| mature miRNA: TCGAGCTTGGTCAAGCTCGA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|117211764|gb|CT851744.1|CT851744 CT851744 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TCGAGCTTGGTCAAGCTCGA EST sequence (targeted fragment marked with yellow): GCCCACGCCTCCATCAGATCTCCGCGAGCTTCGACCGCCACCGCGACCGCCGCAGCAGCAAGCAGCGTCATCCCCCGCACGACGCCAGGCATGGCGGCCTTCACCAAGCTCGAGGACTCCCCCATGTTTCGCAAGCAGGTCAATTCTATGGAACAGCTAAGCGATGAACTGAAACAACGGTGTTCGAATCTTCATAAAGGATGCAAAAGATTCATGGGATCACTTGATGAAGGATACGCGGGAGATCTAACATTTGCCGATGCTCTTGAAGCATTTGGTGCTGGTCAAGATGATCCTGTTAGTGTTGCCATTGGAGGGCCTGTAATGTCCAAGTTCACTACGGCTTTTAGGGAGCTTGGAACATACAAGGAACTCCTTCGTTCTCAGGTTGATCATATGCTTAGTGAACGTTTGATGCAATTCATTGATGTGGATTTGCATGGCGTGAAGGATTGTCGTCAGCGTTTGGATAGGGCTACAGTGGGGTATGATCAGGCACGTGAAAAATTTGTATCAGTACGAAAAGGGACTAGAGCAGAAGTAGTGACAGGACTTGAGGAGGATCTGCACAATGCCAAGTCAGCTTTCGAACGATGCCGCTTTAACCTAGTGCACGCACTTTCAAATATTGAAGCAAAGAAGAAGTATGAGTTCTTGGAATCAATAAGTGCAGTGATGGATGCCCATTTGAGATATTTCAAGCAGGGATATGAACTACTGAGTCAAATGGAACCATTCATTCACCAGGTTCTAACATATGCACAGCAATCAAAAGAAATGGCTATCAATGAACAAGATAAACTTGCAAAGAGAATTCAAGAATATAGGACTCAAGAGGAAATCGCGAACTTGAGAATGGCTAGTAATGTGGACACATCTACCAGTGGTGATGGTATCCATGGTGTTGGTCTTCATCCTATAAAAGATGGAGCCCTATGCAGTCAACTGCAATGGCGAGGTCAATAATCAAACAAGGTATCTCTTTAACCGTCTGAAAATCACAAAATGGAAAAAAGGGTCTTTGTTCCGAACGTCACGGGACTCTTTTCACTACCGGAATAAAGGAAAATCCCAAGGACGGGTTCCACACAAAAAACGGGGGAAAGGGGAGGGGGGGTTTTTAACCCTTTTCAAAATTTTAAACCAAAAAGGCTCCCAACTCGGGGGGACAAAAGACCTTTTTGGGCCCCAAAAAATTATTTTTAAAAAAATTTCAAAAATAAAAAAAATGGGTGAAAAAAAAAAAAAAAAAAACAAAAAAAATTTTTTTTTTCTTATAAAAAAA | |||||||||
gi|88234990|gb|CI236192.1|CI236192 CI236192 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft TCGAGCTTGGTCAAGCTCGA EST sequence (targeted fragment marked with yellow): TCTCTTGTTCACATAAGTTAGATTCTTTTTTTTTCTTTTTGAGAAAAGAAGATAGATGGTTACACTTGCTGAGCAACTTAAATCCTCAGCCCCCTGAACGAAGCAGCAGATTTCCCAAGCAAGCAAATGAAATGCAACCATGCGCTGGCTTGGAATAGCTCGATCAGTACCCAACCCCAACTCAATGAGCTGGACCCAGCTCGATCAAGGCGTGAAGCTCATCTCGAACTCATCATCGCCAACCATCATGAAATGCGACCCGTGATCAATCACCTTCTTGCCGTCCTCCGTCGCTCTGCTGAAGTGCTTGCATGGGCTCACCTCGAACTCCACATGGACAGTCTGCATCGACTTGAGGTGCAGGCTCTGGAAGCCGATCAGCTGGCTCGCCGGCCTGCCGCCGTCCGCCGCGCCGTTCGGCCAGCGCAGGAAGAGCAGCACGGGGTGCCTGCCGTCCATGGGGCCATGGTTCTGCACCCTGACGAGCGCCGGGAACTTGAGCTTGTCACACGTCTCGGGGCCAATCTCTTCGACGTCATAGCTCACCGTG | |||||||||
