| mature miRNA: TCGCTTGGTGCAGATCGGGA species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|57817936|gb|CX619149.1|CX619149 GABR1_43_F11.g1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_4 TCGCTTGGTGCAGATCGGGA EST sequence (targeted fragment marked with yellow): ATCCTCCCACCATCATTGCAGCAAGCACTGAAGCAAAAAAAGCCCAAACCAATCAAGCCGAATAGGGCACTCGGCAAAGGCTCCGTTTACACTAGTGCTAGGTGCAGAGCAGTGTGCTTGATATACAGCTAGCTTTCGTACTGATCAGCACCAAGCAAGCAAGCTAGCTAGCTGTTGAGGAGGTGTGTGAGGTCGGTCGTCGTCGATCGAGATGAAGAAGGGCTCAATGATGGCCTTGTTGGTCCCTCTGGCTGTTGCGCTCCTCTTGTCAGGTCCATCGTCGTTGGCAACGGCGGCATCCGGCGGCGGCGGCCCTGTGGAGTGGGGGAAGCTGGACCCGCACTTCTACGACCAGTCGTGCCCTCACGCGCAGCACATCGTGGCGTCCATCGTGGGGAAGGCGCATTACCAGGACCCGCGCATGGCCGCCTCCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAAGGGCTGCGACGCGTCGCTGCTGCTGGACAGCAGCGGGTCCATCGTGAGCGAG | |||||||||
gi|45963803|gb|CN133168.1|CN133168 OX1_10_C04.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_10_C0 TCGCTTGGTGCAGATCGGGA EST sequence (targeted fragment marked with yellow): CATTCACCAGGCAGCGAGCGGGGAGAGCGGGGCAGCGGCGGGCCGCGGGCGCCGTGCCTGCCACGCCTCCTCCTCCTCCTCCTCCCTGCATCCAATCCACGCCACACGAGCGACCGAGCAGGGCGAGGAAGGGAAGATGTCAAGCGCCCCAAGCCGCCGCGCCGCCTCGGGCTCGCTTGGTGCAGATCGGGACCTGCCGCCGTGCTCGGACGGGACAGATCCCGCCTTGCACCAAGTGAATCCGAGCCGGAGCAGCCGACCGACCGACCGCCGCCGCCTGCGCTGCTCTGCTCTGCTCTTGATTGCGATGCCGTAGCCTGCTTGCTGCGTGTTTTTTTTTAATTTTTCTGATAAGGATCGTGCGGATTGCTGTAATGATTCTGTGTCGCCATGCGGATTGCTGTGATGATTCTGTGTCGCCGTGGGAATTATTGCCAGCCATACGGCGACCGACCGCCGCCGCCTGCGCTGCTCTGCTCTTGATTGCGATGCCATGGTGTTTTTATTTTTTCTGATAAGGATCGTGCGGATTGCTGTCGTCCTGTGTCGGCGCGCGGATTGCTGTCCTTCTGTGTCGCCGTTTGGAATTATTTGGCGCCGTGCGGATCTCTGCTCTCGATTAAGCAATCCGGATCTGGATCTGACGCGTAATTTCGGTAGTTTGATCTG | |||||||||
gi|18069679|gb|BM330542.1|BM330542 PIC1_53_D04.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum bicolor cDNA, mRNA sequence TCGCTTGGTGCAGATCGGGA EST sequence (targeted fragment marked with yellow): TTACAACTGCAGATATCCATACTTTATTTAGAGACGTACACCAGAAATGGATTGAGGGCGGGAACTATGAGCTTTGCATCGAAGATGTGAGGGATGAAATCTGGGACATGGTGAAGCCCGCAGATCCTCTCAGGATCTCGCTGCCAGATCTTCTTTCTTGCAAGCAAGGCGGGACTATCGCCAGCATGCTTATAGATGTGCGTGGCTTCTGGGCCCACGACAACAGGGAGAACCTTCTCCAGGAAGAGGAAGAGCAAGTGGAAGAGGCATGAGTTCTGTTCTCCAGCTGTCAAGTAACCGTATCCGGTGCCTCAAAGTCGCAACATCCTACGAATTGCCTGTACTGTGGTATCAGTCACTGTAACTTAGCTAGCGTATTAGATCCGTCGCCACCTCCTGTTTCCTGGAGCTTGTTGTAAGTGTGCCATAGTGGTCTTTTGAACTTGTTGAGGCTAGCGTGGTTTGGCCATGTTGACATCTGAACAATACAGCCTCGGCAGCCTGTATGTACATCTCGATTGCACCAAGCGCGCAATCCTGACTACGGCATTATGCCTGTAAGCCTATATGTAATATACATTGTGTTC | |||||||||
