miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TCGATAAACCTCTGCATCCAG
species: Brassica oleracea
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|308721866|gb|DK559949.1|DK559949 DK559949 full-length kale cDNA library Brassica oleracea var. acephala cDNA clone KALE-117D2

TCGATAAACCTCTGCATCCAG
||.|.|||||||||||||| .
AGTTGTTTGGAGACGTAGGGT

EST sequence (targeted fragment marked with yellow):
GGAGCCACAAGGCAAATTCGCATATTATATCTGACTTGAAATGATTAAAATAACGTTACATAAGTTTAGCAATGAGATAATTGCGGAGAATGTCTCAGCTAAGTACAACAATAACAAAGACGTTCCAAGTAAAAATTCAGAGAATAGTCTAATCTCAGTTTTGCCTTCAAGTTTCTAGAAAAGAATCTACACACATGGACTAAGATTCTCCCAGTCTCAATGCGCCTCTTCTTCTTTCTTGGATTACAGTGTTACCAAACCCATCCCAAGCTTATTTACATATAAATCACAACTCTGCAAATAGTTGAACGGTGTGTGTTGTGTCCCCTTTTGTACAACTTCCACCGGAATAAATAGCCACAACATACTCATAAGTAACCAACCACTTTTAACATTTTTGATTTTAAGCGCAAACCGCTTCCACGGCTAGTTTCTTCATCACATTTGGACATGGATCTCCACCAAACATCTCAGGTGCTACGGTTACAGAACACCAATTCTGCCCAACACAAAGTCTGTTGAAAGCATCATAAGAGTGATGAGCGTGACAGCTTCCTTGACGGTAACTACCACAAGTTCCTTCAGGTGTACCGAAGCTAGCAAACTTCACCGTGGTCATCTTCTGTCCAGGCCCACATTGCAAATGCACTTTGGGATGCAGAGGTTTGTTGACTTTTCCAGAAGAATGCAATTGGTAATTCACAAGCGTTGATTGCCATTCATAGATATCTGCACAAACACTGTCCACCTCCCTTCTCACCAACGAGATTT



gi|119427504|gb|DY015621.1|DY015621 48RDOAM_UP_027_A08_13AUG2004_064 O. Alba 48RDOAM Brassica oleracea cDNA 5', mRNA sequence

TCGATAAACCTCTGCATCCAG
.|||||||||||| ||.| ||
GGCTATTTGGAGAAGTGGCTC

EST sequence (targeted fragment marked with yellow):
GACCACTAGGGTTTTTCTTCAACCGCTCCTTCTCATCTCTCTCCCTCTCTCCACTCACGTCGTCGCCTCTCCTTTCTCTCGTAAGCTCAAAAAATGGCTTCCTCCACCGCTCAGATTCACGTCCTCGGCGGAATTGGATTCGCCGCCTCTTCCAAGAGGAATCTCAATGCCAAAGCTAACCTCAAGCCGAGAAGCGCCTTCTTCGGCACCAGGACCGGTCCTTTCTCAGCCCAGACCTCCGCCTTCCTGAAAATGAACAGCCGGAAAGGCTCTAGATACGCCGTAGGTCCGGTCCGCGTGGCGAACGAGAAGGTCGTTGGGATCGATTTGGGAACGACGAACTCCGCCGTAGCTGCCATGGAAGGAGGAAAGCCGACGATTGTGACGAACGCCGAAGGTCAGAGGACGACGCCGTCTGTGGTGGCGTACACGAAGAGCGGTGACAGGCTCGTGGGGCAGATTGCGAAGAGGCAGGCGGTTGTTAATCCGGAGAACACGTTCTTCTCGGTGAAGAGGTTTATCGGTAGGAGGATGAACGAGGTTGATGAGGAGGGCTAAGCAGGTGT



gi|308702502|gb|DK510594.1|DK510594 DK510594 full-length kale cDNA library (flowers) Brassica oleracea var. acephala cDNA clone