gi|88457865|gb|CI542047.1|CI542047 CI542047 Oryza sativa (japonica cultivar-group) 2 weeks seedlings root of seedling UVB irradi TCGAGCTTGGTCAAGCTCGA EST sequence (targeted fragment marked with yellow): AATCATGAAAATATGTAGATGCTCGTATTGAAGTACATCATCAGTCACGAAGAACAAAACCTGAACAACCACGCTACAACACTGAAAACCTGAATTACAGTACAACATGGAGAAGTCACAGTCACTGTACAACATGTCTGCAGCTGATGATCGAGTCTGACCAAGCTCAATCTAACAATGCAGCGAATTGCATGATGCCGCAGAGTGTGATGCATCGTCAGCTCACGCCCACTTGGCCATGACGGACATGCCGCCGGCGCCGAGGAGGACGGGGAGGAAGGGGGCGAGCTGGAGGCGGANGTTGCCCTGCAGCTTGGGCCCCATGAAGTCGGCGGCGAGGAGCCTCCACAACCGCCATGTACTGGANCANCCCCGCGGAGGCGGCGTCGAGGAGGCCG | |||||||||
gi|86518213|gb|CI158419.1|CI158419 CI158419 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft TCGAGCTTGGTCAAGCTCGA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTGCGAGAACTAGATAGTAAAATTAATAACCTAAGGAACATGAATATGAGATTAGAATGCATAAAGTAGCAAATAGGTTCATCAATTTTTTTTATCTCACATCACAGAGCTGGAGGATTGCCAAACCTCCTCCTGAGTGCTGACATGACGCTCCTCATCCTACTACTTGCCTGGGCAGATGATTGTGCATTGCTGGCGTTAGTCGGGAGATCCATGGCTGCCATCTGATCAGTAAGCTCTGTAATTTGCACCTGTCCAGCCTCTTGCCCGCCATTTTCAATTGCACCTCCAGCATCACGCTCCAATACAATATCCAAGCTGATAGAGAATGAGCCACCCCTAACCACCTTCAGGTTCTCAATACATTCATACGATACGCCCCGGCATCTCTTCAATTTCAGCTTGACCAAGCTGGGGCAGCCCCCATTCAG | |||||||||
gi|86540550|gb|CI180756.1|CI180756 CI180756 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo TCGAGCTTGGTCAAGCTCGA EST sequence (targeted fragment marked with yellow): CTTTTTTTTTTATTTAGATTCAACTTTTTTTTTTGAAACTAAACCGGCAGGAGAACTGCCAATTATATTTTCAATAAGCAGGAGTAAAAACCCTAGACGGGTTACAAGAAAAGAAAAAACAACTACCGGCTGGCTGAATAGCTGCACCGCACACGCCACAACTCACTAACAACAGAAACCACTGACGGAGCCCAACATAGAACGTCGTTACCAAGCTTGACCAAGCACGGCAAAGGGGTTCCGACCTTGCAACCGTGTCATTGTTGCCGAGCTTGCCGCCTAGCGACACAGCAGCTCCGACTTCAAATCGGTTGCATCATCCATACCTAACTCGCTGTCAATGGTCAAGTGGCTTCAACTTCCCACGAAGAACTTCAGCCAAAGCCGTCTAAACGCCACATCCTATTCACGGCCAACAAACAAAACCCCTAGAAAGAGAATGCAACGTGTCATCGTTGCCCAGCTTCGTCACCCTACGAAGCAGCTCCGACTTCACCTAGCAAACACAAGCAAGGAGCGAAGATTGCCCGCCG | |||||||||