gi|37707016|gb|CF757791.1|CF757791 DSAF1_22_D01.g1_A011 Drought-stressed after flowering Sorghum bicolor cDNA clone DSAF1_22_D01 TCGCTTGGTGCAGATCGGGA EST sequence (targeted fragment marked with yellow): AGAGGAAATCATCTGCTTTTATTTCGAAAAGAATATTTTTCAACATACAAATACTGGGAGCTGCCTGCTCATAATACCCCCAGCAGGCCAGCACTCCATCGTCATCATCCAGAATCCATACCCTAGCCCATTTCGTCAGCTCCTTATTTTCTCCTGTCTGCACCAAGTGAGAGGAGCTCAAAGTTCCTGATAGCATCATCATGTGAAGACCTTCCGATTTTTGACAAAGACGATGATCTCATCTCAGCTCCACCTGAAGGATGTGCCCTTTGGGCAGTCGGTGGACGGCTGCTGCTACTTGGGACCAGGCGACCCATGCGGTTTGGGTCGCTTGGATCTCCAGAAGAGCTTGGTTTGCTTGATGAAAGCACGGCTCTTCTTGACGTGCTTCCGTTGCGCGATGATGATGATGGCCTTGTTTTATCCGAATCAACAGTCACCTTGGATGGCATCAGT | |||||||||
gi|34442377|gb|CF429676.1|CF429676 PH1_23_A05.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor cDNA clone PH1_23_A05_A002 TCGCTTGGTGCAGATCGGGA EST sequence (targeted fragment marked with yellow): CTACTGGGTTGTTGTTTGCGGACAAGCCGCGGCGCGCCACCCATGGCGCTCGCCATCGGCACTGCGCTCTGCTACGCCTTCTGGCTCGTGTGCCTCTACCACGTGTGGACCTACTTCGCCACGCGCTGGCGCTTCCTATCGACCGGCAGACCCAAGTTCCCGATCGGCGCCAAGCGCCGCGTTCGCTTCGTGGATGACCGCCCGCTCATCATAGACATGACGCGCTTCTCCGATGTGTACAATTGGATGCTTTCCCTCATGATCGTCCCCTACGAATCCACGGTCGTGTTTATCGACCAGCGCATGCAGGAGAAGCTTCCATCGGAGGACTTTAGCCAATGCCTCCTCAGCTACCAGGAGAAGCAACACTCGGCGGTGCACTTTCAGATGAAC | |||||||||
gi|45985473|gb|CN145907.1|CN145907 WOUND1_36_C12.b1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_36_C12_A002 3', mRNA s TCGCTTGGTGCAGATCGGGA EST sequence (targeted fragment marked with yellow): GGCGACACAGAATCATTACAGCAATCCGCACGATCCTTATCAGAAAAATTAAAAAAAAACACGCAGCAAGCAGGCTACGGCATCGCAATCAAGAGCAGAGCAGAGCAGCGCAGGCGGCGGCGGTCGGTCGGTCGGCTGCTCCGGCTCGGATTCACTTGGTGCAAGGCGGGATCTGTCCCGTCCGAGCACGGCGGCAGGTCCCGATCTGCACCAAGCGAGCCCGAGGCGGCGCGGCGGCTTGGGGCGCTTGACATCTTCCCTTCCTCGCCCTGCTCGGTCGCTCGTGTGGCGTGGATTGGATGCAGGGAGGAG | |||||||||
