATTTGTTCACGTCATCACGAGTAAAAATTTTACTCACAGATTTACTCGTGAGTAAAAATTTTACTGTGCGTGATAACGTGGATGATTCTCGAACATTTATTTCTCGATCTAACGGTAGTTTCCACAACATATATGGTCCACTGTATATTTTCTTCCGTTTTGGCGTGTGCGCCATCGATGGAGCAATAACAGTGGACCGTCATGGGTCGTGGGCCTGTGATAGGTTATGTGGGCCACCTCGAATTGGGCCCTTCTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAATAAAAAAAATATGGAAAATTTAAAAAAAAA | |||||||||
gi|117210474|gb|CT861208.1|CT861208 CT861208 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TCGAGATGACGTGGACGAATA EST sequence (targeted fragment marked with yellow): GTAGGCCTTCCAGGCCAGTCGAGGACGACGTGATTTCTCCCGTTCCGTCTCTTCTCCTCTCCTCTTCTTCTCCCCTCTCCTCTCTCCACTTCTCCTCTCACCTCTCGCTACCAAACACGCGCACACGCAGCCGAGAGCGAGAGCGAGCTACTTGCCCTAGCAGCAGCAGCAGCGAGGAGCGCGAGGGGGCGGCGGCGGCGGCGTGCATGGCGGGGGCTCCGTCGAGGTCGCGCGGCGACTTCGACCACCTCATCAAGCTCCTCCTCATCGGCGACAGCGGAGTAGGAAAGAGTTGCTTGCTTCTGAGGTTCTCAGATGACACTTTCACTACAAGTTTTATCACCACCATTGGCATTGATTTCAAGGTTCGGACAGTTGAGCTTGATGGAAAGCGTGTAAAATTGCAGATTTGGGATACTGCTGGTCAAGAACGTTTCCGGACAATTACAACTGCCTACTATAGAGGTGCTATGGGCATTCTGCTTGTTTATGATGTTACAGACGAGTCATCCTTCAACAACATTAGAAATTGGATCCGCAACATAGAACAACATGCATCTGATAATGTCAACAAGATTTTGGTGGGCAACAAGGTTGATATGGATACAAAGCGGGTGGTGTCCACAGCTCAAGGACAAAAGCTCGCAGATGAGTATGGAATGAAATTTTTTGAGACGAGTGCAAAAACAAATCAGAACGTGGAGCAGGTATTCTTTACCATTGCAAGGGACATAAAGCAAAGATTGACCGAAACTGTTGCTGCAGCAGCTGAGCCCCCAACTATTCAAATCAGTAGGCAAGAACCAGATCAGGCAGCTGCCTCGTCAAGATGGTCAGCCTGCTGTAACACCTGATCAACGCTGCGGCGCACTGCACGGCTTGTCCTGTCGCAGCTTGGCTATGACAGCAAATTTACACTCCCATCTTTCGTGTATTCATTGCAAGATGTATATTTCGCCCAGTTGATATCTAGGGCAAAAAATCTTTTACCTGACCATTCTGGGTGTTGTGATTCCTCAATGAGTGGAAGGGGGGGTTGCCTGTGGTCTAGCCCTGGTGGTAGTTCTGAATTTGTTTCAAACCTTCTTTTTTCCTCTGGGTTGCCGAAAAACGAAGGATTGGGCTGGCCCGGAACAAACTCTCAAAACACAAAAATTAATGTGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAGAAAATAATTTTTTTTTTTATTTTATTAAAAAATAAAAAAAAAACAATTTTTTTTTTTGTTGGTTTTTTTTTTTTAAAACCCATTTTTTTTTATTAAAAAAAAAAATTTTTCCCCCCCCCCAATTTTAAATAAAAAAATAAAATAAAGGTCCAGTTAAAAAAGGCCAAAAAAATCCCGGTAAGTTCAAAAAATAGTTTTTAATCAATATTTTTAACCCCATTTCTTAAACCATTTAATAAATATTAGTTTTTTAAATTTGTAAAAAAAAAACAAAGTTAAAACAAAATTGAAATAAACAAGAAAAAAAAGTTTCCTCAATAAAAAAAAGAATCAATAATAAAAGTTAATTATATTTATAATAATAAAATATTGAATAAAAAAAGAAGAAAAAATAATAATAAAAAGTTCTAAAATAAATGTTTGTATCTCTTGGTGATCGATCGGCGATCTTTAATTTGTGTTTTTTTCTAGTTCTACTTCGAAGTCATCATCGTTACGAATTCTTCGTAGTTGACTTGACCGTCACCATCGATATCAGCCTCGCGGATCATCTCGTCGACCTCCTCGTCGGTGAGCTTCTCGCCCAGATTGGTCATGACGTGACGAAGCTCGGCCGCCGATATGAAGCCGTTGCCGTCCTTGTCGAAGACGCGGAACGCTTCGCGGATCTCCTCTTCCGAGTCCGTGTCCTTCATCTTGCGCGCCATCATCGTCAAGAACTCTGGAAAGTCGATGGTGCCGTTGCCGTCTGCGTCTACCTCGTTTATCATGTCTTGAAGCTCAGCTTCGGTGGGATTTTGTCCGAGCGAGCGCATAACAGTGCCCAACTCTTTCGTCGTTATAGTACCGTCACCGTCTTTATCGAAAAGGCTAAACGCCTCTTTAAACTCTGCTATTTGTTCTTCGGTCAATTGATCGGCCATTTTTTATTTTGTTTTGAGTGTGTATATGTGGTGTATGTGTTTTTTTCGTCAGAAGATCGATTTAAAAATCTAAATCTATATAAATTGCTAGTGACGAATGATTTGGTGAATAATGATAGATCTCGGTCGGTTCGGTCTCTTTCTCTCTACACTCCGGACTCTTTTCTAGATCTCTAACAATTTGTCGTCAAAATTTGCTTACTATTTATATGTATCACTAGTGTATCGAAGTTGTAGTCGTATTTAGTAGTAGTAATAACAAACAAACAAAGGTTATTTTATTTCGTATATTATTAAAAATATTAATTAGTTCACGTCGTCTCGACTGGCCTGAAAGGCCTAC | |||||||||
gi|29630844|gb|CB635853.1|CB635853 OSIIEb16K14.r OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb16K14 3', mRNA sequence TCGAGATGACGTGGACGAATA EST sequence (targeted fragment marked with yellow): GCCTGGTTCATTTGACACAACTGGTGTGGTGGCTGAAAACCATTATGTTGAATTTGGTGCTAGTGGAATTCAGAACCAGGGATTTCAGCATACAACTGAATTATGGGCACATAATCAAGTCGCTCTAAATGTGCGGAACCATATGAAGGACAACCATGTTGTCTTCTCACATTCATCAGATGCTACCATTATTCATACAGTGAATGAGCAACCGCCTAACCGGAGTTCAAATGCTTCACAATCATGGTTCAATGGGGCTCTATCTGCCTTGCTCGATTCTGTTCCTAGCAGTCCAGCTATGGCTGCTGAAAACATAGGTCTTAACAGAACACTGCAACGCATTTCGAGCTTTAGGTCACAACAACCTGCAAGAGAAGAAGTTAGCAGTACTCTTATCAACACCAGAAGAAGAGGCGGTGGGCTAATTTTCATCTCGTTAATGGTTTTACTTGTTGCTATCATGTGGACCTTTAGCAATGGGTCTGCAGTCAAGCTTAGCAAGGGGTTATGGAAGTTTCCCTCTACATAATAGGATGCACCCGGTTATCCTGGTGGCCAATGCTTCTTACTACTTCAAGTACTAATTCTTGTTTTGCTATCCTTTCCTCTATTCCTTTACATTGAAAAAGGCAACAATCTAGGAAAATATTAGAGGATTATGTGGTGTTAGCACTTACTTTCAGAATATTATGCGAGAGATGTTAAAACAAAACAAAATGAGAAAAAGAAATATCTGAGGTGAACTTCTGGATGTTTTTGTCCTCGTCATTTTGATGAAAGTATATATTGAATGTAATTAAAATATAGAAAAAAAAACTCGAGGGGGGGCCCGGTACCCAGCTTTGTC | |||||||||
gi|29634204|gb|CB639213.1|CB639213 OSJNEa08M08.f OSJNEa Oryza sativa Japonica Group cDNA clone OSJNEa08M08 5', mRNA sequence TCGAGATGACGTGGACGAATA EST sequence (targeted fragment marked with yellow): ATGTCAAAAATAATCGCCAAATTCAAATACGAATACTAAATAACAATGATATATTTTAAAATAGGTAAGTTTATAAGGGGAAATATGTAGTGGAAACCAAAAAATACAATACAGTTGGATCGAAAAATGGACGTCCGACATTTATCCACGTCATCACGATTTACTCATGAGTACTTATGATGATGTGAACAAATCTCGTACATTTTATTTTTTATTGTAATTTTAAGTTTCCACGTATTTTTCCCAGTCTATAATGGCACCGTCTCCCTCTCCCCATCGAGGAAGAGTAAACCCAAAAACCCATCTCGCTAGCCGCCGCCGGCCACAACCATTCCTCACGACGGGAGGAAGACCAAAAAAAAAAAAATCCCACTCCGTGTTGGTAAAATCCGACTACCACTTTGGCCTGTCTCAATCCAAGAATTCAAGAATCGAACTCCTTTGGGGTCGCCTCGCTGAATCTTCCTTATATATACGCGCTCTCCCATT | |||||||||
