| mature miRNA: TCGATTGGTGCAGATCGGGAA species: Picea glauca database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|225919687|gb|GO371374.1|GO371374 GQ04104.SP6.r_O03 GQ041 - Shoot tip - Dormant (Normalized) Picea glauca cDNA clone GQ04104_O TCGATTGGTGCAGATCGGGAA EST sequence (targeted fragment marked with yellow): GGTTCAGGGATTGGTAGCAAGTTCCCCATTTTCAATCGGCACCAATTGACTTTGACTCGCTTCATTCAACTAAAAAAAGTAGAAGAAGGTCCAGAAAAGCCACCACCTCCAGTGCTTGTTCTCCATGGCCGTTATGGAGGCTGTGTTGGGGACCTTCCCAGCTATGATGCTTTCACACTAGGTGGCCCCTACTCTGTTAGAGGATATAACATGGGTGAACTGGGGGCATGCAGAAACATTTTGGAGCTTGCAGGAGAAATACGGTTGCCTGTAAAAAATACCCATACATATGCATTTGTTGAATATGGAACGGACTTGGGTAGCTCAAAAGATGTGAAAGGAAATCCAACAGAGTTCTTTCGCAGAGTTGGTCATGGTGCTTCTTATGGTCTTGGTGTCAAATTAGGTTTAATGAGAGCAGAGTATGCAGTAGACCATAATGCAGGAACTGGTTCAGTATTGGTTCGCTTCGGGGAAAGATTTTAAGAGTTAGCATGCATCCATGGCATTGAGATCATGGCATTGAGATATTGCTCATAATTACGTTTTCATTTCTATGCACATAAATGGACGTTTTGTTTTGTTCATGAGATATATTTGCTCTTTTTTGAGAGCAGGAGATGTACCTAAGATTGTCACCATCATTACCTTGCATGTCATTTGCAGTTTTGATTGATTGTCACCATCCTTAAAAAA | |||||||||
gi|292518506|gb|GW735994.1|GW735994 WS04912.CR_C21 WS-CBM-34 Picea glauca cDNA clone WS04912_C21 3', mRNA sequence TCGATTGGTGCAGATCGGGAA EST sequence (targeted fragment marked with yellow): GGGGGATTGGTGCAGATCGGGAATCGCCTGCGGAGATAAAGAGCCTGGAGATCAAGAGGACGATTCCCCACCTGCATCAATTGAACGGGGGCCAAAGATGATGTTCTAATTGTTAATTGCAGCGGACTTTTTCGAGGGTTTTATTGCATTCTCAAGGGTTTCGGCCTTTCAGGAAGGTCAGTCTGACGCGTTGGAGACGAGAAAATTATTTTGTTGACAGGGTTCTTAAAGATCTTGACCTGATACCTTCTGGTCTCTATGAAAACTAATCACAATAAGTATTTTTGCTACTTGAAATATTGGAAGATATTTTCTCTGCTGTCTAATAGCTTGTTTAAAAGTACTCAGTCATAATTTGGATTTTCAAAAGCATTGATGGATGATTTAAGAGTTTATGTCATTTTATTCAATTTGTGCAAGTAAAATTAGGATGCTGTTGTTGATAAAAAAAAAAAAAAAA | |||||||||
gi|211868385|gb|CK434356.2|CK434356 GQ0062.TB_H11 GQ006: Cambium and phloem from mature trees Picea glauca cDNA clone GQ0062_H11 TCGATTGGTGCAGATCGGGAA EST sequence (targeted fragment marked with yellow): AGAGAAATTCGGAATAAATGAACTTAAAGGATATGTTCATCGCATCAGTATTCACGATGTGCACCAATCAATAATTATTGTGCAAAATCGAATAACACCACAGGCAAAGAAGGGTGTTAAAGAGATATCAAAGTCATTTTTAATAGAGATATTTGAAGAGACAGACTTGCTTATCAATGTAAAAGAGCACGCGCTTGTACCTGAACATCAAATTCTCACGTTGTCAGAGAAGAATGCGCTTCTAAAACAGTATGGTGTCAAAGAAAATCAGATACGATGGAATAGTGATGATAAGAAAAGAGAAGATGGATGGGTTTGATGTGCAAACCGGATAAAAAATGATTTAGTTTTAGATGAGCAAATCCTTTTAGTATTTATGCTTCTTTCCTTTGGATTTCACCAATGGACACATGGTTCTCAGGCTTCACAAATGCTTGTTAGAATGTATTTGAAAATGCAATTAACCTTCACCTGTTTTACCAAAGTTATGAATGCCAAATAAGGACACGAGTTAGCTTGTGTGAAAATATCTAGTGAAAAGAAGCTTGTTGCAATCTTATTAATGGTCTTATAACTTTATAAATGAAGCATTGAACCCTTTTCAAACCATATTGACGTGTGAAGATTCATTAAAAAGAAAATA | |||||||||
