| mature miRNA: TCGATAAACCTCTGCATCCAG species: Brassica oleracea database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|308721866|gb|DK559949.1|DK559949 DK559949 full-length kale cDNA library Brassica oleracea var. acephala cDNA clone KALE-117D2 TCGATAAACCTCTGCATCCAG EST sequence (targeted fragment marked with yellow): GGAGCCACAAGGCAAATTCGCATATTATATCTGACTTGAAATGATTAAAATAACGTTACATAAGTTTAGCAATGAGATAATTGCGGAGAATGTCTCAGCTAAGTACAACAATAACAAAGACGTTCCAAGTAAAAATTCAGAGAATAGTCTAATCTCAGTTTTGCCTTCAAGTTTCTAGAAAAGAATCTACACACATGGACTAAGATTCTCCCAGTCTCAATGCGCCTCTTCTTCTTTCTTGGATTACAGTGTTACCAAACCCATCCCAAGCTTATTTACATATAAATCACAACTCTGCAAATAGTTGAACGGTGTGTGTTGTGTCCCCTTTTGTACAACTTCCACCGGAATAAATAGCCACAACATACTCATAAGTAACCAACCACTTTTAACATTTTTGATTTTAAGCGCAAACCGCTTCCACGGCTAGTTTCTTCATCACATTTGGACATGGATCTCCACCAAACATCTCAGGTGCTACGGTTACAGAACACCAATTCTGCCCAACACAAAGTCTGTTGAAAGCATCATAAGAGTGATGAGCGTGACAGCTTCCTTGACGGTAACTACCACAAGTTCCTTCAGGTGTACCGAAGCTAGCAAACTTCACCGTGGTCATCTTCTGTCCAGGCCCACATTGCAAATGCACTTTGGGATGCAGAGGTTTGTTGACTTTTCCAGAAGAATGCAATTGGTAATTCACAAGCGTTGATTGCCATTCATAGATATCTGCACAAACACTGTCCACCTCCCTTCTCACCAACGAGATTT | |||||||||
gi|119427504|gb|DY015621.1|DY015621 48RDOAM_UP_027_A08_13AUG2004_064 O. Alba 48RDOAM Brassica oleracea cDNA 5', mRNA sequence TCGATAAACCTCTGCATCCAG EST sequence (targeted fragment marked with yellow): GACCACTAGGGTTTTTCTTCAACCGCTCCTTCTCATCTCTCTCCCTCTCTCCACTCACGTCGTCGCCTCTCCTTTCTCTCGTAAGCTCAAAAAATGGCTTCCTCCACCGCTCAGATTCACGTCCTCGGCGGAATTGGATTCGCCGCCTCTTCCAAGAGGAATCTCAATGCCAAAGCTAACCTCAAGCCGAGAAGCGCCTTCTTCGGCACCAGGACCGGTCCTTTCTCAGCCCAGACCTCCGCCTTCCTGAAAATGAACAGCCGGAAAGGCTCTAGATACGCCGTAGGTCCGGTCCGCGTGGCGAACGAGAAGGTCGTTGGGATCGATTTGGGAACGACGAACTCCGCCGTAGCTGCCATGGAAGGAGGAAAGCCGACGATTGTGACGAACGCCGAAGGTCAGAGGACGACGCCGTCTGTGGTGGCGTACACGAAGAGCGGTGACAGGCTCGTGGGGCAGATTGCGAAGAGGCAGGCGGTTGTTAATCCGGAGAACACGTTCTTCTCGGTGAAGAGGTTTATCGGTAGGAGGATGAACGAGGTTGATGAGGAGGGCTAAGCAGGTGT | |||||||||