TCGATAAACCTCTGCATCCAG
.|||||||||||| ||.| ||
GGCTATTTGGAGAAGTGGCTC

EST sequence (targeted fragment marked with yellow):
AATGTGTATTTTGTTTTTATCTGCTTCTCCTATATCTCCTCCTTCCTTTACATAGGGTTTTCTCTCCAATCTCCTTTCCTCTCTTACTTCCTCCATTCTCGGAAAATGGCTTCATCCGCCGCCCAGATTCACGTCCTCGGCGGAATCGGATTCGCCACCACATCCTCCAAGAGAAACCTCAACGCTAAACCCAGCTCAATCCCCAGAAGCGCCTTCTTCGGCACCAGAACCGGTCCCTTGTCCACCCCCACCTCCACCTTCCTCAGAATAAACACTAGAAACTCCCCCGGCGGCTCCAGATACGCTGCAGGTCCGGTGCGTGTAGTTAACGAGAAGGTCGTCGGAATCGATTTAGGCACGACTAACTCGGCCGTAGCTGCCATGGAAGGAGGCAAGCCGACGATCGTAACCAACGCCGAAGGCCAGAGGACGACTCCCTCCGTGGTGGCCTACACGAAGAGCGGCGACCGCCTCGTCGGGCAGATCGCGAAGAGGCAGGCGGTGGTTAACCCCGAGAACACGTTCTTCTCGGTGAAGAGGTTTATCGGGAGGAGGATGAACGAGGTCGACGAGGAGGCGAAGCAGGTTTCGTATAGAGTTGTGAAGGATGAGAATGGGAATGTTAAGCTTGAGTGTCCTGCTATTCGTAAACAGTTCGCTGCGGAGGAGATTTCGGCTCAGGTTTTGAGGAAGCTTGTGGATGATGCGTCGAGGTTCTTGAACGAGAAGGTTACCAAGGCTGTTGTTACTGTGCCTGCTTACTTTAATGACTCTCAGAGGAC



gi|308659434|gb|DK509114.1|DK509114 DK509114 full-length kale cDNA library (leaves) Brassica oleracea var. acephala cDNA clone K

TCGATAAACCTCTGCATCCAG
.|||||||||||| ||.| ||
GGCTATTTGGAGAAGTGGCTC

EST sequence (targeted fragment marked with yellow):
GGGGGTTTTTCTTCAACCGCTCCTTCTCATCTCTCTCCCTCTCTCCACTCACGTCGTCGCCTCTCCTTTCTCTCGTAAGCTCAAAAAATGGCTTCCTCCACCGCTCAGATTCACGTCCTCGGCGGAATTGGATTCGCCGCCTCTTCCAAGAGGAATCTCAATGCCAAAGCTAACCTCAAGCCGAGAAGCGCCTTCTTCGGCACCAGGACCGGTCCTTTCTCAGCCCAGACCTCCGCCTTCCTGAAAATGAACAGCCGGAAAGGCTCTAGATACGCCGTAGGTCCGGTCCGCGTGGCGAACGAGAAGGTCGTTGGGATCGATTTGGGAACGACGAACTCCGCCGTAGCTGCCATGGAAGGAGGAAAGCCGACGATTGTGACGAACGCCGAAGGTCAGAGGACGACGCCGTCTGTGGTGGCGTACACGAAGAGCGGTGACAGGCTCGTGGGGCAGATTGCGAAGAGGCAGGCGGTTGTTAATCCGGAGAACACGTTCTTCTCGGTGAAGAGGTTTATCGGTAGGAGGATGAACGAGGTTGATGAGGAGGCTAAGCAGGTGTCTTACAGAGTTGTGAAGGATGATAACGGCAACGTTAAGCTCGAGTGTCCAGCGATTGGGAAACAGTTTGCTGCTGAGGAGATTTCAGCTCAGGTTTTGAGGAAGCTTGTGGATGACGCTTCGAGGTTCTTGAATGAGAAGTCACTAAGGCTGTTGTTACTGTGCCTGCTTACTTCAATGACTCGCAGAGGACAGCTACCAAAGATGCTGGTCGCATTGCTGGGTTGGAAGTTCTTCGTATTATCAATGAACCCACG