| mature miRNA: TCGATAAACCTCTGCATCCAG species: Manihot esculenta database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|182383554|gb|FF379944.1|FF379944 CASL415TF CASL Manihot esculenta cDNA 5', mRNA sequence TCGATAAACCTCTGCATCCAG EST sequence (targeted fragment marked with yellow): GGGCTCTCAGCTAGCTAGTTCTCCTCGCTCATCAGCTCAGAGAAAAATAGCACTCTCATGGCGAGCAAAGAGGAGGTGAACCAACTAGAGCTCTTCGGGTTTTGGGTTAGCCCATATGTGCTCAGAGTAGAGTGGGCACTGAAACTCAAGAGTCTTGATTATGTCTATACAGAACAAGACATCTTTAACAAGAGCTCTTTGCTTCTTCAATTAAATCCTGTCCATAAGAAAGTCCCCGTGCTTGTTCACGACCAAAAAGTAATCGCTGAGTCCCTCGTCATTCTTGAGTACATCGACGAGACATGGAAGCACAAGTACCCATTATTGCCTCAAGATCCTTATGAAAGAGCCCAGGCTCGGTTCTGGGCTAAATTTGCAGAACAGAAGATTTTGGAAGCTGCATGGAATGCCCTGTGCTCCTTGGGTGATGAAAAAGAAAGAGCAATACAATTGACCATTGAAGCGCTGCAACAGATAGAGGGAGAGCTAAAAGGGAAGCAATTCTTTGGAGGAGAACGAATTGGGTATCTGGACATTGCCGCAGGATGGATCTCTTACTGGTTGCCTGTCTGGGAAGAAGTTGGGTCTATGAAGATCGTAGACACCCAGCAATTTCCAGCGATTTCTTCTTGGATGCATAGGTTTATCAATCATCCTGTGATCAAAGACAATTTGCCTCCGCGGGATAAGATGACCGTTTACTTCAACAGTCGCCGTGAAGTACTAACTTCTCAGCCTCAT | |||||||||
gi|164395931|gb|DB941587.1|DB941587 DB941587 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_009_K1 TCGATAAACCTCTGCATCCAG EST sequence (targeted fragment marked with yellow): TCACAGTGACAATCAGAGAAGAACGACGTATTTTCCTCCATTTTATCACTCGGCTTTGTGCTGTTCTAGGCGGTACATTTGCTTTGACAGGAATGCTAGATAGATGGATGTACAGGTTTATTGAGGCGGTAACAAAACCAAAAACTAGATTCCGATAGAGGTGGAGGCTGTACAAGTAGTACTAACTGGCATGAACATGTCAAGGGAGTTCTGAGCAATGCTTATGAAATTCCAAGTTTTAAATTACAGAAGCTTCTATTTAAAGCATATACTGCTAGTGTCATCTTTAGTAAAGTTCGACTTTCACCTGACCTGAACATTTCATTGTTTAATGGTTTGGTATTACTATATAGCCAATATGAACGTTGTAGCTTTTGGGGTGGATGATGTTTGAAGGTTGTGATGGGTGTTGTACATGAATTAACTTTCTGGGGATACATCATTGATTGATTTTATTTTTTTGACCTTTATAAATTTTGAAGATGGCTATGATAAAGTTCGCAACTTTATTTTGGG | |||||||||