| mature miRNA: TCGCTTGGTGCAGATCGGGAC species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|44678002|gb|CR291436.1|CR291436 CR291436 Oryza sativa library (Han B) Oryza sativa cDNA clone y746c10p3, mRNA sequence TCGCTTGGTGCAGATCGGGAC EST sequence (targeted fragment marked with yellow): TAAGCTGACTAGTCTAGAGTCCAATGTTGCTCAAGTTGCGACATATATGGGTCGATATGGTCGACATGTTTTTTTACTCAAAGCTCTGGTGTAATGAGCTATGCCACGTGTGTTCACCTGTACATATATTTGAAAGCTTCTTATCAATGTAAATTTACCATAACCCATCAGTAATAATACCATCAAGCAGACTAAACTACAGGAGAACCACTACATGATAAGCACACCGGACAAGAATGGCATGTGGAATTTGTTCTTCTTGACCATGCAACCTGTGCATTCTAGCTGCATTTCTCCTTTGCTCCTGAAGCAGCTGCAGCTGGTATTGCCTCTGACCCTTCTGAACCGTGGAGATGAGCCTCATGACGACGTAGAACGGCAGCAAGATTCCACTAGCCCGGAGCAAGTATATCGTCAAGAGGCTGAAGGCGTACTGGTGTGCAGCTCCGACCGTCACGACAGCGACGAGATGCCTCAGCAGCAGAACAGCCGTGAACGTGACGGGCACCGATCTGCACCAGGTGGCGCTCCTGACGGACGCTCCGGGACCCTCCGAGTGAAACCATGACAGCGAAAAAAAGGGGAGTCCACCCCGCAGCAAAAAGAGCAGGAGAACACAACAGCGCTCCCAAAG | |||||||||
gi|88724251|gb|CI747510.1|CI747510 CI747510 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro TCGCTTGGTGCAGATCGGGAC EST sequence (targeted fragment marked with yellow): TAAATTATTTTATACCAAATGCTTACAAGAGACAGCAAAAACAGTTTAAATCTATATTTCTAATCACTGGTGGAGAAACCAATCTTTGGTCGGTCGGCCGAAATCCACAATAGTCCCGATTCCACTAAAAACCGGGACTAAAGATGATCTTTAGTCCTGGTTGGTGGCTACAGTGGGCATATTTGATCTTTAGTCCCGGTTGGCACCAACCGGGACTAAAGATGATCTTTAGTCTCGGTTCTAAACCTGTTAGTCCTTGTCAGGCCCCCAACTTTACTCCCGGTTGGTGTTATAAACCTGGACTAAAGATCTAGAAGATTTTTAATCCCAGTTGGTATTACCAACCGGGACTAAAATTCAANGCTTA | |||||||||
gi|88963372|gb|CI028388.1|CI028388 CI028388 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c TCGCTTGGTGCAGATCGGGAC EST sequence (targeted fragment marked with yellow): TTAACGCCGACAGATCATAGATAGAATAAGTAATCGAGAATTAGGCACCAGATCTAGATCTGAAAAAAAAATTAAATCTAATACAAACGCGTACGCCCCACACCTACGAACACGAACACGAGGAGGATCAGCAATTCGATCCGATTCATCGCTAACCCCGTCCCGATACCGACCCAGAAACGAAGGAGAGACAATAAAAACAACCAAGCAGCGCAGCATCGGCGGCGGATCGGCGGAAGGAGGGCGCTACGCCGGCTCCGATTCACTTGGTGCAAGGCGGGATCCGGCCCCGGCAGCGGCGGCGGCGGGTCCCGATCTGCACCAAGCGAGCCCGAGGCGGCGGCGCCATGAGACGAGACGAGACGCGCGGTGTCTCTCTCGAGAGGGAGACGAGGTGGTGGAGGAGACGTGGCTGCTACGGCGACCGCGTCTTCCTCGCGGTGGCGGTGGCGGTGCCAGTAGGCCAACAGTGCTCGAGGAATTCCGCAGCTTTTAGAGCAGAAGTAACACTTCCGTACAGGCCTAGAAGTAAAGGCAACATCCACTGAGGAGCAGTTCTTTGATTTG | |||||||||
gi|88847010|gb|CI001282.1|CI001282 CI001282 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c TCGCTTGGTGCAGATCGGGAC EST sequence (targeted fragment marked with yellow): CTTCTCTTTGTAATTATTAAGACACCATTTGGCACACATGGGCTAGTTACAACTTACAGTTCTCTCAAAAGACACACACAGTCACAAAGAATTAATACAGATCATCAGCCAAAGAATAGAGAGCTCTAGCTCTTGATGCACAACCAACCAACCATACACACACACGCACACACAAAATGCACGTTACATACATTATACGTCACGTTGTCACGGCGAGCTAAGCTATGGCTTACCGATTTGCATCAGGCGACCCTGCAGTTTGCCCTGACCTTGCCGCTGCTGCCGGTGAGCACGCCGACGGCGCCCATCTTGACCATGGCGGCGGCGAAGTCGCTCTGGAAGGTGGAGGCGTCGTTGGCGTAGGCGACCACCTGGACGGCGGTGTTCTTGTCGCCGAGCAGCGCCTGGTCGGAGGAGAGCAGGCCGCGGTTGTTCATGACGCCCTTGAAGAAGCCCTCGTCGAAGGCGTTGGGGGTGACGGCGTCCATGGGCACGAGCGCGCCGCCGCCGGCGGCGCCGCCGCTCTGCGGGCACTGCTATGCC | |||||||||
