| mature miRNA: TCGCTTGGTGCAGGTCGGGAA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|3857552|gb|AI166267.1|AI166267 xylem.est.116 Poplar xylem Lambda ZAPII library Populus trichocarpa cDNA 5', mRNA sequence TCGCTTGGTGCAGGTCGGGAA EST sequence (targeted fragment marked with yellow): CTTGTTCTCAGTGGGCTTGAAGAAGGTTTGAGTACTCAGAAAGCAATTCGAGACAACAAACCTCTTCAAGTGGCTCTTGCTTCTCAATCTTTTGTTCAAATAGGATTTTTGATGGCATTGCCTATGTTGATGGAAATTGGCTTGGAAAGGGGTTTCCGCACTGCACTAAGTGAATTTTTATTGATGCAATTACAACTAGCACCTGTATTTTTCACATTTTCTCTTGGCACAAAGACCCACTACTATGGAAGGACATTGCTGCATGGTGGGGCAAAATATAGGTCCACTGGTAGAGGTTTTGTGGTCTTCCATGCCAAATTTGCTGACAACTATAGGCTTTATTCCCGCAGTCACTTTGTCAAGGGTATTGAGATGATGATTTTGCTTGTTGTTTATCAAATATTTGGTCAGCCATACAGAAGTGCAGTCGCCTATGTCCTAATAACTATATCTATGTGGTTTATGGTTGGTACCTGGCTTTTTGCTCCATTCCTCTTCAATCCTTCTGGTTTTGAGTGGCAGAAGATTGTTGATGATTGGTCTGATTGGAACAAGTGGATAAGTAACCGTGGAGGAATAGGTGTCCCACCAGAAAAGAGTTGGGAATCATGGTGGGAAGAAGAACAGGAGCATCTTCGTCACTCA | |||||||||
gi|3857542|gb|AI166257.1|AI166257 xylem.est.107 Poplar xylem Lambda ZAPII library Populus trichocarpa cDNA 5', mRNA sequence TCGCTTGGTGCAGGTCGGGAA EST sequence (targeted fragment marked with yellow): TCTGAGTGAAGATATATTTGCCGGCTTCAATTCTACACTACGTGAAGGGAATGTTACCCATCATGAATATATACAAGTTGGGAAGGGGAGAGATGTGGGCCTCAATCAGATTTCTATGTTTGAGGCCAAAATAGCTAATGGAAATGGAGAGCAGACTTTGAGTCGTGATATATACCGGCTTGGACACCGCTTTGACTTTTTCCGAATGCTGTCTTGCTACTTCACCACAGTTGGTTTTTACTTCAGCACTCTGATAACCGTGCTCACGGTGTATGTATTTCTTTATGGCCGCCTCTATCTTGTTCTCAGTGGACTTGAAGAAGGTTTGAGCACACAGAAAGCAATTCGAGACAACAAACCTCTTCAAGTGGCTCTTGCATCTCAATCTTTTGTTCAAATTGGATTTTTGATGGCGTTGCCTATGTTGATGGAAATTGGCTTGGAAAGGGGTTTCCGCACTGCACTAAGTGAATTTATACTGATGCAATTACAACTAGCACCTGTATTTTTCACATTTTCTCTTGGCACAAAGACCCACTACTATGGAAGGACATTGCTCCATGGAGGTGCCGAAAATATAGGC | |||||||||