gi|225918711|gb|GO371296.1|GO371296 GQ04104.B7P1_O03 GQ041 - Shoot tip - Dormant (Normalized) Picea glauca cDNA clone GQ04104_O0 TCGATTGGTGCAGATCGGGAA EST sequence (targeted fragment marked with yellow): AGCGGGCTTCAAGCAAATATCACAGAGAATCTTACCCGGCAAAGTAAATTCACTTATGGAGTGGTCATGGAAGAAATCACAACTCGTGATGAAACCAGTACTGTATGCACCAATGGAGCTCGAGCTTTGCCAAGTGGGGCACTGAGTATGGATGGACCTCCTACGACATTGAGTGGTACTGGTATTGATCATATGGCTTTTCTGCAAACAAATATTACACGGGACAACACAAAATTTGTCAATGGAACTCCTATTGGTGATAGGGATGTTTTTCAGCTGGACCAAGGTTCAGGGATTGGTAGCAAGTTCCCCATTTTCAATCGGCACCAATTGACTCTGACTCGCTTCATTCAACTAAAAAAAGTAGAAGAAGGTCCAGAAAAGCCACCACCTCCAGTGCTTGTTCTCCATGGCCGTTATGGAGGCTGTGTTGGGGACCTTCCCAGCTATGATGCTTTCACACTAGGTGGCCCCTACTCTGTTAGAGGATATAACATGGGTGAACTGGGGGCATGCAGAAACATTCTGGAGCTTGCAGGAGAAATACGGTTGCCTGTAAAAAATACCCATACATATGCATTTGTTGAATATGGAACGGACTTGGGTAGCTCAAAAGATGTGAAAGGAAATCCAACAGAGTTCTTTCGCAGAGTTGGTCATGGTGCTTCTTATGGTCTTGGTGTCAAATTAGGTTTAATGAGAGCAGAGTATGCAGTAGACCATAATGCAGGAACTGGTTCAGTATTGGTTCGCTTCGGGGAAAGATTCTAAGAGTTAGCATGCATCCATGGCATTGAGATCATGGCATTGAGATATTGCTCATAATTACGTTTTCATTTCTATGCACATAAATGGACGTTTTGTTTTGTTCATGAGATATATTTGCTCTTTTTTG | |||||||||
gi|211903912|gb|DV978188.2|DV978188 GQ00612.B3_E13 GQ006: Cambium and phloem from mature trees Picea glauca cDNA clone GQ00612_E TCGATTGGTGCAGATCGGGAA EST sequence (targeted fragment marked with yellow): CAAGATCTTTGTGTTTTTTTCTGTTGGAGAGAAATTCGGAATAAATGAACTTAAAGGATATGTTCATCGCATGAGTATTCACGATGTGCACCAATCAATAATTATTGTGCAAAATCGAATAACACCACAGGCAAAGAAGGGTGTTAAAGAGATATCAAAGTCATTTTTAATAGAGATATTTGAAGAGACAGACTTGCTTATCAATGTAAAAGAGCACGCGCTTGTACCTGAACATCAAATTCTCACGTTGTCAGAGAAGAATGCGCTTCTAAAACAGTATGGTGTCAAAGAAAATCAGCTCCCCCGTATGCTAGAGACTGATCCGATTGCGCGATACTATGGCCTCAGACATGGCAAAGTTGTGAAGCTGACTTATAACAGCGATTTAACAGGACATTATATTACTTATCGTGTTGTTTGGTAGATTTGGTTCAGTTCGAACAGATGAAGCACATACTTCGATTAACATGATTGTACTTAATAGCTAGTAATGGTCTCTCGGCTCCTTTTCAGCATTTAGTTTTTGCTACTTAAATATTGCTGGAAACCATCCTGGTTTAATAGATCTATCCTTTTCCTATTTGATAGATTTACAAATTTGGGCTTTGTATGGCAGCAGAGAAAACACAGTGGTTAAGCATCTAGGTGGTATGTCATGATCTACTAGTAGTTGAATGCTACTTGGAGCAATCACTATACATATAGCTTTATTTCATTAGTGTTGAGTGTTGTTGCTCATGGGCTTGCTATTTCTGTTTTAACTTTTGATGCTTGCCTGTGATTGTTTCTATTTTTCTATAGTGATTTTATCACCAT | |||||||||