gi|308702502|gb|DK510594.1|DK510594 DK510594 full-length kale cDNA library (flowers) Brassica oleracea var. acephala cDNA clone TCGATAAACCTCTGCATCCAG EST sequence (targeted fragment marked with yellow): AATGTGTATTTTGTTTTTATCTGCTTCTCCTATATCTCCTCCTTCCTTTACATAGGGTTTTCTCTCCAATCTCCTTTCCTCTCTTACTTCCTCCATTCTCGGAAAATGGCTTCATCCGCCGCCCAGATTCACGTCCTCGGCGGAATCGGATTCGCCACCACATCCTCCAAGAGAAACCTCAACGCTAAACCCAGCTCAATCCCCAGAAGCGCCTTCTTCGGCACCAGAACCGGTCCCTTGTCCACCCCCACCTCCACCTTCCTCAGAATAAACACTAGAAACTCCCCCGGCGGCTCCAGATACGCTGCAGGTCCGGTGCGTGTAGTTAACGAGAAGGTCGTCGGAATCGATTTAGGCACGACTAACTCGGCCGTAGCTGCCATGGAAGGAGGCAAGCCGACGATCGTAACCAACGCCGAAGGCCAGAGGACGACTCCCTCCGTGGTGGCCTACACGAAGAGCGGCGACCGCCTCGTCGGGCAGATCGCGAAGAGGCAGGCGGTGGTTAACCCCGAGAACACGTTCTTCTCGGTGAAGAGGTTTATCGGGAGGAGGATGAACGAGGTCGACGAGGAGGCGAAGCAGGTTTCGTATAGAGTTGTGAAGGATGAGAATGGGAATGTTAAGCTTGAGTGTCCTGCTATTCGTAAACAGTTCGCTGCGGAGGAGATTTCGGCTCAGGTTTTGAGGAAGCTTGTGGATGATGCGTCGAGGTTCTTGAACGAGAAGGTTACCAAGGCTGTTGTTACTGTGCCTGCTTACTTTAATGACTCTCAGAGGAC | |||||||||
gi|308659434|gb|DK509114.1|DK509114 DK509114 full-length kale cDNA library (leaves) Brassica oleracea var. acephala cDNA clone K TCGATAAACCTCTGCATCCAG EST sequence (targeted fragment marked with yellow): GGGGGTTTTTCTTCAACCGCTCCTTCTCATCTCTCTCCCTCTCTCCACTCACGTCGTCGCCTCTCCTTTCTCTCGTAAGCTCAAAAAATGGCTTCCTCCACCGCTCAGATTCACGTCCTCGGCGGAATTGGATTCGCCGCCTCTTCCAAGAGGAATCTCAATGCCAAAGCTAACCTCAAGCCGAGAAGCGCCTTCTTCGGCACCAGGACCGGTCCTTTCTCAGCCCAGACCTCCGCCTTCCTGAAAATGAACAGCCGGAAAGGCTCTAGATACGCCGTAGGTCCGGTCCGCGTGGCGAACGAGAAGGTCGTTGGGATCGATTTGGGAACGACGAACTCCGCCGTAGCTGCCATGGAAGGAGGAAAGCCGACGATTGTGACGAACGCCGAAGGTCAGAGGACGACGCCGTCTGTGGTGGCGTACACGAAGAGCGGTGACAGGCTCGTGGGGCAGATTGCGAAGAGGCAGGCGGTTGTTAATCCGGAGAACACGTTCTTCTCGGTGAAGAGGTTTATCGGTAGGAGGATGAACGAGGTTGATGAGGAGGCTAAGCAGGTGTCTTACAGAGTTGTGAAGGATGATAACGGCAACGTTAAGCTCGAGTGTCCAGCGATTGGGAAACAGTTTGCTGCTGAGGAGATTTCAGCTCAGGTTTTGAGGAAGCTTGTGGATGACGCTTCGAGGTTCTTGAATGAGAAGTCACTAAGGCTGTTGTTACTGTGCCTGCTTACTTCAATGACTCGCAGAGGACAGCTACCAAAGATGCTGGTCGCATTGCTGGGTTGGAAGTTCTTCGTATTATCAATGAACCCACG | |||||||||