| mature miRNA: TCGCTTGGTGCAGGTCGGGA species: Citrus clementina database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|110839420|gb|DY262187.1|DY262187 KN0AAP5YF13FM1 Fruit-TF Citrus clementina cDNA 5', mRNA sequence TCGCTTGGTGCAGGTCGGGA EST sequence (targeted fragment marked with yellow): CGAAAGTTAAAATCTTTTTGAGTCGAGTGGGAAGTGAGAATTGAGAAGGAGAGTCGAGTTCGGAGACAGCAAGACGAAACAGCTCTTCTTCCAATAAATCTCAAAGCATTTGTTTGGTTTTATTTAAAGCAATTTTCTCAGCAAACTCTTCTTCTAATAAATTTTAAAGCATTTGTTTGGTTTTTATTTAAAGCAATTTTCTCAGCGAAGTTTTCAATTTTTTCTCTAAAATTTTCCTGGGAAAATGTTTATCGAAAATTTCAAGGTTGAGAGCCCAAATGTGAAGTACACAGATAATGAGATTCACTCTGTGTACGATTATGAAACCACTGAGCTTGTTCATGAGAACAGAAATGGCACTTATCAGTGGATTGTCAAGCCCAAAACTGTCAAATATGAGTTCAAAACCGATGTTCATGTCCCTAAACTTGGGGTTATGCGTGGGGGTAGGGGAGCAAATAACTGTCCCACTCAAACCGGCGCAGCCTATACCTGAGCCAATCTAGCGATTCATTTGGGCTAGAAAAGACACTCGACATGGACATCATCCTCGTCGAATAAATTCCGCTCTTTAGCCCCATCACAAGGTGGCCGAAACACCGTAAGATACCCCCCGTCCCTGACATGTTTCATCTCGCAGTGTTGTGCTAATTTGTCATGCGCGCTTTCTCAAGACTGATAATCGACATGTTGCCATTCACATAAACTCCTTGTCATGGTGTAAACCGGATACGCTCCCCCCTCCCCCCTCCATCCTCTTAGTACCGGCCCCAATTGTCCCCAAGGGCTTGCCGCACCACCCAACATCCACGACCCACACGGATTGCGACGAGAGAGTGGCGAGCCCAGCATTGATCTCAACCCCCATCTTTTAGATTATAACAAAAGCCACGTTCTAAAACATACCTTCTTGTTGAATTAGACCCAATTGACGACTATCGCGTATGTCATATGATGATAATCGATTGCAGCTAAGAACACGATTGCGTAGTATGAGAATAGAACTATCCTCTTCATATTGTTATTTATACGAAGTCTTAACCTGTATACGGTGTCTTGTAAATGATCTCCTCCTGCCCCAAGCGACCTCCGTTATCCCGTCGGTTAACATTGATCTAGTTGACCAACTCACACTGACATGTCCCATTCGCAAACTTGATCACTCGCAACTGTCCATCGAACCGAATACGATAATCAGCTGTTCAGGTTTACCGCTATATCATATCAGTGTTTCGCCGTGAACTTGTAGATTCACTCACGACGATCACCCTTATACCGCTCGAAACGAAACGATGACGCAACTCCTCGTAAGCTTATTGATCCAGAAACTACGAACCTTGCACGAGAACTAC | |||||||||
gi|218793638|gb|FC886632.1|FC886632 IC0AAA30CF02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA30CF02, mRNA sequence TCGCTTGGTGCAGGTCGGGA EST sequence (targeted fragment marked with yellow): TAATCAGCGTTGCAAAGCGAGCGAGCGAGCGAGCGAACACGAAAGTAAAAATGGCGTCTCTTTTGCAGTCGCTATTAGATCCAAAGAAGAACTGGTTAGCAGCCCAGCACATGAAAACGATCTCTAAACGTCTCCGTAATTTCGGGCTCCGCTACGACGATCTGTACGATCCCTACTACGATTTGGACATCAAGGAAGCGCTCGATCGGTTGCCACGTGAGATCGTTGACGCCCGTAACCAGCGTCTCAAGCGCGCCATGGACCTCTCCATGAAGCACGAGTACCTCCCTGAAGATCTTCAGGCTATGCAAACACCGTTTAGAAACTACCTACAAGATATGCTGGCCCTTGTAAGTATTCTAGAAATATATATATATGTATATAGATTTTATTGTGCATCCTTCTCTTAGATTATGCATCCTTGTTATGTAACTGGGAAAAAAAATCAATAGATAATAGGACAAGATATTGGTAATATATATTTAAAGCCTCCATGCTTGATGAGTTCTTCCAGAGGACAAGATGTTGGTCATTTATTTGTCTCTCACCTTGTTTAATGTGACTAAGCGGCCATCCAAAGAATTCCCCCACCCCAACACCCCCTCCCCCCACCCCCTCTTTTACCGATGGTAGATGTAATTTCATAAGGATTAATAAATGGTTGTGTGATACTGTTTTTATCTGACAAGATTCCTTGAAGTAATTTCCACCGGTGCTTAATGTAGTTCAAAATTTTGGGGAGCACTGAAATTCTCCTATGTCACATTGTTCAAATGGCTATGATTTATATTCTCTGGACCATGATTTCTTCATGTGTGTCTCTCTCTGCACCAAGCGAAGAGACTCTTGAGGACACCCC | |||||||||