gi|88296566|gb|CI537533.1|CI537533 CI537533 Oryza sativa (japonica cultivar-group) 5 days after pollination pistil Oryza sativa TCGAGATGACGTGGACGAATA EST sequence (targeted fragment marked with yellow): GGGTATTCGTCCACGTCATCTCGAATAAAATTTTTAACCCATGGTTAAATCTGAGAGTTATTCATGAAATTTTTTTTACTGCCACTCTAGGTGACATGGATAAATCTCATACATTCATTTTTATGCTAATATTAGTTTCTAAGTTGTCACTGTATATGTGGTTTGCACTTTATATTTTTCCCCATCTAACAAGTCCCGTAGAACCAAATTCAGCAGAGGTCGTTAAGCGTGATGACCACCGAGCAGTGACACTTGCGCTATGCTGTTGGTCTTGCCTTTCCCCTTGATACCTAGTACCACTTGCTTAAGACCATTCCCACCTTGAGTTTAAACGATTTCTAGTCGCTGGATGGAGCGAATCCTTTCCCAGGCAGCGCCAGTC | |||||||||
gi|86848676|gb|CI293974.1|CI293974 CI293974 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c TCGAGATGACGTGGACGAATA EST sequence (targeted fragment marked with yellow): ATTTTTGACGAGACACCAGGCGAAAAAGCTCGAAGAACACTAAGCGCCCTACGCCAGTCTCCCCACCCCCAGCATCGACCATGGGGTTCAGCGACAGCCGCGTGAACTGGCCGCTTTTCTTTGGCTGCATTCTCATTGCCTTCGGTCCGCTCGCGACGCTCTTCTTCCTCGTCGTCTCGAAGCGCGCGCAGCTGCTCATCATCTCTCTCTTCGGTGCATTCATCTGGCTCGTCTCGATCCTGCTCACGGCCACATTCTGGCGCGTGATCCCGCCGCTCAAGGACTCGATCGAAGCCACGATCCCGCTCGGCGTCGTGCTCCAGGAGGCCTCGCGCTTTGTCTTCTTCCACTTTTACGTGCGCACCGAGGGCGCCGTCCAAAAGGTCACGACGGCGAC | |||||||||
gi|29659139|gb|CB655414.1|CB655414 OSJNEc08N04.r OSJNEc Oryza sativa Japonica Group cDNA clone OSJNEc08N04 3', mRNA sequence TCGAGATGACGTGGACGAATA EST sequence (targeted fragment marked with yellow): AGTACGGCCTGAACGGTCCCGGGAAGCACCTCGGCGTGGTCGGCCTCGGCGGGCTGGGCCACCTGGGTGTCAAGTTCGGCAAGGCGTTCGGGATGAAGGTGACGGTGATCAGCTCGTCGCCGGCGAAGCGGGGGGAGGCGCTGGGGCGGCTCGGCGCCGACGCGTTCCTGTCGAGCCGCGACGGCGAGGGAATGGCGGCGGCGGCGGCGACGATGGACGGGATCATCGACACGGTGTCCGCGGGGCACCCGCTGGTGCCGCTGCTGTCGCTGCTGAAGCCCAAGGGGCAGATGGTGGTGGTGGGCGCGCCGGCGATGCCGCTGCAGCTGCCCGCGTACGCCATCATCGAGGGCGGGAAGCGCGTCGCCGGGAACGGCGTGGGCAGCGTGGCCGAGTGCCAGGCGATGCTGGACTTCGCCGGCGAGCACGGCATCGCCGCGGACGTCGAGGTGGTCGCCATGGACGCCGTCAACGCCGCCCTCGGCCGCCTCGAGAGGAACGACGTGAGGTACCGCTTCGTCGTCGACGTCGCCGGCACAATGCACGCTGCCGCCGCCGCCGCTGCGTCGTCCTAGGCTCCTAGCTATGTAGCCTTCGTGTCAACGTGCTTGCGTGTCATTGTGTGTAACCGTGCAAGGAGAGGCGTTTGGTGTGCGCCGTTTTGGGGAAAATATGGGGGTGGAAACCACGTACACGATGGAAACTTGAAAACTACCGTTAGATTAAATAATAGACGCTTGAGATTTGTTCACGTCATCACGAGTAAAAATT | |||||||||
gi|88381403|gb|CI528383.1|CI528383 CI528383 Oryza sativa (japonica cultivar-group) 5 days after pollination pistil Oryza sativa TCGAGATGACGTGGACGAATA EST sequence (targeted fragment marked with yellow): GGTATTCGTCCACGTCATCTCGAATAAAATTTTTAACCCATGGTTAAATCTGAGAGTTATTCATGAAATTTTTTTTACTGCCACTCTAGGTGACATGGATAAATCTCATACATTCATTTTTATGCTAATATTAGTTTCTAAGTTGTCACTGTATATGTGGTTTGCACTTTATATTTTTCCCCATCTAACAAGTCCCGTAGAACCAAATTCAGCAGAGGTCGTTAAGCGTGATGACCACCGAGCAGTGACACTTGCGCTATGCTGTTGGTCTTGCCTTTCCCCTTGATACCTAGTACCACTTGCTTAAGACCATTCCCACCTTGAGTTTAAACGATTTCTAGTCGCTGGATGGAGCGAATCCTTTCCCAGGCAGCGCCAGTCCTGCCTTGTAGCTTCTTCATAAGAAGAGGATG | |||||||||