miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TCGCTTGGTGCAGGTCGGGAA
species: Fraxinus excelsior
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|306771423|gb|FR647047.1|FR647047 FR647047 WZ0AFEAA Fraxinus excelsior cDNA clone WZ0AFEAA8YF01CM1, mRNA sequence 

TCGCTTGGTGCAGGTCGGGAA
||||||..||||.| |||| |
AGCGAATTACGTTCTGCCCGT

EST sequence (targeted fragment marked with yellow):
GAATGATCTGCCTACAGTCTTTGAAGTCGTGACTGAAAGGAAGCCAGTAAGAGAGAAGACCAATGCAGAAAGCGGAAATAAATCCCGTGGCAGTACAAAGAGATATAGTGATGGTCAAGTTAAAAGCAACCCAAAACTGGCGGATGAGAGTTACGAAGAGGATGAAGATGAACACAGTGAAACGCTATGTGGTAGCTGTGGTGGAAATTACAGTGCAGATGAGTTCTGGATTGGCTGTGACATCTGTGAAAGGTGGTACCACGGGAAGTGCGTGAAGATAACTCCTGCAAAGGCTGAAAACATAAAGCAATACAAATGCCCGTCTTGCATTAAGCGAGGCAGACAGTAGTGGTTACTGAATCAATTTGGTTTAGAGGGCGTTTGGTCGCCCTTTTTTGCTCATTATTAGAAGAAATATAGCCGTTGCAAAATGAAAGTTGTAAAGTC