gi|110856285|gb|DY272253.1|DY272253 IC0AAA30CF02RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence TCGCTTGGTGCAGGTCGGGA EST sequence (targeted fragment marked with yellow): TAATCAGCGTTGCAAAGCGAGCGAGCGAGCGAGCGAACACGAAAGTAAAAATGGCGTCTCTTTTGCAGTCGCTATTAGATCCAAAGAAGAACTGGTTAGCAGCCCAGCACATGAAAACGATCTCTAAACGTCTCCGTAATTTCGGGCTCCGCTACGACGATCTGTACGATCCCTACTACGATTTGGACATCAAGGAAGCGCTCGATCGGTTGCCACGTGAGATCGTTGACGCCCGTAACCAGCGTCTCAAGCGCGCCATGGACCTCTCCATGAAGCACGAGTACCTCCCTGAAGATCTTCAGGCTATGCAAACACCGTTTAGAAACTACCTACAAGATATGCTGGCCCTTGTAAGTATTCTAGAAATATATATATATGTATATAGATTTTATTGTGCATCCTTCTCTTAGATTATGCATCCTTGTTATGTAACTGGGAAAAAAAATCAATAGATAATAGGACAAGATATTGGTAATATATATTTAAAGCCTCCATGCTTGATGAGTTCTTCCAGAGGACAAGATGTTGGTCATTTATTTGTCTCTCACCTTGTTTAATGTGACTAAGCGGCCATCCAAAGAATTCCCCCACCCCAACACCCCCTCCCCCCACCCCCTCTTTTACCGATGGTAGATGTAATTTCATAAGGATTAATAAATGGTTGTGTGATACTGTTTTTATCTGACAAGATTCCTTGAAGTAATTTCCACCGGTGCTTAATGTAGTTCAAAATTTTGGGGAGCACTGAAATTCTCCTATGTCACATTGTTCAAATGGCTATGATTTATATTCTCTGGACCATGATTTCTTCATGTGTGTCTCTCTCTGCACCAAGCGAAGAGACTCTTGAGGACACCCCCCCCCCCCCCCGCGGGGGGGGGGGTGGGGGGGTNCCGGCGGCNNCTTTTTCGCCTTTTTCCTTGTGGTTTTGGGGTCCTTCTCCTGGGCTCTGGTCTTTTCCCTCCCCTCCGTGGCTTCCGGGGGCGCGGGGTTTGTCCCTTTCCCTCCGGCTCCCCGCCCCCTGGGTTCGGGGGGGGGGGTTTTTTTCTCGCTTGCCCCCGGTTGGGTGTTTTGGGGGGCGCCTTTGGTGGTTCTTTGTGTTGCTCTTTCCGCCCCCTTTTTTTTCGGTTTGTGGGGCGCCCCCCTCTTTTTTCTGGGTTGTGTCCCGTTGTTTTTTTTTTTTCGCTCGTTCCCGGGGGTCGGTGGTGGGGCGTGGCGCCTTGTTGTGTGTTGGCGTCTTTTCCCTGGGGGGGCCNNGNGGGGCCGCGTGTTTGTTGGGTGGTGTGGGCCCCCCGTTTTNCNGTTTTTCCTCCGTCCCCCTCCTGGCGCGTTGTGTTGT | |||||||||
gi|218847024|gb|FC932409.1|FC932409 C34208C09EF PostHarveN Citrus clementina cDNA clone C34208C09, mRNA sequence TCGCTTGGTGCAGGT-CGGGA EST sequence (targeted fragment marked with yellow): TTTTCTTGGACAAAGTGGGCTTTATAAGAAAGCATTGCTGGCGTCGGCTGAACAGTGTGGCAGCCAGGCTGGAGGAGCTGTATGTCCAGGAGGACTGTGTTGCAGCAAATTTGGCTTCTGCGGCAACACTCCTGCTTATTGCACCAATGGCTGCCAAAGCCAGTGCAGTGGGTCACCCTCACCCACGCCGACTAATCCGACTCCCGTACCTGCTCCAAGCGGCGGCGGGAACAATATCGGTTCACTAATTAGCAGGGACCTATTTGAACAGCTGTTGAAGCATCGTAATGATGCTGCTTGCCCAGGAAAAGGTTTTTACACTTACGACGCTTTCATCGCTGCCGCCAATTCCTTTGG | |||||||||