gi|30976109|gb|CD232644.1|CD232644 SS1_46_D08.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone SS1_46_D08_A012 5', mRN TCGCTTGGTGCAGATCGGGA EST sequence (targeted fragment marked with yellow): GAAAAGATCAGGAAGAAGATTATACGCCCAAGTCAGCCAGGAGTTCCATGATGCCATTTCATGCAGTTCCTGACCTGCTTAGCTGGGAAGATGGAGATGGTAGCAACAGCCTTGGTGCTAAACCTTCTTTCCAACTTAACACAGAAGTTAAATGCGCAGAATGGGTTTCATCCTCCAGGCCACCTATGGAGGGTGAATCTCATTCTGGGGACCTTCCAGAGTACCTTGACACTGAAGTTGCATCAAGCTCAAACACAGTTGTACTTGGTGCAAGCAATACATCTGAGAAAGGTGGAAATGTTGATCTCATGTCCTATTCAAACAATGAAATGCCATTAGATAACCTGATTCATGGGTCCATGGAGCTGCCTTCTGAATTTGTCACGGAAACATTGCCGGTCATATCTCGGGACCTACACCCTATCCCAGAGGAGAGAGTTGTTGAGAACTTCAACATGCAAGAAAAGCATGAAACAGCAATTTTTACTGATTCAGCTGCTGCCTTGACTGGCCATGTAATCGAACAGCACTTTGATGTTGGATCTGATGGAACTCTGAGCTCTAAAGTTGTTTCCTCGTATCCTCAAGTTAATGATGTCATCCAATCTGCATCAAGTGAACATGAAGAAATCTTGAATCCCTTTGCTTTGATGGCTACTGAACCT | |||||||||
gi|7659286|gb|AW745548.1|AW745548 WS1_35_F02.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA sequence TCGCTTGGTGCAGATCGGGA EST sequence (targeted fragment marked with yellow): AGAAATGGATTGAGGGCGGGAACTATGAGCTTTGCATCGAAGATGTGAGGGATGAAATCTGGGACATGGTGAAGCCCGCAGATCCTCTCAGGATCTCGCTGCCAGATCTTCTTTCTTGCAAGCAAGGCGGGACTATCGCCAGCATGCTTATAGATGTGCGTGGCTTCTGGGCCCACGACAACAGGGAGAACCTTCTCCAGGAAGAGGAAGAGCAAGTGGAAGAGGCATGAGTTCTGTTCTCCAGCTGTCAAGTAACCGTATCCGGTGCCTCAAAGTCGCAACATCCTACGAATTGCCTGTACTGTGGTATCAGTCACTGTAACTTAGCTAGCGTATTAGATCCGTCGCCACCTCCTGTTTCCTGGAGCTTGTTGTAAGTGTGCCATAGTGGTCTTTTGAACTTGTTGAGGCTAGCGTGGTTTGGCCATGTTGACATCTGAACAATACAGCCTCGGCAGCCTGTATGTACATCTCGATTGCACCAAGCGCGCAATCCTGACTACGGCATTATGCCTGCAAGCCTATATGTAATATACATTGTGTTCATTTCGTGCATGGCTTGTGGATCGTT | |||||||||
gi|37706516|gb|CF757291.1|CF757291 DSAF1_16_B07.g1_A011 Drought-stressed after flowering Sorghum bicolor cDNA clone DSAF1_16_B07 TCGCTTGGTGCAGATCGGGA EST sequence (targeted fragment marked with yellow): GAGAAAATACCATAGGTTTATATATGTCTCATTTGATTTTATGGACAAGTCGACGAGGTTGAGCCCTAGTTATTTCCAAAACTCTCATTTATTCTGCGGGTTCGCCAGATTCATCGAAGGAACGCAGAAGTGGATGGGGGAGAATGGAGATGAGGAGAGAAAAAAAAAGAATTGCTTCAGGGAAGAACTCTATGCATGTGCACTCAAAGCATCCTTTCAGAAGCTGCCTTCATAGGTGATCTCAGTATTTTCAGGGACACTATCATCAGCTGCTGGGCTTCTGCTCTGCACCAGGTGAGGCCCCAACTGATGTCACAAAATTGCAGACTGCGCATTTCACAGACCTAGCTCCATACTGGTACATGAGCAGCATACGGCAGTTCCCGCAGTTTACATGCGCAACTTGATTTGCTTCCATAGCCAGGTTAACGGTGTGGCAGCAAGAACATTGTACACTAGTCGCACCACGTAAGTACATCAGGAGAGTGTGGCATCCTCCACAAACTAACTGTGCCATCTCAGTTCCTGGAGCCGGCACGGCAGTGACGGTGCTGCAAACGGCAC | |||||||||
