| mature miRNA: TCGCTTGGTGCAGATCGGGAC species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|18222117|gb|AV926320.1|AV926320 AV926320 K. Sato unpublished cDNA library, cv. Haruna Nijo second leaf stage seedling leaves TCGCTTGGTGCAGATCGGGAC EST sequence (targeted fragment marked with yellow): GAGAGAGAGAACTAGTCTCGATCCGCACCGAGCGCGCACCGGTGGAGATCGTGGTGGGAGGATGTCGTCGGACTACTCGTCGTCGTGGGCGCGCGCGCTCGTGCATATCTCGCCCTACACCTTCTCCGCCATCGGCATCGCCGTCTCCATCGGCGTCTCTGTCCTCGGCGCAGCATGGGGGATCTTCATCACGGGGAGCAGCCTCATCGGGGCCGCCATCAAGGCGCCCAGGATCACCTCCAAGAACCTCATCAGTGTCATCTTCTGTGAGGCCGTTGCAATTTATGGTGTAATCGTGGCAATCATCCTCCAAACAAAGCTTGAAAGTGTGCCAACATCCCGAATGCATGATCCAGAGTCTATGCGAGCTGGTTATGCAATCTTTGCCTCAGGTCTTATTGTCGGCTTTGCTAATCTTGTTTGCGGGGTATGCGTGGGAATAATCGGAAGCAGCTGTGCACTGTCTGATGCCCAGAATTCAACACTCTTTGTAAAGATCCTGGTGATTGAGATCTTTGGCAGTGCTTTGGGCCTCTTTGGAGTGATCGTGGGTATAATCATGTCAGCTCAAGCAACATGGCCAACGAAAGTCTAATACCATCCATCTGGGAATCTCTGTAA | |||||||||
gi|21149273|gb|BJ470770.1|BJ470770 BJ470770 K. Sato unpublished cDNA library, cv. Haruna Nijo adult, heading stage top three lea TCGCTTGGTGCAGATCGGGAC EST sequence (targeted fragment marked with yellow): ATTCGGCACGAGGCCCCGATCNGCACCGAGCGCGCACCGGTGGAGATCGTGGTGGGAGGATGTCGTCGGACTACTCGTCGTCGTGGGCGCGCGCGCTCGTGCATATCTCGCCCTACACCTTCTCCGCCATCGGCATCGCCGTCTCCATCGGCGTCTCTGTCCTCGGCGCAGCATGGGGGATCTTCATCACGGGGAGCAGCCTCATCGGGGCCGCCATCAAGGCGCCCAGGATCACCTCCAAGAACCTCATCAGTGTCATCTTCTGTGAGGCCGTTGCAATTTATGGTGTAATCGTGGCAATCATCCTCCAAACAAAGCTTGAAAGTGTGCCAACATCCCGAATGCATGATCCAGAGTCTATGCGAGCTGGTTATGCAATCTTTGCCTCAGGTCTTATTGTCGGCTTTGCTAATCTTGTTTGCGGGGTATGCGTGGGAATAATCGGAAGCAGCTGTGCACTGTCTGATGCCCAGAATTCAACACTCTTTGTAAAGATCCTGGTGATTGAGATCTTTGGCAGTGCTTTGGGCCTCTTTGGAGTGATCGTGGGTATAATCATGTCAGCTCAAGCAACATGGCCAACGAAAGTC | |||||||||
gi|18222127|gb|AV926330.1|AV926330 AV926330 K. Sato unpublished cDNA library, cv. Haruna Nijo second leaf stage seedling leaves TCGCTTGGTGCAGATCGGGAC EST sequence (targeted fragment marked with yellow): AATTCGGCACGAGGAGAGAGAGAACTAGTCTCGATCCGCACCGAGCGCGCACCGGTGGAGATCGTGGTGGGAGGATGTCGTCGGACTACTCGTCGTCGTGGGCGCGCGCGCTCGTGCATATCTCGCCCTACACCTTCTCCGCCATCGGCATCGCCGTCTCCATCGGCGTCTCTGTCCTCGGCGCAGCATGGGGGATCTTCATCACGGGGAGCAGCCTCATCGGGGCCGCCATCAAGGCGCCCAGGATCACCTCCAAGAACCTCATCAGTGTCATCTTCTGTGAGGCCGTTGCAATTTATGGTGTAATCGTGGCAATCATCCTCCAAACAAAGCTTGAAAGTGTGCCAACATCCCGAATGCATGATCCAGAGTCTATGCGAGCTGGTTATGCAATCTTTGCCTCAGGTCTTATTGTCGGCTTTGCTAATCTTGTTTGCGGGGTATGCGTGGGAATAATCGGAAGCAGCTGTGCACTGTCTGATGCCCAGAATTCAACACTCTTTGTAAAGATCCTGGTGATTGAGATCTTTGGCAGTGCTTTGGGCCTCTT | |||||||||
gi|24328355|gb|CA031940.1|CA031940 HX11I23r HX Hordeum vulgare subsp. vulgare cDNA clone HX11I23 5-PRIME, mRNA sequence TCGCTTGGTGCAGATCGGGAC EST sequence (targeted fragment marked with yellow): GGAATTCGGCACGAGGGACGGGCCCGTGCTGCTTCTCTCCCGACGCCCGCTTACTCGCCGTCGCCGTCGACTACCGCCTCGTGATCCGCGACGTCGTCACCCTCAAGGTGGTGCAGTTGTTTTCGTGTGTGGACAAGATAAACTTTTTGGAGTGGGCACCGGATTCAGAATACATTCTATGTGGACTTTACAAGCGGCCAATGGTGCAGGCTTGGTCACTTAGCCAGCCTGACTGGACCTGTAAGATTGATGAAGGATCTGCAGGGATTGCTTATGCTCGCTGGAGTCCTGACAGTCGGCATATACTCACTACATCAGAGTTCCAACTTCGTTTGACTGTATGGTCTCTTGTAAATACTGCCTGTGTTCATGTACAGTGGCCAAAGCATGCAGCAAGAGGTGTTTCTTTCACTAAGGATGGCAAGTTTGCTGCGATCTGCACCAGGCGGGACTGCAAAGATTACGTAAATTTGCTGTCATGTCATTCCTGGGAGATAATGGGTGTATTCGCTGTTGACACACTAGACTTAGCAGGCGTGGAGTGGTCGCCTGATGACAGTGCTATTGTGGCCTGGGATTCACTTCTTGAATACAAGGTTCTAATATATTCACCAGATGGGCGATGCTTGTTCAAATATTCGGCATATGAAAGTGGGTT | |||||||||