gi|89174593|gb|CI110791.1|CI110791 CI110791 Oryza sativa (japonica cultivar-group) Panicles two weeks after flowering Oryza sati TCGAGCTTGGTCAAGCTCGA EST sequence (targeted fragment marked with yellow): GATGCTGCAAAGAGTGTATTACGAGAGCCAAAGTGTGTGCAGGAAGGAAAGACAGTCTAGAGCTCAAGGTCGACCGAGCTCGAGGCGCCGTCCCCCTGCGCCGAGACCGAGAGCTTGCCCGGTGCAGCGGCCTCGAGGGTGAGCAGGACGGACTTTGCGCCCTTGGCGGGCGTGGGCACGGTGAAGGCAGCAAGGCCCTTGCCTGCCGGCTTGGTGATGGCGGTCTTGCGCGTCTCGGGCTCGAGCGGCTCGTCGTCGTCCTCGTCAATGTCCTCTGGGTCCGGCTGGATGGTCTCGACCTTGACGTCGTCGATGCCCTGGTCGAGCGTCACAGCCACCGACTCGGCGCCCTTGGCGACGGGCAGGCGGAAGGAGCGGCGCAGCGGGTATGCAGTGTTGCTGGGCACGAGCGTGACGAATGCGCC | |||||||||
gi|88412812|gb|CI576076.1|CI576076 CI576076 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone TCGAGCTTGGTCAAGCTCGA EST sequence (targeted fragment marked with yellow): AGATCTCCGCGAGCTTCGACCGCCACCGCGACCGCCGCCGCAGCAAGCAGCGTCATCCCCCGCGCGACGCCAGGCATGGCGGCCTTCACCAAGCTCGAGGACTCCCCCATGTTCCGCAAGCAGGGTTCGTTGCTTTCGGGCGAGATCTCGCCTCCGGCTCCGCGTCGTTGGTATTTGGATCGTACGTGGTGGGGGATTTAGGGGGGGTGGAGCTGGAGGTTGGGGTGATTGTGGTAGCTTTGGGCTGGGATTTGGGAGGTTGGGCGCATTCTGTGTGGCGAGATCTCGACCTGATTGCATGCTTTATTGGCCGTTGATTGGTTCGGAAATGCGATTGTTCCTGAGTAGAATGGATATCAAATTCCGCTTTGGTTTCGACGAATACCGTAGGTCAATTCTATGGAACAGCTAAGCGATGAACTGAA | |||||||||
gi|86885218|gb|CI316978.1|CI316978 CI316978 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone TCGAGCTTGGTCAAGCTCGA EST sequence (targeted fragment marked with yellow): CAATCGCTTCAACTTGTTTTACACGGCTTCATGGTCAATGAAAAATATTGTGCGACAGCAATGCACATTGCATGACTATGGATTAGCTTGGAGCTTACTGTGCCAGATTAACTTAAATTATGTGCAAGGAAAACAGACGACACCCCCCAAGCCACTAAAACAGAACACTGGAGTACTGGACTGAAGCAGCATCTCTCTTTGATTGCTGACTATCCCCAAAGATTGTACACACATGGGAAATTATATTGTAGCTAGACTCGTTGAAATTCCGTAGAGCACAGGCAATCATTTGTACATTTCGTCTCTTCATTGTGAACCTGATCACAATGCCATTTCAGCTTGCAAGGCTGCAAGCTCATCCTCCTCAGCTGATGCTTTCTGTGGAGCAGGGCGAGTTGGTATCCTGGTGCCTGGGACCTGCACTGGATGCAAAGGTGGAGCTGCACCAGGCTCGAGAAGCTGAGATTCCATTCTGCTCCTCCAGTTCTTCCAGTTCTGCCTTTATTTCGTCCTCATCACA | |||||||||
gi|88729450|gb|CI752960.1|CI752960 CI752960 Oryza sativa (japonica cultivar-group) after pollination embryo Oryza sativa Japonic TCGAGCTTGGTCAAGCTCGA EST sequence (targeted fragment marked with yellow): GAGGCAGGCAGCAACTACCCGACCGATCGCCTCCTCTTCCTCCTCCTTCCCACCTCCCGCCCACGCCTCCAGATCTCCGCGAGCTTCGACCGCCACCGCGACCGCCGCCGCAGCAAGCAGCGTCATCCCCCGCGCGACGCCAGGCATGGCGGCCTTCACCAAGCTCGAGGACTCCCCCATGTTCCGCAAGCAGGTCAATTCTATGGAACAGCTAAGCGATGAACTGAAACAACGGTGTTCAAATCTTCATAAAGGATGCAAAAGATTCATGGGATCACTTGATGAAGGATACGCGGGAGATCTAACATTTGCCGATGCTCTAGAAGCATCTGGTGCTGGTCAAGATGATCCTGTTAGTGTTGCCATTGGAGGGCCTGTAATGT | |||||||||