gi|88215991|gb|CI215840.1|CI215840 CI215840 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft TCGCTTGGTGCAGATCGGGAC EST sequence (targeted fragment marked with yellow): AATTAGCTTCTCTTTTTTTTAATTATTAAGCACCATTTGGCACACATGGCTAGTTACAACTTACAGTTCTCTCAAAAGACACACACAGTCACAAAGAATTAATACAGATCATCAGCCAAAGAATAGAGAGCTCTAGCTCTTGATGCACAACCAACCAACCATACACACACACGCACACACAAAATGCACGTTACATACATGATACGTCACGTTGTCACGGCGAGCTAAGCTATGGCTTACCGATTTGCACCAGGCGACCCTGCAGTTTGCCCTGACCTTGCCGCTGCTGCCGGTGAGCACGCCGACGGCGCCCATCTTGACCATGGCGGCGGCGAAGTCGCTCTGGAAGGTGGAGGCGTCGTTGGCGTAGGCGACCACCTGGACGGCGGTGTTCTTGTCGCCGAGCAGCGCCTGGTCGGAGGAGAGCAGGCCGCGGTTGTTCATGACGCCCTTGAAGAAGCCCTCGTCGAAGGCGTTGGGGGTGACGGCGTCCATGGGCACGAGCGCGCCGCCGCCGGCGGCGCCGCCGCTCTGCGGGCACTGCTGTGCCAGCTGCGCCACGTACGCCGGGTCCATGGTCGGGTCCTGCCCGCCGCCGGC | |||||||||
gi|88242498|gb|CI242347.1|CI242347 CI242347 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat TCGCTTGGTGCAGATCGGGAC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATTAGCTTCTCTTTTTTTTAATTATTAAGCACCATTGGGCACACATGGCTAGTTACAACTTACAGTTCTCTCAAAAGACACACACAGTCACAAAGAATTAATACAGATCATCAGCCAAAGAATAGAGAGCTCTAGCTCTTGATGCACAACCAACCAACCATACACACACACGCACACACAAAATGCACGTTACATACATGATACGTCACGTTGTCACGGCGAGCTAAGCTATGGCTTACCGATTTGCATCAGGCGACCCTGCAGTTGGCCCTGACCTTGCCGCTGCTGCCGGTGAGCACGCCAACGGCGCCCATCTTGACCATGGCGGCGGCGAAGTCGCTCTGGAAGGTGGAGGCGTCGTTGGCGTAGGCGACCACCTGGACGGCGGTGTTCTTGTCGCCGAGCAGCGCCTGGTCGGAGGAGAGCAGGCCGCGGTTGTTCATGACGCCCTTGAAGAAGCCCTCGTCGA | |||||||||
gi|88564627|gb|CI495344.1|CI495344 CI495344 Oryza sativa (japonica cultivar-group) 2 nuclei stage pistil Oryza sativa Japonica G TCGCTTGGTGCAGATCGGGAC EST sequence (targeted fragment marked with yellow): GAAACACACCTTGGTAGTGGTAGATGTATAAGTATTTCAAAACTCGTACAACAGCGGGGATTATTAGTTATATTCCCCTTAGGAGCACATCAAAAATACAATCCATCAATCGTGTATAAGAATCACACTAGTATTAGTAATTCATACTCAGTATTATCCTTTAGTCTGCTTCAGTGATCAGTGTCAGCAGGTAGCGTTCAATGTCGCCGCCCTCAGACCTCGGGGACGTGGCCGCCGCCGGAAGGCCGCCGNGGACGTCGTGGCCGCAGGCAAAGGCGATCTCCTGCAGCTTGATCGAAGCGCTGGAGCTGAACACGAGCAGCGGCTTCTTCCGCGGNACGGGCACCGGCTCTGCCTCGCGGTTCAGGATCTGCACCAGGCGACGCATCGCCGGGCGCTCGTCGCAGTTGGGGTTCGCGCAGCTCACCCCGACGA | |||||||||
gi|89196138|gb|CI395556.1|CI395556 CI395556 Oryza sativa (japonica cultivar-group) seed Oryza sativa Japonica Group cDNA clone J TCGCTTGGTGCAGATCGGGAC EST sequence (targeted fragment marked with yellow): GGTTACAACTTACAGTTCTCTCAAAAGACACACACAGTCACAAAGAATTAATACAGATCATCAGCCAAAGAATAGAGAGCTCTAGCTCTTGATGCACAACCAACCAACCATACACACACACGCACACACAAAATGCACGTTACATACATGATACGTCACGTTGTAATGGCGAGCTAAGCTATGGCTTACCGATTTGCATCAGGCGACCCTGCAGTTTGCCCTGACCTTGCCGCTGCTGCCGGTGACCACGCCGACGGCGCCCATCTTGACCATGGCGGGGGCGAACTCGATCTGGAAGGTGGAGGAGTCGTTGGAGTACGC | |||||||||