| mature miRNA: TCGATAAACCTCTGCATCCAG species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|164275179|gb|ES844062.1|ES844062 UFL_106_73 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TCGATAAACCTCTGCATCCAG EST sequence (targeted fragment marked with yellow): GCTGATTCCTTTGCCAGGCGAGCAGAGATGTATTACAAGAAACGGCCAGAGTTAATGAAATTGGTTGAAGAGTTTTATCGAGCATACCGTGCATTGGCTGAAAGATATGATCATGCAACTGGGGTGCTTCGTCAGGCTCATCGGACCATGGCTGAAGTATTTCCGAACCAAGTTCCCATGGTGTTTGCAGATGACTCGCCGGGAGGTTTTGCTCCAGAGGTTGATCCCTGTACACCTGAGATGACGCCACTTGTACGAGCATATTTGGAGCCTGATGAGCTGCAGAAGGATGCTGTGGGGATCTCTTCGCATGCTATCAAGAGGAATGTAGCATTCTCAGAAGAATCTGAATCTCCAATGAGCAGAAAGGGTCTGAAACATTTCAATGATGTATTAGGTTCCGAAGAATCTACAAATCATGTCAAGTGTGCGGAAGGAAGGGCTAGAAAAATTCTCAACTTTCATGATGTAGAGAAGAAAGAAAGAAGTCTGCAAGACGATGATGGTTCTGATCTCAGGGTTCGAGTCCCATCTGAGTCTGAACGTGTAAGTAAAGCTGAGATGGAGATTTTAACCTTGAAGAATGCTCTTGCGAGATTAGAAGCTGAAAAAGAAGCAGGCCTACTTTAATACCACCAAACCTTGAATAGATTAACAAACCTAAAAAAGAAAATCTCCCCTGCCCAAGAGGAATTCCCAGGGATTAAATTGAACGAACCAAGTCAAGCTTAAAACTGAAA | |||||||||
gi|109864996|gb|DW493972.1|DW493972 GH_RMIRS_099_G09_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq TCGATAAACCTCTGCATCCAG EST sequence (targeted fragment marked with yellow): ATCAGGCAGAGGACGAGACAAATGGGGGAAAAATAGTGATTAAATATTTGCAACTTTTATTTGAAAAATAATCAGTAACCAGGTAGGGTCGACAACTGGGAAACGATAACGTAGCCCCTTCCGCTTCACTGCAGCCACCAAACATTACGCCATTAATAGTGAACACTCTAAAAGGTAATATATACAGAAGTAATGGAAAATAAAAATTTACTCATTATATCAAGATCTATAGTTTAAAAAAAAAGAATTTCTGCAACCAAAAAACAGATTTTGTTAATAACTAACATAAAACTTCATGGGAGAGTTAAGGCGCTGGATGCAGAGGTTTATCGATCGATTCATGTATTTGTGTTATTCTCACAACAAAATTCTCAGGAAGAGATCGATGAACCGCTGCCTCAATAATAACGCTAAAAATTTTCCATGCTCTCATAAAAAAAATAAAGAATCGACAGAAAGAAAATACAAATCTAACAGATCTAAACTAATTAAGAGAAAATAAAAACTTCGCAATGTATTATACGAATAAAAGAACTGCAAAAAAAGAAACAATTCCAAGAAAAAAACAAATCTAATTGTAGTCTCGCCATTGCCGTACT | |||||||||