gi|33801475|gb|CF326610.1|CF326610 JMT1--06-I15.g1 AtJMT-overexpressing transgenic rice lambda phage cDNA library (JMT1) Oryza s TCGAGCTTGGTCAAGCTCGA EST sequence (targeted fragment marked with yellow): GCACGAGGCAACTACCCGACCGATCGCCTCCTCTTCCTCCTCCTTCCCACCTCCCGCCCACGCCTCCAGATCTCCGCGAGCTTCGACCGCCACCGCGACCGCCGCCGCAGCAAGCAGCGTCATCCCCCGCGCGACGCCAGGCATTTTGGCCTTCACCAAGCTCGAGGACTCCCCCATGTTCCGCAAGCAGGTCAATTCTATGGAACAGCTAAGCGATGAACTGAAACAACGGTGTTCAAATCTTCATAAAGGATGCAAAAGATTCATGGGATCACTTGATGAAGGATACGCGGGAGATCTAACATTTGCCGATGCTCTAGAAGCATTTGGTGCTGGTCAAGATGATCCTGTTAGTGTTGCCATTGGAGGGCCTGTAATGTCCAAGTTCACTACTGCTTTTAGGGAGCTTGGAACATACAAGGAACTCCTTCGTTCTCAGGTTGATCATATGCTTAGTGAACGTTTGATGCAATTCATTGATGTGGATTTGCATGGCGTGAAGGATTGTCGTCAGCGTTTGGATAGGGCTACAGTGGGGTATGATCAGGCACGTGAAAAATTTGTAT | |||||||||
gi|44672072|gb|CR285506.1|CR285506 CR285506 Oryza sativa library (Han B) Oryza sativa cDNA clone p706f04p3, mRNA sequence TCGAGCTTGGTCAAGCTCGA EST sequence (targeted fragment marked with yellow): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATATATTATTTTTTTTGCAAAAACCTTGGTGAACTCGATTCCACTGAATCTCCAAACAGCTCCAAGGGTACAACTCAAGCCATCCATGTTACAAGTATCCATAGATCACCAAAAGAAAGAAAAAAGAAGAGAGAAAAAATACATAAAATACTTTACAACCAAGACCCAAATAATAGACCACCGATATNGTACCTAGCCATAATCACACCCTGCATTTGCACATCTTTCAACTCTAACATCCCACGAAATAAATCCAAAGATTTTGACAGGCATTTTCTTTCTAGGAGTAGCTGCCAGAACAAAGCTAAGCTCAGACTGGTATTACATCGATGTTCGATGTATCTTCGCATCTTAAGACTAGCCCATCAAGGCTAGTAGGGAGGATGCACTTGGCCCACTGGCAGCCAGTGGAGATGGGTTCCGATGGAGGAACAATCATCAACACGTTGTCGTTCCTTTGAACAACCCCCATAACACTCACCGTGCTGACCTCCTTAATGTATCCTTCTTTCAGGCGCATTATCCGATCATCACTTGATAGATTCCTTTCACGCAGGCATCTCCAGAACTCGGGCAGAACTGTCCTGCGTATCAGGGATATGTCCATAAACACGGATTCATCANCATAGGGGGTTCCCGGCGCCCCAATCGGGTTGGACCAAGCTCGTGATCGATGGGATCGAGAGTGCATCAACAGTGTTCCGAACACGACACCGACAATGGGGGTCCGATGAGGATTAACCAGCCCATACAGAGGAGGACACGTGACCGAGAGCACATAACTTCACCNATCCTCTGTCCTTGTTCCCCCTCCTCCCACATAACACTCACATCTGTTGATTCATGCGATAGAATGAGAGAAAGGAGACT | |||||||||