gi|18069680|gb|BM330543.1|BM330543 PIC1_53_D06.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum bicolor cDNA, mRNA sequence TCGCTTGGTGCAGATCGGGA EST sequence (targeted fragment marked with yellow): TCGAAGATGTGAGGGATGAAATCTGGGACATGGTGAAGCCCGCAGATCCTCTCAGGATCTCGCTGCCAGATCTTCTTTGTTGCAAGCAAGGCGGGACTATCGCCAGCATGCTAATAGATGTGCGTGGCTTCTGGGCCCACGACAACAGGGAGAACCTTCTCCAGGAAGAGGAAGAGCAAGTGGAAGAGGCATGAGTTCTGTTCTCCAGCTGTCAAGTAACCGTATCCGGTGCCTCAAAGTTGCAACATCGTACGAATTGCCTGTACTGTGGTATCAGTCACTGTAACTTAGCTAGCGTATTAGATCCGTCGCCACCTCCTGTTTCCTGGAGCTTGTTGTAAGTGTGCCATAGTGGTCTTTGGAACTTGTTGAGGCTAGCGTGGTTTGGCCATGTTGACATTTGAACAATACAGCCTCGGCAGCCTGTATGTACATCTCGATTGCACCAAGCGCGCAATCCTGAGTACGGCATTATGCCTGTAAGCCTATATGTAATATACATTGTGTTC | |||||||||
gi|30964806|gb|CD221372.1|CD221372 CCC1_54_E01.b1_A007 Callus culture/cell suspension Sorghum bicolor cDNA clone CCC1_54_E01_A00 TCGCTTGGTGCAGATCGGGA EST sequence (targeted fragment marked with yellow): AATCTCAAGTTGTCTTATTTCTAGTAGGGGCATTTTTCCGAAAGCAGTACTGTACTATAATACTCATACATAATTGACGACCCACAACTCCACAACTAGGCTCAGCTGATGAAGAACAAAGTCACGAAAGCATCAATCAATACAGAAAACAGGGCCTCGTGCCCTCAACTATGCGACCGTCCGCCGAGAGGAGACTAGATAGTACAAGTGTACAGCTCGTATTGATATCTTCTCACTACACACGGCATGTTCTACTCTGCACGGAACACACAAATGCTGTTAACTGCTCCAAACCCCTCAACTGTTACGTTTTTAATTAGATGAAGCGTATAACTTGTACCAATGCAGCCTATCTGCACCAAGTGACTAACCTGCAGTTGCGGAGCCATGAACGTTTTTTACATACTTTTGTTATTATCTTCCTCCTGATAGGTTGGAGATCGTGCCGAAACTGGCCACCGTATCTGGATGTGAAAAGGAGGACATGCCAAAGTCTTCGCCCTGCATCATCATCGCTAGCACATCGAAGCTGGAATCCGTCGGTGTCAGCTCTGGGAGTGGCGTCACGCCGTCGAGATAGCGCATGACCTGCCCCATGCCTGGCCGTGCGTTGGCGAACGGGTG | |||||||||
gi|9854393|gb|BE599320.1|BE599320 PI1_88_A11.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence TCGCTTGGTGCAGATCGGGA EST sequence (targeted fragment marked with yellow): GAAACAGTCGTGAGATGGACTTTGAAAGCTTTCTTGATTTTGTTTTGGCTCTAGAAAACAAAGATACCCCTGAAGGCCTGACATATTTATTTAGATGCCTTGATCTTAATGGAAGAGGGTTCCTTACAACTGCAGATATCCATACTTTATTTAGAGACGTACACCAGAAATGGATTGAGGGCGGGAACTATGAGCTTTGCATCGAAGATGTGAGGGATGAAATCTGGGACATGGTGAAGCCCGCAGATCCTCTCAGGATCTCGCTGCCAGATCTTCTTTCTTGCAAGCAAGGCGGGACTATCGCCAGCATGCTTATAGATGTGCGTGGCTTCTGGGCCCACGACAACAGGGAGAACCTTCTCCAGGAAGAGGAAGAGCAAGTGGAAGAGGCATGAGTTCTGTTCTCCAGCTGTCAAGTAACCGTATCCGGTGCCTCAAAGTCGCAACATCCTACGAATTGCCTGTACTGTGGTATCAGTCACTGTAACTTAGCTAGCGTATTAGATCCGTCGCCACCTCCTGTTTCCTGGAGCTTGTTGTAAGTGTGCCATAGTGGTCTTTTGAACTTGTTGAGGCTAGCGTGGTTTGGCCATGTTGACATCTGAACAATACAGCCTCGGCAGCCTGTATGTACTTCTCGATTGCACCAAGCGCGCAATCCTGACTACGGCATTATGC | |||||||||