| mature miRNA: TCGATAAACCTCTGCATCCA species: Manihot esculenta database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|164395931|gb|DB941587.1|DB941587 DB941587 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_009_K1 TCGATAAACCTCTGCATCCA EST sequence (targeted fragment marked with yellow): TCACAGTGACAATCAGAGAAGAACGACGTATTTTCCTCCATTTTATCACTCGGCTTTGTGCTGTTCTAGGCGGTACATTTGCTTTGACAGGAATGCTAGATAGATGGATGTACAGGTTTATTGAGGCGGTAACAAAACCAAAAACTAGATTCCGATAGAGGTGGAGGCTGTACAAGTAGTACTAACTGGCATGAACATGTCAAGGGAGTTCTGAGCAATGCTTATGAAATTCCAAGTTTTAAATTACAGAAGCTTCTATTTAAAGCATATACTGCTAGTGTCATCTTTAGTAAAGTTCGACTTTCACCTGACCTGAACATTTCATTGTTTAATGGTTTGGTATTACTATATAGCCAATATGAACGTTGTAGCTTTTGGGGTGGATGATGTTTGAAGGTTGTGATGGGTGTTGTACATGAATTAACTTTCTGGGGATACATCATTGATTGATTTTATTTTTTTGACCTTTATAAATTTTGAAGATGGCTATGATAAAGTTCGCAACTTTATTTTGGG | |||||||||
gi|182383554|gb|FF379944.1|FF379944 CASL415TF CASL Manihot esculenta cDNA 5', mRNA sequence TCGATAAACCTCTGCATCCA EST sequence (targeted fragment marked with yellow): GGGCTCTCAGCTAGCTAGTTCTCCTCGCTCATCAGCTCAGAGAAAAATAGCACTCTCATGGCGAGCAAAGAGGAGGTGAACCAACTAGAGCTCTTCGGGTTTTGGGTTAGCCCATATGTGCTCAGAGTAGAGTGGGCACTGAAACTCAAGAGTCTTGATTATGTCTATACAGAACAAGACATCTTTAACAAGAGCTCTTTGCTTCTTCAATTAAATCCTGTCCATAAGAAAGTCCCCGTGCTTGTTCACGACCAAAAAGTAATCGCTGAGTCCCTCGTCATTCTTGAGTACATCGACGAGACATGGAAGCACAAGTACCCATTATTGCCTCAAGATCCTTATGAAAGAGCCCAGGCTCGGTTCTGGGCTAAATTTGCAGAACAGAAGATTTTGGAAGCTGCATGGAATGCCCTGTGCTCCTTGGGTGATGAAAAAGAAAGAGCAATACAATTGACCATTGAAGCGCTGCAACAGATAGAGGGAGAGCTAAAAGGGAAGCAATTCTTTGGAGGAGAACGAATTGGGTATCTGGACATTGCCGCAGGATGGATCTCTTACTGGTTGCCTGTCTGGGAAGAAGTTGGGTCTATGAAGATCGTAGACACCCAGCAATTTCCAGCGATTTCTTCTTGGATGCATAGGTTTATCAATCATCCTGTGATCAAAGACAATTTGCCTCCGCGGGATAAGATGACCGTTTACTTCAACAGTCGCCGTGAAGTACTAACTTCTCAGCCTCAT | |||||||||
gi|119011014|gb|DV449496.1|DV449496 CV01028A1B10.f1 CV01-normalized library Manihot esculenta cDNA clone CV01028A1B10.f1, mRNA s TCGATAAACCTCTGCATCCA EST sequence (targeted fragment marked with yellow): TGGCCAGAAGTGGGGTGATCGTAGACGTGAAATTCTGTTTCCAAGAGGAAATTAACCTCACAGTTCGCAAAATCTCCGTCTTCTTTCCTGGAGACGGCTTCATCGTCTATAATCCTGACGGAGAAGTCATCTTTCGATTTGATTCTTACGGTCCAGATTCCCAGCCTAAGGATGAGCTAGTTCTCATGGACGCTTCTGAAACCGAGTCTTCATCATCGGTGGGAGGGCTTTCTAGGTGAGAGAAAGGTCTGCAATGGTGATCATCAGGAGGCTATATTCTGTGTGTGCAGATCAAGCATCATCGGACGATCCAGCTTGGTGGTGGAGGTTTGTCGAGATCCCCGTGAGGAGTACTGCATAGAGGGTAATTATCCTCAGCGGCGGTGTAAAATTTACAGCGGTGGTGCTTCCTTGGAGAATTCATTAAAGCAAGCGGTGGCAGAGATCAAAAGAAAGGTGGACCCTTCAACTCATATGTTGCTTGGCAAGGATGTGTTTTGGCTGTGTGTTCAGCCAGGGCTTGATGCTGCTTTTGCCATGGGATTAGTGCTTGTTCTTG | |||||||||
gi|164380989|gb|DB935499.1|DB935499 DB935499 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_043_J1 TCGATAAACCTCTGCATCCA EST sequence (targeted fragment marked with yellow): GATCTAATGATCTTCTGGCTGCCGCCGCCGAAGATTTGTATGGCCAGAAGTGGGGTGATCGTAGACGTGAAATTCTGTTTCCAAGAGGAAATTAACCTCACAGTTCGCAAAACCTCCGTCTTCTTTCCTGGAGACGGTTTCATCGTCTATAATCCTGACGGAGAAGTCATCTTTCGATTTGATTCTTACGGTCCAGATTCCCAGCCTAAGGATGAGCTAGTTCTCATGGACGCTTCTGGCAAGTGCCTCCTCTCCATCCTTCGAAAGGTTTGTTTGTTTGTTTAGAAACGAAATCTTTTCGATAGCAAAGCTTGCTGTTGAGTTGTGGTTTTTTTTTGGTTTTTGATGAAAATTAAGCAGAAACCGAGTCTTCATCATCGGTGGGAGGGCTTTCTAGGTGAGAGAAAGGTCTGCAATGGTGATCATCAGGAGGCAATATTCAGTGTGTGTAGATCAAGCATCATCGGACGATCCAGCTTGGTGGTGGAGGTTTGTCGAGATCCCCGTGAGGAGTACTGCATAGAGGGTAATTATCCTCAGCGGCGGTGTAAAATTTACAGCGGTGGTGCTTCCTTGGAGAATTCATTAAAGCAA | |||||||||