gi|86436705|gb|CI118427.1|CI118427 CI118427 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo TCGAGCTTGGTCAAGCTCGA EST sequence (targeted fragment marked with yellow): TTTCCATCCAAACCGATTCTCGGTGCCTCTTTACTCAGCGCATAATTATTCATGAAACTGCTGCAACTCATAAGAGTAACTGCTGTTTTTACAATTAGAACCAGATGGAACAAACAACGGTGCTACCGAAAAACAACTTCAAGCTTTATCGTAAGGCTACATAAGGGACCAAGACATAATCTGGAAGACTACAAGAAAGGTGCAAAAGAAGACGCGGCTGGATTCCAAAAGGATCCCTCGCTTCGTCAGCAAAACGTCAATCAATCAGAAGTGGTAATGGAACAAGTTTCAGTTACCCAGTTTGAGTTAGACTGAGCTCGACAACTGTTTGGGCTCTTCAGCTGTGTGATTAGCTTCCAGCCTTTTGGGACTTCTTCCTTTATCAGGGCCGCCAATAACTCCCCATGTCTCAAACTGTCTCTGCCGTGCCCTTGCCCTTTCCTTCTCCTCCTCGGATTTGGTTGCAAAGCAATATGGACATGATACACCATACTCCCACTCAGGAGATTCCATGTCTTCATCACTAACTGGTTTCTTAC | |||||||||
gi|88508175|gb|CI435681.1|CI435681 CI435681 Oryza sativa (japonica cultivar-group) leaf of seedling 50ppm CuSO4 for 3 days Oryza TCGAGCTTGGTCAAGCTCGA EST sequence (targeted fragment marked with yellow): ATTCATGAAACTGCTGCAACTCATAAGAGTAACTGCTGTTTTTACAATTAGAACCACATGGAACAAACAACGGTGCTACCGAAAAACAACTTCAAGCTTTATCGTAAGGCTACATAAGGGACCAAGACATAATCTGGAAGACTACAAGAAAGGTGCAAAAGAAGACGCGGCTGATACAAAAGGATCCCTCGCTTCGTCAGCAAAACGTCAATCAATCAGAAGTGGTAATGGAACAAGTTTCAGTTACCCAGTTTGAGTTAGACTGAGCTCGACAACTGTTTGGGCTCTTCACCTGTGTGATTAGCTTCCAGCCTTTTTGGACTTCTTCCTTTATCAGGGCCGCCAATAACTCCCCATGTCTCAAANTGTCTCTGCCGTGCCCTTGCCCTTTCCTTCTCCTCCTCGGATTTGGTTGCAAAGCAATATGGACATGATANACCATACTCCCACTCAGGAGATTCCATGTCT | |||||||||
gi|86518517|gb|CI158723.1|CI158723 CI158723 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft TCGAGCTTGGTCAAGCTCGA EST sequence (targeted fragment marked with yellow): CTTGATGCTGCAAAGAGTGTATTACGAGAGCCAAAGTGTGTGCAGTGAAGGAACAGACAGTCTAGAGCTCAAGGTCGACCGAGCTCGAGGCGCCGTCCTCCTGCGCCGAGACCGAGAGCTTGCCCGGTGCAGCGGCCTCGAGGGTGAGCAGGACGGACTTTGCGCCCTTGGCGGGCGTGGGCACGGTGAAGGCAGCAAGGCCCTTGCCTGCCGGCTTGGTGATGGCGGTCTTGCGCGTCTCGGGCTCGAGCGGCTCGTCGTCGTCCTCGTCAATGTCCTCCGGGTCCGGCTGGATGGTCTCGACCTTGACGTCGTCGATGCCCTGGTCGAGCGTCACAGCCACCGACTCGGCGCCCTTGGCGACGGGCAGGCGGAAGGAGCGGCGCAGCGGGTATGCAGTGTTGCTGGGCACGAGCGTGACGAATGCGCCGTCGGCGAGGACAAGGCCGATGGGCGCCGAGGTGGCCTGCACCTTGAGCTCGGCGAGCGAGTCGACGGGAGCCTTGGGCAGCTCGGTGAGGAACGCTGCCTCCTTGGAGCCCTCGGGAGCGGCAGCGATGACTTGCGCCTGGATGGCGCAGCCGCCAGCGATGACCTGGT | |||||||||